mRNA_E-siliculosus-1a_F_contig1.25.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: D7G6X1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X1_ECTSI) HSP 1 Score: 736 bits (1899), Expect = 4.250e-258 Identity = 441/494 (89.27%), Postives = 451/494 (91.30%), Query Frame = 2
Query: 53 CCATALDSSLGLSPADPT*EIRMAPNRRLGVALACACSAGAALGFVPNVGNAGVRSRRGGVEGGCTSIIGVGGANHYGSFAGAPVLQGRPSAGLRRVGRRGRHGRRSTVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFAPEEEFPMSDEDEFEDVTIDEYGRMVYEGQPEKPPPIKDEDRAPFWEGLGDKISDRLNEFEKEEGPLKEASKFAQQLSGAVNEKVMGIDRAAAPTDTSXXXXXXXXXXXXXXXXXXXXXXXXXAGVGMANGWKPPTSELGMEKKVELANDVPSELDAPS---ATSELSIDEQFERLDTIAALEEERASTMQRLEAKIEAKIGNIKNELLELVDEDFQEKRTKIDQQFSARAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--AETTPSTAAPSPNATPPERSTAAAGIKMEEK 1519
CCATALDSS GLSPAD T EIRMAPNRRLGVALACACSAG ALGFVPNVGNA VRSRRGGVEGGCTSIIG+GGA+ YGSFAGAPVLQGRP+AG RRVGRRGRHGRRSTVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFAPEEEFPMSDEDEFEDVTIDEYGRMVYEGQPEKPPPIKDEDRAPFWEGLGDKISD+LNEF+KEEGPLKEASKFAQQLSGAVNEKVMGIDRAAAPTD+S XXXXX AGVGMANGWKPPTSELGME+ VELANDVPSELDAPS ATSEL+IDEQFERLDTIAALEEERASTMQRLEAKIEAKIGNIKNELLELVDEDFQEKRTKIDQQF+ARAE XXXXXXXXXXXXXXXXXXXXX XXXXXX AETTP+TAAPSPNATPPERSTAAAGIKMEEK
Sbjct: 16 CCATALDSSRGLSPADLTREIRMAPNRRLGVALACACSAGVALGFVPNVGNAAVRSRRGGVEGGCTSIIGIGGASQYGSFAGAPVLQGRPAAGQRRVGRRGRHGRRSTVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFAPEEEFPMSDEDEFEDVTIDEYGRMVYEGQPEKPPPIKDEDRAPFWEGLGDKISDKLNEFDKEEGPLKEASKFAQQLSGAVNEKVMGIDRAAAPTDSSTSDVGAGAAWEGPAEAVAGXXXXXAAGVGMANGWKPPTSELGMEETVELANDVPSELDAPSGSSATSELTIDEQFERLDTIAALEEERASTMQRLEAKIEAKIGNIKNELLELVDEDFQEKRTKIDQQFAARAETKAAXXXXXXXXXXXXXXXXXXXXXVESAGXXXXXXXXXAETTPATAAPSPNATPPERSTAAAGIKMEEK 509
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: A0A835Z5Z6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z6_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.080e-36 Identity = 116/309 (37.54%), Postives = 150/309 (48.54%), Query Frame = 2
Query: 389 GFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFAPEEEFPMSDEDEFEDVTIDEYGRMVYEGQP------EKPPPIKDEDRAPFW---EGLGDKISDRLNEFEKEEGPLKEASKFAQQLSGAVNEKVMGIDRAAAPTDTSXXXXXXXXXXXXXXXXXXXXXXXXXAGVGMANGWKPPTSELGMEKKVELANDVPSELDAPSATSELSIDEQFERLDTIAALEEERASTMQRLEAKIEAKIGNIKNELLELVDEDFQEKRTKI 1288
G +FFG+G PE VVL VGYFVLGP EL KL K G LVGQ RD GLGT NL I++ +++ E A+G + E+ P D+DE+ED+ P P KD F+ +G GD+ D E E +KFA Q+SG N++V+ + A AP G G+A LANDVP L A EL+IDEQFERL+ +AALEEERA+ MQRL+ EAK+ ++ ELLELVD DF+ +R K+
Sbjct: 6 GPGESFFGIGAPEAAVVLAVGYFVLGPTELYKLTKSIGTLVGQFRDFGLGTATNLQNIMEKELRTVEDKAAGRSTLDREWGNLEDAPAGDDDEYEDIXXXXXXXXXXXXXXXXXXXVSAPKPAKD-----FFGGADGGGDEYEDLDVEEFLAETSASNNNKFAAQMSGDWNKQVLEQEAAVAP------------------------------GGGVAG----------------LANDVPQSLQAGGEPRELTIDEQFERLEKLAALEEERAALMQRLDDAFEAKMRAVRGELLELVDSDFRARRAKL 263
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: A0A7R9ZB23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZB23_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.630e-6 Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 2
Query: 386 VGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQ 580
+G D+ GVG PEV V+++VGYF+LGP +L KLVK+ G + +R +G+ + ++DQ++
Sbjct: 36 LGQDSGILGVGAPEVAVIVLVGYFILGPTDLYKLVKEIGKFIQNIRTLGVEASKSFENTMEDQLE 100
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: A0A7S2S1E5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1E5_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.710e-6 Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 2
Query: 377 VQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAEQIASGEKKPPDYFA 631
V +G FGVG PE+VVVL+VGYFVLGP EL LVK+ G V +R +G ++DQ+ + +++ +K+ D F+
Sbjct: 96 VMNLGGAEGIFGVGAPELVVVLIVGYFVLGPTELYSLVKEIGKFVQNIRSLGTDAAKTFEDSMEDQL-DMKELREAQKELNDAFS 179
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: A0A7S1CRH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CRH9_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.190e-5 Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 2
Query: 362 GRRSTVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQNAE 589
G +++ ++G D GVG PE+ +LVVGYFVLGP EL KLVK+ G V R + + +++Q++ E
Sbjct: 17 GSSTSLNVLGGDGGILGVGAPEIATILVVGYFVLGPSELYKLVKEIGKFVQNFRSLSTEASKQFESTMENQLELTE 92
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Match: K0R3M1_THAOC (Sulfotransfer_1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3M1_THAOC) HSP 1 Score: 58.2 bits (139), Expect = 7.060e-5 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 2
Query: 335 RRVGRRGRHGRRSTVQMVGFDNTFFGVGGPEVVVVLVVGYFVLGPVELVKLVKQAGVLVGQLRDVGLGTVNNLTTIVDDQIQ 580
RR G R +++ +G D GVG PEV V L+VGYFVLGP +L KLVK+ G V R +G + +++Q++
Sbjct: 61 RRTGNRQARQSTTSLNFMGSDGGILGVGAPEVAVTLLVGYFVLGPSDLYKLVKEIGKFVQNFRTLGTEAAKSFEGTMENQLE 142 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1.25.1 >prot_E-siliculosus-1a_F_contig1.25.1 ID=prot_E-siliculosus-1a_F_contig1.25.1|Name=mRNA_E-siliculosus-1a_F_contig1.25.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=468bp MAPNRRLGVALACACSAGAALGFVPNVGNAGVRSRRGGVEGGCTSIIGVGback to top mRNA from alignment at E-siliculosus-1a_F_contig1:180415..185868+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1.25.1 ID=mRNA_E-siliculosus-1a_F_contig1.25.1|Name=mRNA_E-siliculosus-1a_F_contig1.25.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:180415..185868+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:180415..185868+ >mRNA_E-siliculosus-1a_F_contig1.25.1 ID=mRNA_E-siliculosus-1a_F_contig1.25.1|Name=mRNA_E-siliculosus-1a_F_contig1.25.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2808bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:180415..185868+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |