mRNA_E-siliculosus-1a_F_contig10.34.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: A0A6H5KFT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT8_9PHAE) HSP 1 Score: 433 bits (1113), Expect = 2.650e-151 Identity = 239/249 (95.98%), Postives = 241/249 (96.79%), Query Frame = 1 Query: 1 MATTATATVRSSRDKNAVERFVPPTAKAATDKNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAAXXXXXXXXXXXXXXXXREVKPRPLNGYMMFIREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEKKRGAVAEEEE 747
MATT T TVRSSRDKNAVERFVPPTAKAATDKNALYEGSGT LADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAA XXXXXXXXXXXXXREVKPRPLNGYMMF REARAKVLKADPGLK TEVTAKMGQMWAECSDAQKEKYKQQGIKEFE+K+GAVAEEEE
Sbjct: 1 MATTTTTTVRSSRDKNAVERFVPPTAKAATDKNALYEGSGTLLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAAKKRXXXXXXXXXXXXXREVKPRPLNGYMMFSREARAKVLKADPGLKSTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEEKKGAVAEEEE 249
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: D7G0W0_ECTSI (Similar to DEK oncogene (DNA binding) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W0_ECTSI) HSP 1 Score: 374 bits (961), Expect = 2.410e-127 Identity = 204/213 (95.77%), Postives = 207/213 (97.18%), Query Frame = 1 Query: 109 EGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAAXXXXXXXXXXXXXXXXREVKPRPLNGYMMFIREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEKKRGAVAEEEE 747
+GSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAA XXXXXXXXXXXX EVKPRPLNGYMMF REARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEKK+GA+AEEEE
Sbjct: 4 QGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAAKKRKXXXXXXXXXXXXXEVKPRPLNGYMMFTREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKEKYKQQGIKEFEKKKGAMAEEEE 216
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: A0A482SK40_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SK40_9ARCH) HSP 1 Score: 104 bits (259), Expect = 1.000e-22 Identity = 63/204 (30.88%), Postives = 105/204 (51.47%), Query Frame = 1 Query: 91 DKNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKK-WTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLA------SPDPSESKGPVAKKPKKAAXXXXXXXXXXXXXXXXREVKPRPLNGYMMFIREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQKE 681
D + GSGTKLA L K+ D +++K H +Y G+KT K N+R F+GF D + +K+ E+KK WTV+ L++ +L G+E+GG++ E+ +R+V +LA +P ++ + +K PKK + +VK P Y++F RA+V + +P + T+V +G+ W S +KE
Sbjct: 84 DHSITASGSGTKLAQYEYFLQELTKVKGDSEVVKCLHTLMYNTPGRKTSAKHNLREFNGFGSDVNVKEKTEKVVENKKKWTVSLLKEALSLFGMERGGNREELCERLVEYLAHPRIVVAPGKTKRRRSTSKSPKKQSKKSKGE-----------KVKRAP-TAYILFSNAHRAEVKEQNPDISFTDVGKTLGEKWNALSPEEKE 275
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: A0A812PF79_9DINO (Hmg-1.2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PF79_9DINO) HSP 1 Score: 105 bits (262), Expect = 1.070e-21 Identity = 72/210 (34.29%), Postives = 104/210 (49.52%), Query Frame = 1 Query: 109 EGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDAR--MKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPV--------------AKKPKKAAXXXXXXXXXXXXXXXXREVKPR-----PLNGYMMFIREARAKVLKADPGLKPTEVTAKMGQMWAECSDAQ 675
+G G KL D+ IV +L+++ AD ++LK H L+G G RKKNIR+F G+ D G DA ++++T SK WT+A L+D +GL+K G E+ R+V+FLA P + P K K+A+ XXXX KP L YM+F + R +V A+P K E+ +G MW E A+
Sbjct: 1295 QGEGVKLGDLDIVNYHLSRVTADVEILKQIHRLLFGTQGAVASRKKNIRAFCGY-DTAGFDAEKIVERITSSKVWTIALLKDALAFMGLDKSGASLELASRLVAFLAKPHSNVKAAPAKAVAAGGSSSPVKKTKGTKRASSRSEGADAGKTKXXXXXXXKPEGYPKAALGPYMLFTQSVRPEVKAANPDAKIPELGKILGAMWKEADQAE 1503
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: A0A484D7X5_PERFV (SAP domain-containing protein n=4 Tax=Percidae TaxID=8165 RepID=A0A484D7X5_PERFV) HSP 1 Score: 90.5 bits (223), Expect = 7.600e-17 Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 1 Query: 37 RDKNAVER--FVPPTAKAATDKNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFP---DDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKK 465
R K VER F P K +K +GSG KL DIP + +NKI A LK HA L+ GK + KKN+R F+GFP D + + +KL ++ T + L+ +C +L LEK G+ A++VDRI++FL P S + PV KK
Sbjct: 49 RAKKTVERLDFQAPKQK---EKLKTGDGSGDKLGDIPRIGFQINKIKAAD--LKPLHAILFDRQGKMALLKKNLRLFNGFPFDADSEQYTKKREKLLKNSNLTNSKLKVVCGVLDLEKKGNHADLVDRILNFLIEPKNSGKRLPVKKK 191
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: A0A0L8HRU0_OCTBM (SAP domain-containing protein n=2 Tax=Octopus TaxID=6643 RepID=A0A0L8HRU0_OCTBM) HSP 1 Score: 89.0 bits (219), Expect = 2.000e-16 Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 1 Query: 37 RDKNAVERFVPPTAKAATDKNALY-EGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARM--KKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPK 471
R+K VER A K L EG+G KL D PI+ LN++ A++ LK H L+ G K+NIR F+GF D GKD + KK K T A+LR +C +LGLE+GG K E++++I+ FL P + G KPK
Sbjct: 88 REKKKVERLEMSVTSANDKKKILIPEGTGEKLGDCPIIEYQLNRVKAEN--LKIIHRALFDRPGALVEIKRNIRKFNGF--DFGKDDKRFDKKRALLAKNTTASLRKICEILGLERGGAKDEILNKIMDFLVKP---KDTGKSVPKPK 228
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: UPI001C46D3A1 (protein DEK-like isoform X1 n=5 Tax=Homarus americanus TaxID=6706 RepID=UPI001C46D3A1) HSP 1 Score: 85.5 bits (210), Expect = 3.230e-15 Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 1 Query: 37 RDKNAVERFVPPTAKAATDKNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKK 465
RD+ VERFV T K + G+GT L DIP + + K+ D LK H Y G + KKN+R F+GFP + KL+ ++ ++ L+ + +LGLE+ G+K EVV+R+++F+ P + + P K
Sbjct: 109 RDRKKVERFVQETKKEDVEST----GTGTALGDIPFIEAMIMKMSTDE--LKVLHRVAYSRPGSGSEIKKNLRKFNGFPFNKEDKKYQSKLSTVERILMSELKKMLMILGLERSGNKGEVVERLMAFMLEPQDTGKRPPKTVK 245
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: UPI001403D60E (protein DEK-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403D60E) HSP 1 Score: 85.1 bits (209), Expect = 6.430e-15 Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 1 Query: 37 RDKNAVER--FVPPTAKAATDKNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALR-DLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPKKAA 480
R+K VER F P +KA T K + EG+G +L +I V +NK+ AD +LK H +Y G T KKNIR F+GF D +K KK+ L+ C +L LEKGG+K EVV RI+ FL P S P + +K++
Sbjct: 107 REKRKVERLSFQAPKSKAETHK--IEEGTGERLGEIERVNFFMNKMKAD--VLKPLHKVIYNRPGNLTEVKKNIRQFNGFSFSKDSDMYKRKEDSIKKYHKDVLKASFCDVLDLEKGGNKDEVVARIMDFLLQPKSSGKPLPKSSHKRKSS 253
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: UPI001899BA55 (protein DEK n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI001899BA55) HSP 1 Score: 83.6 bits (205), Expect = 1.460e-14 Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 25 VRSSRDKNAVER--FVPPTAKAATDKNALYEGSGTKLADIPIVPVNLNKID-ADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFP---DDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPK 471
+ R VER F P AK +K + +G G KL DIP + K+ AD LK H L+ GK KKN+R F+GFP D + KL +T + L+++CT+L LEK G +++VDRI+ FL +P S + PV KK K
Sbjct: 27 IEGKRTTKTVERLDFQAPKAK---EKLKIGDGGGDKLGDIPRTNYQITKMKPAD---LKPLHNILFDRPGKTASMKKNLRLFNGFPFSADSPQFSKKRDKLLRKSNFTNSKLKEVCTVLDLEKKGTHSDLVDRILMFLVAPKNSGKRVPVKKKRK 175
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Match: UPI001425B493 (protein DEK-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B493) HSP 1 Score: 83.2 bits (204), Expect = 2.630e-14 Identity = 53/126 (42.06%), Postives = 70/126 (55.56%), Query Frame = 1 Query: 94 KNALYEGSGTKLADIPIVPVNLNKIDADHDLLKAFHAFLYGGVGKKTVRKKNIRSFSGFPDDDGKDARMKKLTESKKWTVAALRDLCTLLGLEKGGDKAEVVDRIVSFLASPDPSESKGPVAKKPK 471
K + EG GTKL ++ V L++ +AD LK + FL+G VGK KK+IR FSGF + KK + T+ ALRD CT L LE+GG+K V+ RI+ F +P PS K P K K
Sbjct: 117 KFEIVEGQGTKLGEMERVEFVLSRTNADQ--LKLLYRFLFGKVGKLFEVKKHIRQFSGFNFKENDHEYDKKEQFLIRVTMTALRDFCTYLDLERGGNKDVVMKRIMDFCLNPVPSGRKVPKKKGQK 240 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.34.1 >prot_E-siliculosus-1a_F_contig10.34.1 ID=prot_E-siliculosus-1a_F_contig10.34.1|Name=mRNA_E-siliculosus-1a_F_contig10.34.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=288bp MATTATATVRSSRDKNAVERFVPPTAKAATDKNALYEGSGTKLADIPIVPback to top mRNA from alignment at E-siliculosus-1a_F_contig10:625..8105- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.34.1 ID=mRNA_E-siliculosus-1a_F_contig10.34.1|Name=mRNA_E-siliculosus-1a_F_contig10.34.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7481bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:625..8105- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:625..8105- >mRNA_E-siliculosus-1a_F_contig10.34.1 ID=mRNA_E-siliculosus-1a_F_contig10.34.1|Name=mRNA_E-siliculosus-1a_F_contig10.34.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:625..8105- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |