mRNA_E-siliculosus-1a_F_contig100.63.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE) HSP 1 Score: 130 bits (326), Expect = 5.200e-35 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 Query: 1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 189 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN Sbjct: 61 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 123
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI) HSP 1 Score: 130 bits (326), Expect = 2.420e-34 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 Query: 1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 189 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN Sbjct: 161 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 223
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A0C9S8C9_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_11558_1868 transcribed RNA sequence n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9S8C9_9SPER) HSP 1 Score: 88.6 bits (218), Expect = 3.910e-19 Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 Query: 4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 ++KIFVRGL W+T+ ++L++VF QYGE+ E TV+MDK T KSKGYGFVTFK MDGA AL+ Sbjct: 97 HRKIFVRGLGWDTSSEALKSVFSQYGELEECTVIMDKGTGKSKGYGFVTFKHMDGAKRALK 157
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: H9VN61_PINTA (RRM domain-containing protein (Fragment) n=4 Tax=cellular organisms TaxID=131567 RepID=H9VN61_PINTA) HSP 1 Score: 82.0 bits (201), Expect = 1.700e-18 Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDG 168 ++KIFVRGL W+T ++L++VF QYGE+ E TV++DK T KSKGYGFVTFK MDG Sbjct: 83 HRKIFVRGLGWDTTSEALKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFKHMDG 137
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA) HSP 1 Score: 86.3 bits (212), Expect = 1.980e-18 Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 Query: 1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 V++K+FVRGL WET+ +LR FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+ Sbjct: 92 VHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALK 153
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A6P6S7K8_COFAR (UBP1-associated protein 2C-like n=2 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6S7K8_COFAR) HSP 1 Score: 85.9 bits (211), Expect = 3.620e-18 Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 +K+F+RGL WET LRA+F QYG++ EA V++DK+T KSKGYGF+TFK +DGA AAL+ Sbjct: 78 RKLFIRGLGWETTTDKLRALFSQYGDLEEAVVILDKVTGKSKGYGFITFKHIDGAMAALK 137
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: C0PTL4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=C0PTL4_PICSI) HSP 1 Score: 85.9 bits (211), Expect = 3.630e-18 Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 +K+FVRGL W+TN +SL+A+F Q+GE+ E V+MDK T KSKGYGFVTFK MDGA AL+ Sbjct: 64 RKLFVRGLGWDTNTESLKALFSQFGELEEGVVIMDKNTGKSKGYGFVTFKHMDGALNALK 123
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A068UBW6_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UBW6_COFCA) HSP 1 Score: 85.9 bits (211), Expect = 3.670e-18 Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 +K+F+RGL WET LRA+F QYG++ EA V++DK+T KSKGYGF+TFK +DGA AAL+ Sbjct: 78 RKLFIRGLGWETTTDKLRALFSQYGDLEEAVVILDKVTGKSKGYGFITFKHIDGAMAALK 137
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER) HSP 1 Score: 84.7 bits (208), Expect = 7.110e-18 Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 Query: 4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 ++K+FVRGL WET+ Q+L A FEQYGEI E V+MDK T KS+G+GFVTFK MD A AL+ Sbjct: 75 HRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALK 135
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: UPI000C1D474D (UBP1-associated protein 2C-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D474D) HSP 1 Score: 85.1 bits (209), Expect = 7.400e-18 Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 Query: 7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186 +K+F+RGL WET LRAVF YGE+AEA V++DK T KSKGYGF+TFK +DGA AL+ Sbjct: 73 RKLFIRGLGWETTTDGLRAVFSSYGELAEAVVILDKATGKSKGYGFITFKHVDGAVLALK 132 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig100.63.1 >prot_E-siliculosus-1a_F_contig100.63.1 ID=prot_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTback to top mRNA from alignment at E-siliculosus-1a_F_contig100:87448..88058+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig100.63.1 ID=mRNA_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=611bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:87448..88058+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:87448..88058+ >mRNA_E-siliculosus-1a_F_contig100.63.1 ID=mRNA_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:87448..88058+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |