mRNA_E-siliculosus-1a_F_contig10.44.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: D7G0V1_ECTSI (Transcription initiation factor TFIID n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V1_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 2.530e-146 Identity = 213/214 (99.53%), Postives = 214/214 (100.00%), Query Frame = 3 Query: 27 MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA 668
MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFV+VVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA
Sbjct: 1 MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVAVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQPDA 214
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: F0YMS8_AURAN (Uncharacterized protein GTF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMS8_AURAN) HSP 1 Score: 173 bits (438), Expect = 7.620e-48 Identity = 96/218 (44.04%), Postives = 133/218 (61.01%), Query Frame = 3 Query: 6 DSALLGRMEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
++ L+ R P A AA + P + P + V QNV ATVN+RI+ID +LA R+AEYNPKK AV+MR+REP+ T L+FS+GK+VITGA +AAR A++F +++ +G P F VQNMVAT + PI LE + Y A++ YEPELFPGLIY+ V +F SGR+VLTGGK HL A ++ P+L ++++
Sbjct: 11 ETELIARATAPTSTAEYNAANDFGDDDAPWSHPSGATIDV--QNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAKSEDAARRGARKFAAIIRKIGFQPKFG----EFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKK 222
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: A9CTI1_ENTBH (Transcription initiation factor TFIID n=1 Tax=Enterocytozoon bieneusi (strain H348) TaxID=481877 RepID=A9CTI1_ENTBH) HSP 1 Score: 165 bits (417), Expect = 3.000e-45 Identity = 82/178 (46.07%), Postives = 122/178 (68.54%), Query Frame = 3 Query: 126 VLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
+LQNV ATVN+ +D S+A R+AEYNPKK AV+MRIREP+ T L+F+SGK+V+TGA +A+R A+QR+ +++ +G + + F VQN+V++ ++ PI LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTG K+ + + EA + P+L QYR+
Sbjct: 59 ILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASRIASQRYSKIIQKLGFSVYFDS----FTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: A0A7S3JUH6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUH6_9STRA) HSP 1 Score: 172 bits (437), Expect = 6.080e-45 Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 3 Query: 120 RVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
R+V+QNV AT N+RI ID +LA R+AEYNPKK AV+MR+REP+ TGL+FS+GK+V TGA +R A++F +V++ +G NP F +QNMVAT +V+ PI LE + Y +++C YEPELFPG IY+ V +F SGR+V+TG K HL A ++ P+L Q+++
Sbjct: 61 RIVIQNVVATANLRIAIDLKTLATSARNAEYNPKKFAAVIMRLREPRCTGLIFSTGKMVCTGAKSEHESRMGARKFAAVLDKIGWNPKFT----EFTIQNMVATADVNFPIRLEQLVYSHSKFCSYEPELFPGCIYRLVVPKTVILLFVSGRMVITGAKSVSHLQTAFDKIFPVLLQFKK 236
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: A0A1Y1S6B8_9MICR (TBP n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S6B8_9MICR) HSP 1 Score: 163 bits (412), Expect = 9.440e-45 Identity = 81/184 (44.02%), Postives = 125/184 (67.93%), Query Frame = 3 Query: 108 QPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
+P + VLQNV ATVN+ +D S+A R+AEYNPK+ AV+MRIREP+ T L+F+SGK+V+TGA +A++ A+QR+ +++ +G + + F +QN+V++ ++ I LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTG KQ + + EA + P+L+QYR+
Sbjct: 34 RPEIVPVLQNVVATVNLNCKLDLKSIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEKASQVASQRYAKIIQKLGFSVFFDS----FKIQNIVSSCDLKFAIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREDIFEAFENIYPVLSQYRK 213
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: L2GNX2_VITCO (TATA-box-binding protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GNX2_VITCO) HSP 1 Score: 162 bits (409), Expect = 1.580e-44 Identity = 83/197 (42.13%), Postives = 125/197 (63.45%), Query Frame = 3 Query: 69 PAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
P P Q Q+ + VLQNV ATVN+ +D S+A + R+AEYNPK+ AV+MRIR+P+ T L+F+SGK+V+TGA +A++ A+QR+ ++ +G N F +QN+V++ ++ I LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTG K + + EA + P+L QYR+
Sbjct: 4 PGYTPEPKQTHLQRTGITPVLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGFNAQFTD----FKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRK 196
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: Q8ST28_ENCCU (TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1) n=6 Tax=Microsporidia TaxID=6029 RepID=Q8ST28_ENCCU) HSP 1 Score: 160 bits (406), Expect = 4.520e-44 Identity = 80/177 (45.20%), Postives = 120/177 (67.80%), Query Frame = 3 Query: 129 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
LQNV ATVN+ +D ++A + R+AEYNPK+ AV+MRIREP+ T L+F+SGK+VITGA +++R AAQR+ ++ +G N T + F +QN+V++ ++ I LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTG K D + +A + P+L Q+R+
Sbjct: 25 LQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDD----FKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 197
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: C4VBV7_NOSCE (Uncharacterized protein n=3 Tax=Nosema TaxID=27977 RepID=C4VBV7_NOSCE) HSP 1 Score: 160 bits (406), Expect = 4.660e-44 Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 3 Query: 126 VLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
+LQNV ATVN+ +D ++A + R+AEYNPK+ AV+MRIREP+ T L+F+SGKVVITGA + ++ AAQR+ ++ +G N N F +QN+V++ + I LE +AY + +C YEPELFPGLIY+ +V +F SG++VLTG K D + +A + P+L QY++
Sbjct: 25 ILQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKVVITGAKSEKQSKLAAQRYSKIINKLGFNADFND----FKIQNIVSSCDTKFSIRLEGLAYSHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFENIYPVLTQYKK 198
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: UPI0010FB6E15 (TATA-box-binding protein-like n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB6E15) HSP 1 Score: 159 bits (402), Expect = 1.990e-43 Identity = 80/185 (43.24%), Postives = 121/185 (65.41%), Query Frame = 3 Query: 105 QQPVVRVVLQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 659
Q+ + VLQNV ATVN+ +D ++A + R+AEYNPK+ AV+MRIR+P+ T L+F+SGK+VITGA E++R AAQ++ ++ +G N F +QN+V++ + I LE +A+ + +C YEPELFPGLIY+ +V +F SG++VLTG K D + +A + P+L QYR+
Sbjct: 21 QRSGITPVLQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTSLIFASGKMVITGAKSEESSRIAAQKYARIIHKLGFNTRFAD----FKIQNIVSSCDTKFSIRLEGLAFAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTQYRK 201
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Match: A0A109FK61_9BASI (TBP-domain-containing protein n=3 Tax=Rhodotorula TaxID=5533 RepID=A0A109FK61_9BASI) HSP 1 Score: 160 bits (404), Expect = 4.660e-43 Identity = 80/178 (44.94%), Postives = 118/178 (66.29%), Query Frame = 3 Query: 129 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAAGVEAAREAAQRFVSVVEGVGLNPTTNPNQLRFAVQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQP 662
LQN+ ATVN+ +D ++A R+AEYNPK+ AV+MRIREP+ T L+F+SGKVV+TGA + +R AA+++ +++ +G F +QN+V + +V PI LE +AY + YEPELFPGLIY+ VV +F SG++VLTG KQ D + +A ++ P+LN+YR+P
Sbjct: 82 LQNLVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKVVVTGAKSEDDSRLAARKYARIIQKLGFETKFTD----FKIQNIVGSCDVKFPIRLEGLAYGHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKQRDEIYQAFAQIYPVLNEYRKP 255 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.44.1 >prot_E-siliculosus-1a_F_contig10.44.1 ID=prot_E-siliculosus-1a_F_contig10.44.1|Name=mRNA_E-siliculosus-1a_F_contig10.44.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=215bp MEHPQGYAHAPAAQPAAAGNPPQNEPQQPVVRVVLQNVTATVNMRITIDPback to top mRNA from alignment at E-siliculosus-1a_F_contig10:100561..104807- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.44.1 ID=mRNA_E-siliculosus-1a_F_contig10.44.1|Name=mRNA_E-siliculosus-1a_F_contig10.44.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4247bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:100561..104807- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:100561..104807- >mRNA_E-siliculosus-1a_F_contig10.44.1 ID=mRNA_E-siliculosus-1a_F_contig10.44.1|Name=mRNA_E-siliculosus-1a_F_contig10.44.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:100561..104807- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |