mRNA_E-siliculosus-1a_F_contig1.27.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.27.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.27.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 2.890e-136
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHA+LIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 198
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 288 bits (738), Expect = 6.180e-97
Identity = 143/197 (72.59%), Postives = 169/197 (85.79%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIPAP+DK+KRMVVP AL+V+R+APGR+ CVLGRLS EVGW H DL++RLEA+RK++SEA+Y  KKA  QL+ KA A A+L+AV PVLE YG
Sbjct:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 258 bits (659), Expect = 6.300e-85
Identity = 129/197 (65.48%), Postives = 155/197 (78.68%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            M+E+ V VD R HLLGRLAS+VAKELL GQKVVV RCE I +SG  +R K KY+ + +KR NTNP RGP+HFR+P+RIFWRTVRGMLP KT RG+EAL RL  FEGIP PYDK KRMVVP+AL+V+R+AP R+ CVLGRLS EVGW + D++ RLE +RK+ S AYY  KKA  +LK KAT  A+L+ V PVLE +G
Sbjct:    1 MYESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFG 197
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 256 bits (654), Expect = 3.630e-84
Identity = 127/198 (64.14%), Postives = 155/198 (78.28%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF  PV VDGRGHLLGRLAS VAKELL GQ+VVVVRCE I  SG  +RNK KY+ + +KR NTNP RGP HFRSP+++FWRTVRGMLP KT RG +ALARL  FEGIPAPYDK KRMVVPNAL+V+R+ P R++C LGR++ EVGW +AD++ RLEA+RK+ SEAYY  KKA  +L+ +A A A +  +   L+ YG+
Sbjct:    1 MFSGPVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A7S1TQI9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQI9_9STRA)

HSP 1 Score: 256 bits (654), Expect = 3.750e-84
Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:    1 MFEAPVT-VDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MF    T +D RGHLLGRLAS++AKELL GQKV VVRCE+I ++GSL+RNKVK+  Y++KRH TNPK+GP H+RSPAR+ WR VRGMLP KTARG+ ALARL+ FEGIPAPYDKKKR+VVP AL+V+R+ PGR+F VL  L+ EVGW H DLI+RLE +RK++++A+Y  KKAA   K  ATA  +L+AV PVLE  G+
Sbjct:    1 MFSPNATLIDARGHLLGRLASIIAKELLCGQKVTVVRCEEICVTGSLLRNKVKWANYRRKRHLTNPKKGPIHYRSPARMLWRVVRGMLPHKTARGQAALARLATFEGIPAPYDKKKRVVVPEALKVLRLQPGRKFTVLKTLANEVGWKHKDLIERLENKRKLEAQAFYEKKKAAAAQKRAATAAVDLSAVTPVLEANGY 199
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.230e-84
Identity = 129/196 (65.82%), Postives = 158/196 (80.61%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKA---AKQLKDKATAEANLAAVAPVLEEYGF 594
            V +DGRGHLLGRL+S+VAKELL GQKVVVVRCE++ ISG LVRN  +YMQ+ +KR NTNPKRGP+H+R+P+RI WRT+RGMLP KT RG +ALARL+ FEGIPAPYD KKR+VVP AL+++R+ PGRRFC L RL+ EVGW H DL+ RLEA+RKIK+EAYY  KKA   AK L ++  A   L+AV  VL  +G+
Sbjct:    8 VVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAAS-ELSAVNNVLAGFGY 202
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A7S0LS12_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS12_9EUKA)

HSP 1 Score: 256 bits (653), Expect = 4.500e-84
Identity = 126/183 (68.85%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:   16 VTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAA 564
            V +DG+GHLLGRL S++AK+LL G+KVVVVRCE + ISGSL RNKVKY Q+ KKR NTNP RGP+HFRSPARIFWRT+RGMLP KT RG+ ALARL+CFEGIP PYDKKKR+VVP+AL+ +R+   R F VLG LS+EVGW + DL+ +LEAQRKIK +AYY +KKA   LK KA A A+L+A
Sbjct:   12 VVIDGKGHLLGRLCSIIAKQLLFGKKVVVVRCEALIISGSLTRNKVKYAQFMKKRMNTNPNRGPFHFRSPARIFWRTLRGMLPHKTVRGQSALARLACFEGIPEPYDKKKRVVVPSALKSLRLRADRNFTVLGELSKEVGWGYTDLVAKLEAQRKIKEQAYYAEKKAQVALKSKAAASADLSA 194
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BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 255 bits (651), Expect = 1.070e-83
Identity = 128/197 (64.97%), Postives = 156/197 (79.19%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 591
            +F+  V VDGR H+LGRLAS++AKELL GQKVVVVRCEQ+ +SGSLVRNKVK+  + KKR NTNPKRGP H+RSPAR+ WRTVRGMLP KT RG++ALARL CFEG+P PYDK K+MVVP AL+V+R+ PGRRF VL RL+ E GW H  LI ++E +R  +S  +Y  KK+A  LK KATA A+L+ VA VLE +G
Sbjct:    2 VFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFG 198
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A7S2DZL3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.170e-83
Identity = 129/200 (64.50%), Postives = 157/200 (78.50%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKA--TAEANLAAVAPVLEEYGF 594
            M E  + VDGR HLLGRLASVVAKELL GQKVV+VRC+Q+ ISGSLVRNKVKY Q++KKR NTNP +GPYHF+SPA++ WRT+RGM  +KTARG+EALARLS FEGIP PYDKKKR V+P AL+V+R+ P R + VLG L+  VGW H DL+KRLE +RK+++ A+Y  KKA  QL++KA   A   LA V  VLE  G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Match: A0A6V1NQ00_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ00_HETAK)

HSP 1 Score: 253 bits (646), Expect = 5.980e-83
Identity = 132/198 (66.67%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHADLIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF 594
            MFE  V VDGRGHLLGRLAS+VAK+LL GQKVV+VR E+I +SGSL+R K ++ Q+ KKR NTNPKRGP HFRSPA+IFWRTVRGM+P KT RG  A+ARL CFEGIP P+DKKKRMVVP AL+V+R+   R+   LG L+ EVGW  A LI+RLEA+RKI+S+AYY+ KKAA  LK KA AEA+L+ VA VL   G 
Sbjct:    1 MFEDTVVVDGRGHLLGRLASIVAKQLLCGQKVVLVRAEEIVMSGSLIRKKTQFAQWLKKRTNTNPKRGPIHFRSPAKIFWRTVRGMIPHKTVRGTAAMARLQCFEGIPHPWDKKKRMVVPEALKVLRLKAHRKNTKLGTLAGEVGWEKAGLIERLEAKRKIRSQAYYLKKKAAVVLKTKAAAEADLSPVAAVLAPLGM 198
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W9_ECTSI2.890e-13699.4960S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9N1_9STRA6.180e-9772.5960S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
A0A5J4Z3W8_PORPP6.300e-8565.4860S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A7S1TDT8_9RHOD3.630e-8464.14Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1TQI9_9STRA3.750e-8464.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TSL6_9STRA4.230e-8465.8260s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]
A0A7S0LS12_9EUKA4.500e-8468.85Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
F0Y3B4_AURAN1.070e-8364.97Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2DZL3_9STRA3.170e-8364.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V1NQ00_HETAK5.980e-8366.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:190717..194927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size597
Model size597
Exons5
Ec32 orthologEc-01_011950.1
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC2.8.1.8
EggNOG OGsCOG0102@1,KOG3204@2759
EggNOG free text desc.Belongs to the universal ribosomal protein uL13 family
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
KEGG ModuleM00177
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG ReactionR07767,R07768
KEGG koko:K02872,ko:K03644
KEGG rclassRC01978
Preferred nameRPL13A
Seed eggNOG ortholog2880.D7G6W9
Seed ortholog evalue7.6e-106
Seed ortholog score389.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.27.1prot_E-siliculosus-1a_F_contig1.27.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 190717..194927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.582825-CDS-E-siliculosus-1a_F_contig1:190716..1908521622927500.582825-CDS-E-siliculosus-1a_F_contig1:190716..190852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 190717..190852 +
1696318553.0364397-CDS-E-siliculosus-1a_F_contig1:190716..1908521696318553.0364397-CDS-E-siliculosus-1a_F_contig1:190716..190852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 190717..190852 +
1622927500.5980728-CDS-E-siliculosus-1a_F_contig1:191538..1916481622927500.5980728-CDS-E-siliculosus-1a_F_contig1:191538..191648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 191539..191648 +
1696318553.0507443-CDS-E-siliculosus-1a_F_contig1:191538..1916481696318553.0507443-CDS-E-siliculosus-1a_F_contig1:191538..191648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 191539..191648 +
1622927500.6254516-CDS-E-siliculosus-1a_F_contig1:192552..1926121622927500.6254516-CDS-E-siliculosus-1a_F_contig1:192552..192612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 192553..192612 +
1696318553.06176-CDS-E-siliculosus-1a_F_contig1:192552..1926121696318553.06176-CDS-E-siliculosus-1a_F_contig1:192552..192612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 192553..192612 +
1622927500.6698978-CDS-E-siliculosus-1a_F_contig1:193281..1934431622927500.6698978-CDS-E-siliculosus-1a_F_contig1:193281..193443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 193282..193443 +
1696318553.069661-CDS-E-siliculosus-1a_F_contig1:193281..1934431696318553.069661-CDS-E-siliculosus-1a_F_contig1:193281..193443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 193282..193443 +
1622927500.6879916-CDS-E-siliculosus-1a_F_contig1:194798..1949271622927500.6879916-CDS-E-siliculosus-1a_F_contig1:194798..194927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 194799..194927 +
1696318553.077842-CDS-E-siliculosus-1a_F_contig1:194798..1949271696318553.077842-CDS-E-siliculosus-1a_F_contig1:194798..194927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 194799..194927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.27.1

>prot_E-siliculosus-1a_F_contig1.27.1 ID=prot_E-siliculosus-1a_F_contig1.27.1|Name=mRNA_E-siliculosus-1a_F_contig1.27.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=199bp
MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNK
VKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALAR
LSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAD
LIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYGF*
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mRNA from alignment at E-siliculosus-1a_F_contig1:190717..194927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.27.1 ID=mRNA_E-siliculosus-1a_F_contig1.27.1|Name=mRNA_E-siliculosus-1a_F_contig1.27.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4211bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:190717..194927+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCGTGAGTTACCACCG
CCATGATGCTCGTAGATGTTGATCGCTTGTTCCCTCACCCGATGCCCGGA
GGCAACTCACTAGGGCTCCTTGTCCACACCCTGGGCGAAGAGAGCATGGC
TCGCGAGTTGGGCTCACGGTGTTGGTTTTTGAGAGTGGAGCAACAGAGGA
TGCGTTGGCCTGTTTTGGGGATGGAGAGGAAATGGACTTGGGCATTGACT
CGTAGGTTCGTGGTGACCAGTCGATGCGGGCAACCGCGATGCCAAAGGGC
GTTCTGCGAACAGCGGTAGCCTTCTTGACAAGCGATGCAAGCCGGCTGCT
AGCAGCATCTCCGAGGTTTTAGGCTGGTGACCTACTTCGTGATTGCGGTG
GTTGTTGGGAAAGCTCACACAACTCACGTTGTGCCTTTTCCATGCATGCT
CGAAACAAGCAGCGACGGTCTTGCTGTGTGTTTATTGTTTATTCTCAGTG
TCCTAAGAGGTTGCTGGAGGGGAGGCCATTCTCTGATGTGCCTCCCGCTG
CAATCCGGTCCCCCACCTTCCGGTAGAGTAAAAGGCTAGTGACCCGCCCA
TAGGGAGTGCAATTGTTGATTTCGTAGGAAAGGCCGATTTAATAATACAC
CAATAGCATTGCTGTCCCTGCACGGCAACCTGGGCGCTCAACTCTCCCTA
TCCCTCCATGATCGCATGGCAGTGGTCCGTAACAAGGTGAAGTACATGCA
GTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGCCCGTACCACT
TCCGCTCGCCTGCCCGCATCTTCTGGCGGACGGTGAGCCTCGTCACTCTG
TGCAGGAGCAGCTGCAAGGGAATGCTTGTGTGGTTTTCGCGCACTGCTGT
GTAACTTTACCACCTTTCCCTGTGTTCGAGTGTAGGACAGATAGGCCCTA
ACCGATGCGTACGCAAGTACTATAATAAGGCAGCTGTGCTATATCGGTAC
TTCGTTTTGGGGTGCTCAAGAGCGCTCGTCCGTGTTGGTGTGTGTACGTT
ATCATGGGACTGGGTGTTGACGCCGTGATTCCCCTTCTCGCTTGTTGCTC
TTGCACTTGAGAGAGATCAGTCGTATCATACGTGCACAGGTAGTGCGTTA
TCATCCCTAGTCTTTCGGTAGTCTTCCCGACTCTTGACCATGTTGGGTAT
GGACGCCCTTTTGACCGACCCACGACGGAGTGTAGGCTCTTTCGAATCCT
CATGTGCCCGGTGAATTGGGTCATGTACGCACGTGGCAGTGCAAAGATCA
ATCTCTCAAATATCGGCCGCAATAGCGTGTACCGCCTGTCCGATCGTGCG
AGTGATCCTGAGAACGTACAGTAGTCTTACGAAGTTCCTTGTAGACTGGC
GTACAATAGTAGGAGAGGTGTCGTTCCCCCCACCCGATTTATCGACCACA
GGACAAGTTTTCAGTTAGCAAAGGCGAATGATACATCTCCAGAGCCGTTG
CCGAGGTCGATTCTACCCTTGTTTGCACCGCTTGTATACCCACCTCGCTG
TCGGAAAACCTCATCGGGGAAGAATCCCCTTGCACCGCCCCTATCCCGGG
GGACGAAAAGACCGATGACTGCTGTGGCTTATCATCTGCACGATCATGGT
TGAGGTGCGACGAACCTCGGTAACCATCGTTCTGACTGTTGCAAATGTTG
CTGGTGGCTGTGTGTTGCGTGCTTTTGCAACGACAGGTAAGGGGAATGCT
CCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTCGCACGCCTCTCGGTAA
GCAATCAAACAGCAGTAAGACAGCAGTACAAGGTATCAGATAGATAGGCG
GAGAGGGACGGTTGGCTGAAATCGCAAGTACATCGGCTGCTGGTTACCGT
AGGTGGTGGAGAGCTGAAAATAGATGCTCGTTGCTGTGTTGATTGGAATG
CTAGAATACCGTGGGTGATGTATTGGTGTGCTATGCTATGCATCGAACTA
TTGGGCGGCGGAGCGGTCATCGACGTTACGGTACAACCTGATCCCGCCGG
TTGAAAAGCAACGGCAGGAGTAGGAGATGTGTAGTCGTATTTTCTGCGAG
AGTATGATGTCTAGCGCTTGCTGAGCCGTTTTTGTGCACAGGGGGCAGTA
AGAATGGCGACAACTATCATATGACAAGGGCCATCGGTCTACTGAATATT
CGCGCGTGTGCCATCCTGGCGGAGTCTGATGATACTTAACGCAGGCAGCA
GTAGCAGCAAAAGGCAGCCCTCTATCGCGTTCTGCGGGAAGCCGCATATG
ATGGGTCGTGCAGGCCCCTACTATCATAGCCCTCGGTGGGTTGATATGGT
TTATCCATGCGACGCTCCCGATGCGCAATATTTCCTCCCCCTGCTCCAAA
GCTACCTGTCGATGGCGTGACATGTGCTACATTGCTGCTGTCATATCTGT
TGCTGTTTCCCCCAGTGCTTCGAGGGCATCCCGGCCCCCTACGACAAGAA
GAAGCGTATGGTCGTGCCTAACGCCCTTCAGGTTATCAGGATGGCACCCG
GCCGCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTCGGATGGCCG
CACGCAGACCTCATCAAGCGCCTCGAGGTAAACAACACTAAAATAAAAGT
ACAACATCACTGAGTCCACGATGAAAAACACACCAAGGAATGCTAGATGC
CAGCTTTTTGTTGATGTGGCGGGATGTGCAACGGCTTTCGATTGTGGCGC
TATTTCATGTATCATTTCCTGTTTAAAGAGAGATTCTGTGGCCAAATTTG
CTTCACGGCAGAAAGCGCTAAAAATTATCTTCATTGTAGAGAGCTGATAG
TCTGCTTGACGCTTGACACGGTGTGTTGTAGGAAGAAGGCTATCTCCCTA
CAACTGTCCCGGAGGCTAGTGATACGTGAACGAAAGTCGTGCATGTACCA
ATGACTGGGTACACCCGAGTTCATTCCAGCTGTGCGCGAGCTGTGCGGGG
TAACAACAATGCACCCTATCGAATGGAAAGTGTGGTGTTTTGTTGGCGCT
CCTGCGATTTATTGCTAGCCATTTCACATTTGACCTGGTGTACCTTGTCA
CCGCGTCATGATGTTGTTGACAGTTGACAGCATACTATTGGTCTTGTCTT
CCCGCTCGTGTCCTGTGGTGTGATATCCAAATCCAATTGATACCTTTCCA
AGATGATTTGACTCTTTACAACACAAAACAAAGGGCCGTTGGCTAGTTCG
TTTACGTACCCGGAGCAGTGCGAGCAGTGCGTACACATGTCACTGATGCG
GTGGTTGTACCCTGACTTGAAGCAATACGCCAAGTTGCTTTACCACTTTG
CTGCCGGTGTCAAGAGTGTTGCTTGGTGTTGACGCACGCACACCACGCGC
ACGGCGTTGCTGCAGCAGGCGAATATACCGACTCTCGAATGTATGTACTT
CACACGATGTCGTGGGTGGGCTGTGTTCCAAGTTATCTTGTCGTGTGATG
GTGACGCACTACTACGGAAACCATAGCTATTCGTTGGGGATTGTAGCAGC
ATCTGTTGTTTCCCTTTTGACGAACATTACGCCTGCCCGAGTCACGGCTC
GTACGGTAGAGATAGTGGGGTGACATTTCGCCTCTCCAAACGATGACACT
GCTGTGTCGAGCCGTCACCTGCGGCGTGCCACGCTGCCTACCGGACCCTG
AAGATCGATTTCAATGCTTGGCGATTGCGTGCATTTACTCCATTAATGCT
TGTGTTGACCCCGCTGCCTTTGACATTTAGCGCTATTCCACTATTGTACG
CTTGTCGAGTTGGGCTCGTTCCCCCCTTCGCGACACACTCTGATGGTGTG
TTTGGCATCATGTGTCTTCCTTGGAGGTCATTACAGGTGCCACCAACCAA
CCAGCAAATGCAGCTCTCTTGACTTGTGGTGTTTCTCTTCCCTCACTCCT
GCCCCCGCATTTTTGTTGGTGCGCTCGCTCAGGCCCAGCGCAAGATCAAG
TCGGAGGCGTACTACGTGGACAAGAAGGCGGCCAAGCAGCTCAAGGACAA
GGCCACGGCGGAGGCCAACTTGGCTGCCGTTGCGCCCGTACTCGAGGAGT
ACGGCTTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:190717..194927+

>mRNA_E-siliculosus-1a_F_contig1.27.1 ID=mRNA_E-siliculosus-1a_F_contig1.27.1|Name=mRNA_E-siliculosus-1a_F_contig1.27.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:190717..194927+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGAGGCACCCGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCG
CCTGGCGTCCGTCGTGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCG
TCGTGCGGTGCGAGCAGATCACCATCAGCGGCTCTCATGTTCGAGGCACC
CGTTACCGTGGATGGCCGCGGCCACCTGCTCGGGCGCCTGGCGTCCGTCG
TGGCGAAGGAGCTGCTTGGCGGCCAGAAGGTGGTCGTCGTGCGGTGCGAG
CAGATCACCATCAGCGGCTCTCTGGTCCGTAACAAGGTGAAGTACATGCA
GTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGCCCGTACCACT
TCCGCTCGCCTGCCCGCATCTTCTGGCGGACGTGGTCCGTAACAAGGTGA
AGTACATGCAGTACAAGAAGAAGAGGCACAACACCAACCCCAAGCGCGGC
CCGTACCACTTCCGCTCGCCTGCCCGCATCTTCTGGCGGACGGTAAGGGG
AATGCTCCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTCGCACGCCTCT
CGGTAAGGGGAATGCTCCCCCGCAAGACCGCCAGGGGCGAGGAGGCGCTC
GCACGCCTCTCGTGCTTCGAGGGCATCCCGGCCCCCTACGACAAGAAGAA
GCGTATGGTCGTGCCTAACGCCCTTCAGGTTATCAGGATGGCACCCGGCC
GCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTCGGATGGCCGCAC
GCAGACCTCATCAAGCGCCTCGAGTGCTTCGAGGGCATCCCGGCCCCCTA
CGACAAGAAGAAGCGTATGGTCGTGCCTAACGCCCTTCAGGTTATCAGGA
TGGCACCCGGCCGCCGCTTCTGCGTGCTCGGACGCCTCTCCGAGGAGGTC
GGATGGCCGCACGCAGACCTCATCAAGCGCCTCGAGGCCCAGCGCAAGAT
CAAGTCGGAGGCGTACTACGTGGACAAGAAGGCGGCCAAGCAGCTCAAGG
ACAAGGCCACGGCGGAGGCCAACTTGGCTGCCGTTGCGCCCGTACTCGAG
GAGTACGGCTTCTAAGCCCAGCGCAAGATCAAGTCGGAGGCGTACTACGT
GGACAAGAAGGCGGCCAAGCAGCTCAAGGACAAGGCCACGGCGGAGGCCA
ACTTGGCTGCCGTTGCGCCCGTACTCGAGGAGTACGGCTTCTAA
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