mRNA_E-siliculosus-1a_F_contig10.37.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 914 bits (2362), Expect = 0.000e+0 Identity = 457/518 (88.22%), Postives = 475/518 (91.70%), Query Frame = 1 Query: 226 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST-VGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLFLADEDYGDSAHGEGGGSFSMNPLSLSL----PLLVFLLTSLGCFFFRYCRNRETLATECQKHGSSQTECDI 1764
MT PGGRA+VVALLACLASVV AA VYP DPHLDWSEWDDPPASHL +DPAKS MDS+GR+HVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGK+AMEDIASKYSFH IGDSTSRRLGESFVSIFTGRGS HP+VQRD +FSSGNLKVHFYWAPLCSGPESVGAML TVMDAV A KDGKRAVIITA+GVHDAFELQHAANG GSPSY+S LP D+VEKDGMRAAALGACRD TTQLVR AAATAVPGT APPVEEEQSPGD + QLPNVST VG HETS+KQAAGIPPNNVRGGSVGAG EDAL ASAPPAASGPLQPLLFLMQNNRYPPGS+ENAFQEDLHRIQRQAVGEWEASEGSKG+ GERGLFLVDDSVGLYGNLSCYR ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTL LA+EDYGDSA GEGGG FS+NPLSLS PLLVFLL L CF FRYCRNRETLA ECQKHG + +EC I
Sbjct: 1 MTRIPGGRAIVVALLACLASVVCAASVYPSDPHLDWSEWDDPPASHLNNDPAKSIMDSNGRQHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLLLANEDYGDSADGEGGGRFSINPLSLSXXXXXPLLVFLLIPLACFLFRYCRNRETLARECQKHGRNPSECYI 518
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 850 bits (2197), Expect = 5.110e-302 Identity = 441/517 (85.30%), Postives = 451/517 (87.23%), Query Frame = 1 Query: 226 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST---VGPHETSEKQAAGIPPNNVRGGSVGAGNEDAL-GASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLFLADEDYGDSAHGEGGGSFSMNPLSLSLPLLVFLLTSLGCFFFRYCRNRETLATECQKHGSSQTECDI 1764
MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWD PPASHLKDDPAKSTMD GR+HVD+AGVRRL H G PC +ERLGKDAME IASKYSFHLIGDSTSRRLGESFVSIFTGRGSIH I QRDRDFSSGNLKVHFYWAPLCSGPESVGAMLA+VMDAVRA KDGKRAVIITAYGVHDAFEL HAANG GSPSYKSALP DVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST VGPHETSEKQAAGIPP+NVRGGSVGAGNED L GASAPPAASGPLQPLLFLMQNNRYPPGS+ENAFQEDLH IQRQ VGEWEASEGSKG+GGERGLFLVD+SVGLYGNLSCYR+ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPT+FLADEDYG SA GEGG SFSMN LSLSLPL VFLL SLGCF FRYCRNR TLA ECQKHG S ECDI
Sbjct: 1 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDAPPASHLKDDPAKSTMDGGGRQHVDDAGVRRL--------------------------------HPAG-PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTVFLADEDYGHSADGEGGDSFSMNSLSLSLPLSVFLLISLGCFLFRYCRNRGTLAPECQKHGRSPNECDI 484
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 1.580e-124 Identity = 223/441 (50.57%), Postives = 270/441 (61.22%), Query Frame = 1 Query: 268 LACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMD------------SSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDG-KRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLP 1551
L C S V A P LDWSEW DPP + + D+ A S+M+ + G + A VR LV CA RL+++ D+CG E P +D YRL HM SG LPCGFEER + +ED+ASK++FH IGDST RRLGESFVSIFTG+GS H +V D DFS+GNL+ FYWAP C G ESVGA LATVMD V+ K G KR VIITA+GVHD++EL G S SY ALP D V+ +R A LGAC+ TT QLV+AAAA + A P E+ PN +T ET+ G + GA AA+ P PL+FLMQNNRYPP S E+ + E+L RIQR V EWEA EG++ E G++LVDDSV L+ NLSCYR+ NPIHF EPVKL+EGKMLWDLL LV+ S P
Sbjct: 18 LVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEELLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVM--AWADPTAEKGQWSKAVHASPNTTTRSTTETN-------------------GVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNED--AEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERESASP 435
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.020e-49 Identity = 150/413 (36.32%), Postives = 193/413 (46.73%), Query Frame = 1 Query: 427 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRA---------GKDG-----------KRAVIITAYGVHDAFELQHAANGRG-SPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHET---SEKQAAGIPPNNVRGGSVGAGNEDALGAS-------------------APPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERG-----LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1521
GV RLV+ CA +L L C + P QD YR+ M SG CGFE + + + D+A KY F IGDST+RRL ESFVSI +GR S HP+V D S G+LKV F WAP CS G + A V DA+ DG +R VI TA+GVHDA EL+ A + Y LP + V G AAAL CRD T +LV AAA + G+ G + ++ + GI +RGG G +E A+ S L+FL+QNN + P S + F + LHRIQ Q + E A +G + +FL+ D LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 228 GVHRLVSDCARQLMLPGFSCDE---PVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVD---GGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGG-GVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLV 633
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.260e-48 Identity = 135/409 (33.01%), Postives = 186/409 (45.48%), Query Frame = 1 Query: 313 RDPHLDWSEWDDPPASHLKDDPAKSTMD---SSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLV 1530
D + W WD+ S + S +D S G+ LV CA RL+L C K +R+ M SG LPCGFE RL ED+AS+Y+ H +GDSTSRRL ESF+SI TG S H R+ + L+V+F+WAP C ++ L +MD +A G+RA+I+TA+GV D+ ++G G AALG C D LV+ A Q P G N+ A++PP L+FL+QNN + PGS ++ F DLH+IQR+ V +G + ++LV D ++ LSCYR + IHF++PVKL+EGKMLWDL+ LV
Sbjct: 23 NDQRVSWDGWDEQSQSPDPTTNSPSVVDLDVDSSHGSEYRGGLHDLVRQCAERLDLPGYTCEKNS---SSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNES--LHEIMDN-QALDGGRRAIIVTAFGVWDS------SHGGGDE------------------AALGVCADAVRSLVQVA----------------QPPPAGSTTAENI-----------------------------------AASPP--------LVFLLQNNPFLPGSEQDLFLRDLHQIQREIVD----------SGEQEAVYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELV 332
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.200e-47 Identity = 152/436 (34.86%), Postives = 192/436 (44.04%), Query Frame = 1 Query: 427 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAV-----RAGKDG----------------KRAVIITAYGVHDAFELQHAANGRG-SPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQL--PNVSTVGPHETSEKQAA-------GIPPNNVRGG-------------SVGAGNEDALGASAPPAASGPLQPL-----------LFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERG----------------LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1521
GV RLV+ CA +L L C + P D YR+ M SG CGFE R+ + + D+ASKY F IGDST+RRL ESFVSI +GR S HP+V D S G+LKV F WAP CS G + A V DA+ G D +R VI TA+GVHDA EL+ A + Y LP V DG AAAL CRD T +LV AA P++S + A GI +RGG V D G++ +FL+QNN + PGS + F + LHRIQ Q + E A + + G E+ +FL+ D LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 200 GVHRLVSDCARQLVLPGFGCDE---PVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVG---GGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.900e-34 Identity = 105/280 (37.50%), Postives = 146/280 (52.14%), Query Frame = 1 Query: 589 MEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPES-VGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKG---NGGERGLFLVDD 1416
+ED++S+Y FH +GDST+RRL ESFVSI TG+ S H +V D SSG+LKV F+WAP+C S + A + ++ A D RA+IITA+GVH+A L G P Y + HD ++ AAAL C + T+QLV A TA A +E+ G R L +V+ G + + GG V +D L PL+FL+QNN Y PGS E+ F E LH +Q + V +G+K +G G+F++DD
Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDA-RAIIITAFGVHNAHRLYGDQAGT-LPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTAGRSASA---NQEKLYSPGHRGL-DVADEGDPKFGRPRGTW-----TGGGDVSLSIDDEG-----------LPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVV-----RQGAKDIARHGENAGVFVLDD 331 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.37.1 >prot_E-siliculosus-1a_F_contig10.37.1 ID=prot_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=514bp MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDback to top mRNA from alignment at E-siliculosus-1a_F_contig10:38331..45310+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.37.1 ID=mRNA_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6980bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:38331..45310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:38331..45310+ >mRNA_E-siliculosus-1a_F_contig10.37.1 ID=mRNA_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3084bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:38331..45310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |