mRNA_E-siliculosus-1a_F_contig10.36.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A6H5KHY4_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHY4_9PHAE) HSP 1 Score: 473 bits (1216), Expect = 1.160e-161 Identity = 235/255 (92.16%), Postives = 241/255 (94.51%), Query Frame = 2 Query: 44 MFRIFDPYAMALSLLVGGVGFCTTFYFNTEMSEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILEGHGSGGA-----VAEGEDGKFQAPSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEAREDTVEGEGVRT 793
MFRIFDPYA+ALSLLVGGVGFCTTFYFNTE+SEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKIL GHG G AEGEDGKFQ PSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYF+ETYQRSLRPVTLLADEQGVLTAGYQ ++RAK IPHCYIVRG SGDTGAGAGFGVVEWHGHPARLEAALGYLMD+DEAREDTVEGEGVRT
Sbjct: 1 MFRIFDPYAVALSLLVGGVGFCTTFYFNTEISEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILGGHGGGXXXXXXKAAEGEDGKFQVPSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFIETYQRSLRPVTLLADEQGVLTAGYQRENRAKAIPHCYIVRGVSGDTGAGAGFGVVEWHGHPARLEAALGYLMDNDEAREDTVEGEGVRT 255
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A7S2Y039_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y039_9STRA) HSP 1 Score: 108 bits (269), Expect = 8.170e-23 Identity = 78/247 (31.58%), Postives = 121/247 (48.99%), Query Frame = 2 Query: 17 LLATKKGATMFRIFDPYAMALSLLVGGVGFCTTF-YFNTEMSEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILEGHGSGGAVAEGEDGKFQAPSPVGVPGLVTVKGPPLAAPKAGSLAVVF-FFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDD 751
+ TKK R FD +A+ +L++ +GFC ++ Y E + E P+ +YVY RNARFF+ D + ++ G G A + P + GL ++G ++P GS +V F+ATWC ++ L A + D+G+ +++E LR F+ + RSL LA E G LT YQ KT+PH Y++ G SG VEWHGHP +++A L ++ +D
Sbjct: 22 MAGTKK--QKIRFFDAFALIQALVLAAIGFCLSWWYLGWEYLTYR--EFLLPIGCAVYVYMRNARFFQEDGDGTS------GKGSAKDQ-----ISKPLAAELEGLTFLQG---SSPSMGSGPIVLLFWATWCGHSKKSLVPLNRTHASFKDQGVQVVAISREEVGVLREFLPSVGRSL--AYALASEDGRLTQKYQRAFGVKTVPHAYVI-GRSGR---------VEWHGHPTQIDAVLDEVISND 238
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A7S0LWB5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWB5_9CRYP) HSP 1 Score: 63.2 bits (152), Expect = 8.720e-8 Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 2 Query: 329 LVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETY-QRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHP-ARLEAAL 730
L V+G PKAG++ VV F+ATWC C + +P + RY D+G+ G++ E +++R FVE Q+ PV D + V + Y Q IP ++V G V W GHP A L+ A+
Sbjct: 64 LTYVQGDAAERPKAGTVTVVEFWATWCPPCVRSIPHLSELYTRYKDQGLDVVGISNESVDKVRPFVEKMGQKFNYPVA--CDPRSVNASNYPVQG----IPAAFLV----------GRDGTVLWSGHPMAGLDQAV 183
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: UPI001E3F1CAD (TlpA family protein disulfide reductase n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3F1CAD) HSP 1 Score: 65.5 bits (158), Expect = 1.330e-7 Identity = 40/142 (28.17%), Postives = 65/142 (45.77%), Query Frame = 2 Query: 365 KAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVE---------TYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEARE 763
K G++ VV F+ATWC C Q +P + + +Y D+G+ ++ E E + ++ T++ TL D G T Y + IP ++V G TG ++EW GHP RL+ L +++ RE
Sbjct: 66 KEGNVYVVEFWATWCGPCIQSMPHLVELQEKYRDQGVQIVSISDEDLETVEGILDRDYPGKEGVTFKELTSAYTLTVDPDGSSTDDYMRAAQQNGIPAAFLV----GKTG------LIEWIGHPMRLDDPLEQVLEGTWDRE 197
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A517MLY1_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MLY1_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 1.600e-5 Identity = 40/142 (28.17%), Postives = 61/142 (42.96%), Query Frame = 2 Query: 365 KAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVE---------TYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMDDDEARE 763
++G + +V F+ATWC C +P +Y D+G+ V++E E + F+E TY+ +L D Y IP +IV G SG ++EW GHP R+E L ++ D RE
Sbjct: 63 ESGKVYIVEFWATWCGPCIAAMPHLSETQQKYADQGVQLISVSREPLETVETFLEKPVRNEEDKTYRELTSTYSLTCDPDRSTFEDYFQAAGQTGIPCAFIV-GKSG---------LIEWIGHPMRMEEPLEQVLADKWDRE 194
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A5M6D8G9_9BACT (Redoxin domain-containing protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D8G9_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 2.020e-5 Identity = 41/149 (27.52%), Postives = 65/149 (43.62%), Query Frame = 2 Query: 368 AGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFV--------ETYQRSLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMD---DDEAREDTVEGE 781
+G++ VV F+ATWC C +P + Y D G+ V+ E +E+ + E++ +L D G Y + IP ++V G TG +VEW GHP +L+ L ++D D EA + +E E
Sbjct: 58 SGTVYVVEFWATWCGPCISSMPHLAQLQNEYRDRGVRIVSVSDESLDEVEALLKKPYPQKEESFADVTSAYSLTTDPDGSTHRDYMQAAEQRGIPTSFVV----GKTG------LVEWIGHPMKLDEPLAAVVDGTWDREAFKQEMERE 196
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Match: A0A517SB39_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SB39_9PLAN) HSP 1 Score: 58.2 bits (139), Expect = 2.600e-5 Identity = 41/142 (28.87%), Postives = 61/142 (42.96%), Query Frame = 2 Query: 338 VKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFVETYQR------SLRPVTLLADEQGVLTAGYQGQHRAKTIPHCYIVRGGSGDTGAGAGFGVVEWHGHPARLEAALGYLMD 745
VKG + K G + VV F+ATWC C +P + +Y D+ GV+ E ++ F++ Q+ + L D G Y + IP +IV GVVEW GHPAR++ L ++D
Sbjct: 60 VKGEKVDGFKPGQVYVVEFWATWCGPCLATMPHLAELQTKYGDKA-QMIGVSTEETSKVADFLKDEQKEGVTWDATITYRLAMDVDGKTNEAYMSAAGERGIPTAFIV----------GREGVVEWIGHPARMDEPLAKVVD 190 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.36.1 >prot_E-siliculosus-1a_F_contig10.36.1 ID=prot_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp MFRIFDPYAMALSLLVGGVGFCTTFYFNTEMSEWGKDEIAYPMMAMIYVYback to top mRNA from alignment at E-siliculosus-1a_F_contig10:20297..24537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.36.1 ID=mRNA_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4241bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:20297..24537+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:20297..24537+ >mRNA_E-siliculosus-1a_F_contig10.36.1 ID=mRNA_E-siliculosus-1a_F_contig10.36.1|Name=mRNA_E-siliculosus-1a_F_contig10.36.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:20297..24537+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |