mRNA_E-siliculosus-1a_F_contig10.50.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: D7G0U6_ECTSI (DUSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U6_ECTSI) HSP 1 Score: 468 bits (1203), Expect = 1.130e-158 Identity = 229/233 (98.28%), Postives = 232/233 (99.57%), Query Frame = 1 Query: 241 NGDGGDELGAGRASYGDDLDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPEEARPPDKPQLCCCITERVIDCVFMSLFTCCSKWRRRCPWXXXXXXNAICPGRTSAAGGRYSRVTTGEDGEED 939
NGDG DELGAGRASYGDDLDTLDRRRTEEL+LIGEFDSANINPRRECWFIVDTKWLQ+WAKFVRGEGPPPGRISN+GLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPEEARPPDKPQLCCCITERVIDCVFMSLFTCCSKWRRRCPWXXXXXXNAICPGRTSAAGGRYSRVTTGEDGEED
Sbjct: 55 NGDGEDELGAGRASYGDDLDTLDRRRTEELRLIGEFDSANINPRRECWFIVDTKWLQTWAKFVRGEGPPPGRISNKGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPEEARPPDKPQLCCCITERVIDCVFMSLFTCCSKWRRRCPWXXXXXXNAICPGRTSAAGGRYSRVTTGEDGEED 287
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A6U1BH02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BH02_9STRA) HSP 1 Score: 166 bits (421), Expect = 4.680e-43 Identity = 82/196 (41.84%), Postives = 124/196 (63.27%), Query Frame = 1 Query: 256 DELGAGRASYGDDLDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPE--EARPPDKPQLCCCITERVIDCVFMSLFTCCSKWRRRCP 837
D+LGA ++L+ L+ RR+ EL L+ +FD INPRRECWF++DT W++ W+ ++ G+ PGRISN L + D +T LV + DYRG++P +W++++E+YGKD+A +LCRY +D+Y V KYR + + +A+VEV MR PE E D+P +CCC+ +R + C FTCC+ +R P
Sbjct: 28 DDLGA---LTPEELELLEERRSAELALVSKFDKTEINPRRECWFLIDTTWIRDWSLYMEGKRDSPGRISNLNLFEADERTVKRKLVPKQDYRGLSPLMWYIFVELYGKDAAPELCRYSLDIYAPGVAGKYREQASKGAALQARVEVSNMREEFIPESDEESVDDEP-VCCCVYQRQLQCFLFHTFTCCAHLGKRGP 219
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A7R9U3S0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3S0_9STRA) HSP 1 Score: 128 bits (321), Expect = 7.390e-30 Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 1 Query: 292 DLDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVEPEEARPPDKPQ------LCCCITERVIDCVFMSLFTC 810
D+D+ + RR +E++L+ E DS ++ +CW ++ T WLQ W+ +V GEGP PG + N L++ D +P GLV DYR VN V+ LY E+YG D +CRY +DLY V K++ P+ A++ Q++R R E PP +P CCC+T I+ + ++FTC
Sbjct: 34 DIDS-EERRMDEMELVREADSTQLDAYEDCWVLLPTSWLQEWSAYVAGEGPRPGVVRNHELLELD-NSPKPGLVKVRDYRAVNCRVYALYAELYGTDCTPAVCRYEVDLYAPSVMGKFKEAALRGPLLEARIAAQEVRKRYE----YPPSEPDSDTDVICCCCVTRTCIENMLYAIFTC 206
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A7S3M225_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M225_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.540e-23 Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 1 Query: 313 RRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRG-EGPP-PGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKMRWRVE------PEEARPPDKPQ-LCCCITERVIDCVFMSLFTCCSKWRR 828
R+ +ELKL+ +FD + IN +ECWF+VD+ WL W+ FV G +G PG +S + L+ D P+ L+ DYRGV P V+F++LE+YGKDS+ +LCRY ID+Y++ P+ + + + RAQ ++Q R R + EE D+P CC +T+ ++ TC S RR
Sbjct: 41 RKKQELKLVKKFDKSAINVAKECWFLVDSDWLNKWSAFVNGGDGEDSPGPLSTKELL-DAQDIPLLNLMPIRDYRGVPPIVYFIFLELYGKDSSPELCRYQIDIYKS--PVSVAKLVNIQLTGRAQAKIQVNRVRPKWLKWDRGEEDEGEDQPLGWCCGLTKEHLEAFIYWAITCWSNRRR 218
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A6H5L668_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L668_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 4.710e-20 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 472 LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR 603
LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR
Sbjct: 30 LVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCR 73
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A6G0XFM4_9STRA (DUSP domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFM4_9STRA) HSP 1 Score: 100 bits (248), Expect = 6.160e-18 Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 307 DRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKD------------DLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYEAEVPLKYRREICEEPMRRAQVEVQKM 702
+RRR EEL + + ++ +I+ R +CWF++D +W+ W K+ +GPPPG ISN G+V++ D P + L VDY V P VW + +E++G + RY D+Y +P R +I + P+ +A V V+ M
Sbjct: 6 ERRRKEELFFVQQHEATSIS-RGQCWFMLDAQWMDRWWKYATNDGPPPGPISNEGIVQEGWELRLHGDAPGDADLPRENLQLSVDYHCVTPLVWCVLVELHGSSRMPPMARYTKDIYSTPLPAVAREKILKTPLMQADVLVKTM 148
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: C5K6W1_PERM5 (DUSP domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6W1_PERM5) HSP 1 Score: 83.2 bits (204), Expect = 1.860e-13 Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 289 DDLDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYE 624
D +TL R E + + +FD+ + P + ++IV TKW+ SW +F+ E PG ISN L DDLKT + V DYRG+N +W +L YG + R+ +D+Y+
Sbjct: 91 DTEETLRLRARYEAEFVRKFDTVRLPPG-DIYYIVSTKWIDSWKRFISEEKELPGPISNNLLFHDDLKTLLPRFVRSKDYRGINQRIWSFWLARYGGGPL--ITRFTLDIYD 199
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A662YFZ9_9STRA (DUSP domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFZ9_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.890e-13 Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 1 Query: 295 LDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVK--------DDLKTPVD----GLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDL 618
L+ D RR ELKLI FD + +ECWF+V+T W+ W FV GP PG ISN L++ DD D GL DYR V P VW L + ++G A L RY +D+
Sbjct: 442 LEDADLRRRLELKLIMSFDRKELK-FKECWFVVNTAWMNRWVLFVGKGGPEPGPISNDELLQPGWETHLSDDTPGRADVVRSGLQLTKDYRCVAPLVWSLLVALHGSGKAPTLARYALDI 560
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A662Y400_9STRA (DUSP domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y400_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.230e-13 Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 1 Query: 295 LDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVK--------DDLKTPVD----GLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDL 618
L+ D RR ELKLI FD + +ECWF+V+T W+ W FV GP PG ISN L++ DD D GL DYR V P VW L + ++G A L RY +D+
Sbjct: 396 LEDADLRRRLELKLIMSFDRKELK-FKECWFVVNTAWMNRWVLFVGKGGPEPGPISNDELLQPGWEAHLSDDTPGCADVVRSGLQLAKDYRCVAPLVWSLLVALHGSGEAPTLARYALDI 514
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Match: A0A7J6S9E6_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S9E6_PEROL) HSP 1 Score: 79.0 bits (193), Expect = 1.070e-11 Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 289 DDLDTLDRRRTEELKLIGEFDSANINPRRECWFIVDTKWLQSWAKFVRGEGPPPGRISNRGLVKDDLKTPVDGLVSRVDYRGVNPAVWFLYLEMYGKDSAQDLCRYVIDLYE 624
D ++L R E + + ++D+ + P+ + ++IV TKW+ SW F+ PG ISN L +DDLKT + LV DYRG+N +W +L YG + R +D+Y+
Sbjct: 82 DTQESLRLRARYEAEFVRKYDTVRL-PQGDTYYIVSTKWINSWKHFISEGKGLPGPISNNVLFRDDLKTLLPRLVRSRDYRGINQTIWSFWLARYGGGPL--VTRLTLDIYD 190 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.50.1 >prot_E-siliculosus-1a_F_contig10.50.1 ID=prot_E-siliculosus-1a_F_contig10.50.1|Name=mRNA_E-siliculosus-1a_F_contig10.50.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=332bp MMMMEETAEVGAANGGRAARAVAGGGRSAAAAARNNNSRNLQEQAAADGGback to top mRNA from alignment at E-siliculosus-1a_F_contig10:140987..148474- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.50.1 ID=mRNA_E-siliculosus-1a_F_contig10.50.1|Name=mRNA_E-siliculosus-1a_F_contig10.50.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:140987..148474- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:140987..148474- >mRNA_E-siliculosus-1a_F_contig10.50.1 ID=mRNA_E-siliculosus-1a_F_contig10.50.1|Name=mRNA_E-siliculosus-1a_F_contig10.50.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1992bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:140987..148474- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |