mRNA_E-siliculosus-1a_F_contig10.40.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: D7G0V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V4_ECTSI) HSP 1 Score: 717 bits (1850), Expect = 1.310e-234 Identity = 411/456 (90.13%), Postives = 424/456 (92.98%), Query Frame = 1 Query: 1 GEVDEARLRREIPPPILERLQRELLNSSLPSGPGFTAPNSDAASATPYSAGSSFSSSSYLSRSGRNDVGARISRRLGATGPVPSSSGPGVSSPVSSFSPMAGRRGGSGGVGDGNRDLRRXXXXXXXXXXXXXXXGEERWIAAAPDESWRREQEATRGELGDSDDDDGCGSDFAGGLGMGSLSSPPHRASPSLRRSRNWAGVRIYPAEGHADTAREDQQQRQQDGAARCHPRLRRGAADPNDETTTAISARAASISSPGRGGTGERGXXXXXXAKRR--SSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYV 1362
GEV EARLRREIPPPILERLQRELLNSSLPSGPGFTA NSDAASATPYSAGSSFSS SYL+RSGRNDVGARISRRLGATGPVPSSSGPGVSSP SSFSP AGRRGGSGGVGDGNRDLRRXXXXXXXXXXXXXXXGEERW+AAAP ESWRRE E RGELGDSDDDDGCGSDFAGGLGMGSLSSPPHRASPS+ RSRNWAG YPAEGHADTARE+Q+QRQQD AAR HPRL+RGA DPND+TTT ARA SISSPG+GG GERGXXXXXX SSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHG+NLHAAGKS+RLVDRVADLLSDGNLK VNLLALEGVVRLGASMG+KLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLR+ITPEVGDVKPILLT +
Sbjct: 1782 GEVGEARLRREIPPPILERLQRELLNSSLPSGPGFTATNSDAASATPYSAGSSFSSPSYLNRSGRNDVGARISRRLGATGPVPSSSGPGVSSPASSFSPTAGRRGGSGGVGDGNRDLRRXXXXXXXXXXXXXXXGEERWVAAAPGESWRREHEGARGELGDSDDDDGCGSDFAGGLGMGSLSSPPHRASPSVPRSRNWAGR--YPAEGHADTAREEQRQRQQDAAARYHPRLQRGAGDPNDKTTTTTPARATSISSPGKGGIGERGXXXXXXXXXXXXSSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGNNLHAAGKSARLVDRVADLLSDGNLK---VNLLALEGVVRLGASMGSKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLREITPEVGDVKPILLTNSI 2232
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A6H5L523_9PHAE (CLASP_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L523_9PHAE) HSP 1 Score: 324 bits (831), Expect = 2.530e-93 Identity = 188/200 (94.00%), Postives = 191/200 (95.50%), Query Frame = 1 Query: 1 GEVDEARLRREIPPPILERLQRELLNSSLPSGPGFTAPNSDAASATPYSAGSSFSSSSYLSRSGRNDVGARISRRLGATGPVPSSSGPGVSSPVSSFSPMAGRRGGSGGVGDGNRDLRRXXXXXXXXXXXXXXXGEERWIAAAPDESWRREQEATRGELGDSDDDDGCGSDFAGGLGMGSLSSPPHRASPSLRRSRNWAG 600
GEVDEARLRREIPPPILERLQRELLN SLPSGPGFTAPNSDAASATPYSAGSSFSSSSYLSRSGRNDVGARISRRLGATGPVPSSSGPGVSSP SSFSP AG RGGSGGVGDGNRD+RR XXXXXXXXXXXXXXGEERWIAAAP ESWRREQE RGELGDSDDDDGCGSDFAGGLGMGSLS+PPHRASPS+ RSRNWAG
Sbjct: 1757 GEVDEARLRREIPPPILERLQRELLNFSLPSGPGFTAPNSDAASATPYSAGSSFSSSSYLSRSGRNDVGARISRRLGATGPVPSSSGPGVSSPGSSFSPTAGHRGGSGGVGDGNRDIRRRXXXXXXXXXXXXXXGEERWIAAAPGESWRREQEGARGELGDSDDDDGCGSDFAGGLGMGSLSTPPHRASPSVPRSRNWAG 1956
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A662YFC5_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFC5_9STRA) HSP 1 Score: 115 bits (288), Expect = 5.850e-23 Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 1 Query: 859 EAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVK-PILLTKYVRPTALSLVRENHPNVRDAGLSLLRAVEVALDPSSISYSPSRV 1488
+ E L + +LDSG+W++R L E T + L +GK L D +A + DGN K VN+LALE + ++ ++GN +E V+++ VPAV K+LA++N + ALA+ + LC VD L Q VA A++ N+R+K +L L +T + D K L +YV P AL L++E V++A L+R + AL ++ + S++
Sbjct: 1424 DTEELARLELKLDSGNWKDRFDALNEVTEFICGCARGLVDSGKLLGLFDVLAKRMDDGNAK---VNVLALECLEKVVPALGNGMEQVLSSFVPAVTKSLAANNPRLSALAQSVVQVLCSHVDARLLCQYVAVQARHSNSRVKPLLLDTLTKLTAQCSDDKGEYALNRYVLPLALELLKEPKSGVKEANAVLIRQLHAALGTPAVLTASSKL 1631
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A662WR45_9STRA (Mitogen-activated protein kinase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR45_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.720e-22 Identity = 72/211 (34.12%), Postives = 117/211 (55.45%), Query Frame = 1 Query: 859 EAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKP-ILLTKYVRPTALSLVRENHPNVRDAGLSLLRAVEVALDPSSISYSPSRV 1488
+ E L + +LDSG+W++R L E T+ + L +GK L D + + DGN K VN+LALE + + ++GN +E V+++ VPA+ K+LA++N + ALA+ + LC VD L Q A A++ N+R+K +L L +T + D K L +YV P AL L++E V++A L+R + L P +I + S++
Sbjct: 1784 DTEELTRLELKLDSGNWKDRFDALNEVTAFICGCARGLVDSGKLVVLFDVLVKRMDDGNAK---VNVLALECLEKAVPALGNGMEQVLSSFVPAITKSLAANNPRLSALAQSVVQVLCSHVDARLLCQYFAVQARHSNSRVKPLLLDTLTKLTAQSRDDKSDYALNRYVLPLALELLKEAKSGVKEANALLIRQLHAVLGPPAILTASSKL 1991
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A7S4PLE0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PLE0_GUITH) HSP 1 Score: 109 bits (272), Expect = 3.950e-21 Identity = 65/203 (32.02%), Postives = 113/203 (55.67%), Query Frame = 1 Query: 871 LPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYVRPTALSLVRENHPNVRDAGLSLLRAVEVALDPSSISYSP 1479
+P + + ++S D+R R + E T L+ + + ++S VD L D N+K V L AL+GV R+ + G L+ LVPAVC NL++++ Q LA L+++C +VDP + QP+ S ++GN R + +L +R++ P++G KP+LL K +A+ L+ E+ +VR A +L+ + A+ S + +P
Sbjct: 783 VPLIASSINSNDFRSRYDAVNELTELILKEPQVFQS--RTSYFVDMFIGRLGDNNVK---VALAALQGVDRVVETYGGMLDSSAAVLVPAVCANLSNTSPQIRTLASSVLESICNSVDPTVLAQPLCSSLEFGNQRARPALLERMRELVPQLGTKKPVLLQKLFLTSAIKLLEEHKSDVRAANSALVVELYNAMGDSMFNGNP 980
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A7S1XRK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRK2_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.210e-20 Identity = 65/200 (32.50%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 859 EAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLAL-EGVV-RLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYVRPTALSLVRENHPNVRDAGLSLLRAVEVAL 1452
E E LP +Y L S W ER + ++++ + D+ AAGK ++ D + + D N T L L +GV+ L N LE +P + S+ + A A+E L + DP +QPVASL ++GNAR++ ++A L ++TP+V KP+L+ KYV P A +L R+ R G L+R+++ +L
Sbjct: 63 EFEELPGLYRELLSSSWSERKDAFDRLGAIVKANPDDFAAAGKLAKAFDALVERAGDPNPTLQTHALHDLRDGVLPALAGRRKNHLEEFAPAAIPVIAGACVSARRGAQAAAQETLALYLSSTDPLRTLQPVASLVEHGNARMRETLVAHLAELTPQVYLRKPVLVGKYVPPAAAALFRDRSAAARQQGQQLVRSLKGSL 262
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A7S1SVF7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SVF7_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 4.130e-15 Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1 Query: 889 RLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKS--SRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDI 1314
+LDS DWRER GL L LH +S + L+D + + LSDGN K VN+LALE V + S+GN + +NTL+PA+ N AS+N++ + A +A+DAL +VD L VQ ++ + +G+AR K M+ L +
Sbjct: 14 QLDSKDWRERSAGLRALGDLK----TVLHTLPESQVALLLDSITNRLSDGNSK---VNVLALETVESILPSLGNAVGVGLNTLIPALSANAASTNEKIRSKAVDAMDALVASVDGALLVQNLSHVISHGSARSKAVMIERLEAV 150
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A7R9U3H6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H6_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.380e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 1 Query: 820 KRRSSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMG-NKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYVRPTALSLVRENHPNVRDAGLSLLRAVEVALDPS 1461
+RR++ AK E E LPEVY +L S W ER + ++ +H AAGK + D + + ++D N K L L+ V S + L + VP + S+ + A E L VD +QP+ASL ++GN R++ M+ L ++ +V + +P+L++KYV P +++R+ G ++++++ A S
Sbjct: 19 RRRTTMAKQIP--EFEELPEVYRQLLSSTWTERKASFDRLADIVCQHTAEFAAAGKLPKAFDALVECVADPNPKLMAHALTELKDRVFPSLSRHQHHLSDFAPSAVPTLAGACVSARRGAQRSAHETLRDFIARVDSTRVLQPIASLVEHGNQRMRETMMPHLAPVSADVYEKRPMLVSKYVPPAVAAVLRDRSGASHHQGQQIVKSLKEAFGES 231
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: UPI001425B6CE (TOG array regulator of axonemal microtubules protein 1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B6CE) HSP 1 Score: 87.0 bits (214), Expect = 4.600e-14 Identity = 68/223 (30.49%), Postives = 103/223 (46.19%), Query Frame = 1 Query: 820 KRRSSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYVRPTALSL---------VRENHPNVRDAGLSLLRAVEVALDPS 1461
K+ AKV + AE + ++ L S +W RLKG+ + E+ D + AG ++ D L D N K VNL AL+ + + + L VV +VP++ NLAS N + LD L E VDP + VQP + QYGN R+K PM+ L D++ V K + +++ P L V N+RDA +L + + + S
Sbjct: 820 KKGKRSAKVDE-QSAESIKTLHKDLSSSEWTVRLKGINTLQDMCVENPDLI--AGNIVKVFDAFILRLQDSNSK---VNLQALQTMEDIVPRLAEYLPAVVQRIVPSLASNLASKNSSIAQTSSGILDLLMEHVDPAVLVQPFCNATQYGNTRVKPPMIRKLSDLSAMVWPKKQQSIIRFMLPVLDHLLSNMSGSGAVHGGTGNIRDATNALAKKLHSLMGDS 1036
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Match: A0A815J6Z4_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815J6Z4_9BILA) HSP 1 Score: 85.1 bits (209), Expect = 1.850e-13 Identity = 61/190 (32.11%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 829 SSKAKVFHCREAELLPEVYARLDSGDWRERLKGLEEATSLLEEHGDNLHAAGKSSRLVDRVADLLSDGNLKASTVNLLALEGVVRLGASMGNKLEPVVNTLVPAVCKNLASSNQQRVALAEEALDALCEAVDPCLFVQPVASLAQYGNARLKVPMLAFLRDITPEVGDVKPILLTKYVRPT---ALSLVR 1389
SS K+ +AE + E+ ++ S D+RERL G+EE L E D A ++ D D L+D N K V L AL + ++ +G+ L VVN+ +P + N+AS N++ LA + +D E +D + +QP+ +L+Q N R++ ++ L ++ P V KP + ++ PT LSL+R
Sbjct: 817 SSTRKIHTADQAEQVRELTKQMRSSDFRERLNGIEEFQKLCELETDT--AIQSLVQIFDGFNDCLADMNSK---VVLKALNTMHQVIPILGDALSSVVNSALPLIAHNIASKNREISQLASDIIDTAIEYIDCGVLIQPLCTLSQNSNLRIRPEIVLKLANLAPRVCQRKPKQVEIHLLPTYWKLLSLLR 1001 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.40.1 >prot_E-siliculosus-1a_F_contig10.40.1 ID=prot_E-siliculosus-1a_F_contig10.40.1|Name=mRNA_E-siliculosus-1a_F_contig10.40.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=590bp GEVDEARLRREIPPPILERLQRELLNSSLPSGPGFTAPNSDAASATPYSAback to top mRNA from alignment at E-siliculosus-1a_F_contig10:64689..69120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.40.1 ID=mRNA_E-siliculosus-1a_F_contig10.40.1|Name=mRNA_E-siliculosus-1a_F_contig10.40.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:64689..69120- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:64689..69120- >mRNA_E-siliculosus-1a_F_contig10.40.1 ID=mRNA_E-siliculosus-1a_F_contig10.40.1|Name=mRNA_E-siliculosus-1a_F_contig10.40.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3540bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:64689..69120- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |