mRNA_E-siliculosus-1a_F_contig100.53.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI) HSP 1 Score: 959 bits (2478), Expect = 0.000e+0 Identity = 535/558 (95.88%), Postives = 541/558 (96.95%), Query Frame = 3 Query: 168 MSSFHPLGSSADADPLTAAAPAELRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXXXYSRAVRNNGGAIGNNAAPTRGQREWERGPSPAAGASRTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGAPDAPVEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGAKHGTPAAIDAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDGRGYDSLSPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPPLDAEQYYEEGLEEEGGVWGEENAGMEETTDWSTSGAVV 1841
MSSFHPLGSSADADPLTAAAPA+LRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXX YSRAVRNNGGA G+NAAPTRGQREWERGPSPAAGASRTLS+VHSF LHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCR PESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGG DA VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGA+HGTPAAI+AIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSR XXXXXXXXXXXXXXXXXXXX HGGGDGRGYDS SPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAP DAEQYYEEGLEEEGGVWGEE+AGMEETTDWS SGAVV
Sbjct: 1 MSSFHPLGSSADADPLTAAAPADLRFHHXXXXXXSWTPPSLPGETRILPRSSASAGRTRSDRGGGTKGITDPLHNXXXXXXXXXXXXXXXXXXXXXXXXSYSRAVRNNGGATGSNAAPTRGQREWERGPSPAAGASRTLSVVHSFRLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRPPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGTSDALVEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGGDGRGYDSESPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 558
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A835YKQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ1_9STRA) HSP 1 Score: 181 bits (458), Expect = 3.570e-45 Identity = 98/231 (42.42%), Postives = 133/231 (57.58%), Query Frame = 3 Query: 552 PSPAAGASRTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGAPDAPV-----EDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRK-GWGAKHG 1226
P + A R LS VH F +H++ PTFC+ C +LL+G QG+ C C M +H CQ C+ DH C +++++ GV L P L G+ + P P+ EDP +SDWH+ L+++ ++ VPD A CMVCS FN+V RRHHCRRCG C+CG CS VSDKV+ + + G V + EPVR CT CTRV+D+ LA AL ++ G G KHG
Sbjct: 232 PRLSLSAYRPLSQVHQFQVHTFTKPTFCNSCGKLLMGFTNQGVCCTKCEMAVHAACQHALCTADHKCFHAAALKVTL------TDGVPLGEQVP-----ELSGASAALNPPLPLAHSRSEDPTHSDWHKHLLRSCEMRVPDRTALACMVCSAMFNIVRRRHHCRRCGACVCGACSAVKVSDKVMVQDFSGGPVRYVKETEPVRTCTRCTRVVDEALARALSKRVGGGRKHG 451
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A7S3XR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR58_HETAK) HSP 1 Score: 125 bits (315), Expect = 4.980e-27 Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 576 RTLSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQATPCSDDHCCRTPESVQISAGVDGSRNMGVRLKPGYPGGKNGVLGGSRSGGA-----------PDAP----------VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVL 1088
R L VH F S P C +CS+ ++ ++ G++C+VC M +H EC+ + DH CR P+++ + V R L + + G S++ P AP +EDPL S WHQ+L + WVPDSVA CMVC F L RRHHCRRCG C+C CS + V+D L
Sbjct: 241 RVLRDVHQFQPTSVKLPVMCAICSKPIVSLLHTGVRCSVCRMEVHAECRVALVTPDHKCRQPQALSVRESVPEVRMTAHELAVAHRRSR----GNSQTXXXXXXXXXXXXXXPSAPAPGRNDDEVELEDPLASVWHQRLRARGEAWVPDSVAPACMVCGAAFGLFTRRHHCRRCGACVCAGCSASRVTDPAL 428
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A7S2XYB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB4_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.720e-25 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 3 Query: 891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRL-------------SSGEPVRCCTPCTRVLDQQLAHAL 1196
VEDPL+S+WH+QLV+ Q WVPDSVA CMVC F ++ RRHHCRRCG C+CG+CS +++KVL + +I L +S VR C CT ++D+++A +L
Sbjct: 8 VEDPLDSNWHKQLVKRRQEWVPDSVAPCCMVCGSVFGMLRRRHHCRRCGACVCGYCSSATITEKVLRTDPRNDEIISLMTVAGPTPDGGAAASEALVRVCAKCTVLIDRRIATSL 122
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A1D2MG42_ORCCI (Pleckstrin y domain-containing family F member 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MG42_ORCCI) HSP 1 Score: 75.1 bits (183), Expect = 3.520e-11 Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 3 Query: 891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGAKHGTPAAIDAIRKRFPGPSSSSTP 1289
V D L + Q+ +WVPDS AA C VC PF V RRHHCR+CG+ +CG CS ++ L NQ S +P+R C PC + + Q W + D+ + PS SS P
Sbjct: 130 VNDLLKKSGKKPTEQHAAVWVPDSEAAACQVCRNPFTFVNRRHHCRKCGSVICGPCS----KNRALLPNQ---------SKKPLRVCNPCHNSVSGKNQDGNQNS-WAGNADSSGEDDSDDEGEENPSWSSAP 248
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0C2G1L1_9BILA (Phorbol esters/diacylglycerol binding domain protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2G1L1_9BILA) HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9 Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 3 Query: 582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ---ATPCSDDHCCRTPESVQISAGVDGSRNMGVRLK 821
++M H F +HSY PTFCD C +L G++ QGLQC+VC +N+H CQ A C + E Q+ G+ G + M VR K
Sbjct: 8 INMPHRFSVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQRNVANNCGINAKQMAAELAQL--GLTGDK-MSVRSK 87
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0M3KFD5_ANISI (Protein kinase C-like 1B (inferred by orthology to a C. elegans protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KFD5_ANISI) HSP 1 Score: 65.9 bits (159), Expect = 8.870e-9 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 Query: 582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
++M H F +HSY PTFCD C +L G++ QGLQC+VC +N+H CQ
Sbjct: 66 INMPHRFSVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 112
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0R3RMD4_9BILA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RMD4_9BILA) HSP 1 Score: 63.5 bits (153), Expect = 8.880e-9 Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 3 Query: 588 MVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
M H F +HSY PTFCD C +L G++ QGLQC+VC +N+H CQ
Sbjct: 1 MPHRFTVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 45
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A0N4TCF3_BRUPA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TCF3_BRUPA) HSP 1 Score: 65.1 bits (157), Expect = 9.050e-9 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 Query: 582 LSMVHSFGLHSYYAPTFCDVCSQLLIGIMQQGLQCAVCGMNIHPECQ 722
++M H F +HSY PTFCD C +L G++ QGLQC+VC +N+H CQ
Sbjct: 33 INMPHRFTVHSYKRPTFCDHCGSMLYGLINQGLQCSVCKLNVHKRCQ 79
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Match: A0A8B7PAX6_HYAAZ (pleckstrin homology domain-containing family F member 2-like isoform X2 n=3 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PAX6_HYAAZ) HSP 1 Score: 68.2 bits (165), Expect = 1.160e-8 Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 3 Query: 891 VEDPLNSDWHQQLVQNNQLWVPDSVAAGCMVCSR-PFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPC 1160
V+D LN + + +WVPD A C C R FN++ RRHHCR+CG +CG CS S K+L +Q S +P+RCC C
Sbjct: 130 VQDLLNKSGKKAADTHAAVWVPDDAATTCQHCQRVQFNVIQRRHHCRKCGRVVCGACS----SKKILLPHQ---------SSKPLRCCLAC 207 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig100.53.1 >prot_E-siliculosus-1a_F_contig100.53.1 ID=prot_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=559bp MSSFHPLGSSADADPLTAAAPAELRFHHNDDDDDSWTPPSLPGETRILPRback to top mRNA from alignment at E-siliculosus-1a_F_contig100:14482..19915- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig100.53.1 ID=mRNA_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:14482..19915- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:14482..19915- >mRNA_E-siliculosus-1a_F_contig100.53.1 ID=mRNA_E-siliculosus-1a_F_contig100.53.1|Name=mRNA_E-siliculosus-1a_F_contig100.53.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:14482..19915- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |