mRNA_E-siliculosus-1a_F_contig1.19.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI) HSP 1 Score: 441 bits (1133), Expect = 1.410e-152 Identity = 227/228 (99.56%), Postives = 228/228 (100.00%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVTE 949
MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGT+DAMVTE
Sbjct: 1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTDDAMVTE 228
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.590e-69 Identity = 119/218 (54.59%), Postives = 156/218 (71.56%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALA 919
MP+S+RN+ VSLT T+KKGR LKQ ++ ++R +D + ++VF + N+RS+L+K+VRLDFR DSRFFMGKN +M ALG S +DEY DNLRQVS+ ++GQ GLL T R E V +YF LAV + A GF ETI LP G WPV MM+Q RKLG+ VEV++ L RK +MC G+ ++PE AKLL L+D+KI+ F + L CRWSEG+FE A
Sbjct: 1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQCGLLVTNRSQEAVLSYFADLAVPEFANAGFFAQETITLPVGPT-QWPVGMMDQLRKLGLQVEVQDSQLWLRKECDMCKKGQALTPEQAKLLTLHDRKISVFKIKLTCRWSEGDFEEYA 217
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A6V1SP53_HETAK (Ribosome assembly factor mrt4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SP53_HETAK) HSP 1 Score: 200 bits (508), Expect = 2.090e-58 Identity = 109/213 (51.17%), Postives = 147/213 (69.01%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGE 904
MP+S+R++KVSLTKT KGR+ KQ +V +VR+ +DE+ ++Y F F N+RS KE R D+R DSRFF+GKNK+M +ALG++ +DEYQD LR +SK L G VGLL T RP +EV++YF + D A G + ET+ L GSL ++P MM + RKLG+ VEV + VL + +C AGEPI E AKLL K+ATF +SL+ RWSE +
Sbjct: 1 MPKSKRDKKVSLTKTDSKGRQQKQKMVQKVREAIDEFDALYTFRFDNMRSNNFKECRADWR-DSRFFLGKNKLMQIALGRTPEDEYQDGLRSISKELVGNVGLLMTSRPRDEVESYFSNFSKKDFAKAGAIAPETVTLERGSL-NFPAYMMSEIRKLGLTVEVRDAVLELMEDATICVAGEPIGVEAAKLLEHMQLKLATFQISLVSRWSEAD 211
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: I2CRG5_NANGC (Ribosome assembly factor mrt4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRG5_NANGC) HSP 1 Score: 200 bits (508), Expect = 4.420e-58 Identity = 113/227 (49.78%), Postives = 153/227 (67.40%), Query Frame = 2
Query: 242 TLHTAAAAMPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGS--LGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEAL 916
T + + +MPRS+R+QKVSLTKT+ KG+E K G +++VR+ +D + S+YVFSF ++RS K+VR+D+R DSRFFMGKNKVM ALG +DE++DNLR +SKRL GQVGLL T R EEV TYF+ V D A PG + D + L L +P SM + FRKLG+ +E + G LV +A +C G+ I+PE AKL+ D + F + L+C W +GEFE L
Sbjct: 14 TEPSLSTSMPRSRRDQKVSLTKTTSKGKEQKAGTIAKVREALDSFTSLYVFSFQHMRSSKFKDVRIDWR-DSRFFMGKNKVMQKALGLLPEDEFRDNLRFLSKRLSGQVGLLATNRSREEVLTYFENFKVQDFAKPGVIADADVTLEPSKDPLHFFPTSMFQLFRKLGLNLETKNGKLVLLEAFPVCRKGKAITPEQAKLMTHLDLPLVDFRIRLVCCWRDGEFEEL 239
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A3M6VK82_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VK82_9STRA) HSP 1 Score: 199 bits (507), Expect = 5.160e-58 Identity = 107/227 (47.14%), Postives = 153/227 (67.40%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVT 946
MP+S+R + LT+ +KKGRELK+ +V +R VD Y S Y FS+ N+R+ K VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+DH GFV ET+ +P G L + SMME R LG+ V+++ G +V + +C G+ ++PE AKLL +D K+A F + +L WS+ ++E LA T DA+ T
Sbjct: 1 MPKSKRQRTKPLTQANKKGRELKKNVVDSIRNAVDTYESAYAFSYQNMRTNHFKNVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLYRLSKDVSGNTGLLFTNKPHEEVMDYFVKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMMESLRGLGLPVDLKNGAIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSVWSKDKYERLA--TEDAVTT 224
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: H3GA64_PHYRM (Ribosome assembly factor mrt4 n=24 Tax=Phytophthora TaxID=4783 RepID=H3GA64_PHYRM) HSP 1 Score: 198 bits (503), Expect = 2.030e-57 Identity = 103/218 (47.25%), Postives = 150/218 (68.81%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALA 919
MP+S+R + LT+ +KKG ELKQ +V +R VD Y S YVFSF N+R+ K+VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+DH GFV ET+ +P G L + SM+E R LG+ V+++ GV+V + +C G+ ++PE AKLL +D K+A F + +L WS+ +++ +A
Sbjct: 1 MPKSKRQRTKPLTQANKKGNELKQNVVEAIRNAVDTYASAYVFSFQNMRTNHFKDVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGSTGLLFTNKPHEEVVAYFAKLSVSDHPRSGFVATETVTIPEGPLPQFIGSMLESLRGLGLPVDLKNGVIVLSRNYTICKPGQTLTPEQAKLLVHFDHKMAEFKLVMLSLWSKDKYQRIA 217
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A485KK68_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK68_9STRA) HSP 1 Score: 197 bits (501), Expect = 4.990e-57 Identity = 106/219 (48.40%), Postives = 152/219 (69.41%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWS-EGEFEALA 919
MP+S+R + LT+T KG +LK+G+V +R +DEY +VYVFSF N+R+ K VR DF DSRFF+GKNKVM +ALG++ ++EY +N+ +++ + G VGLL T +P EEV+ YFK LAV D A GFV ET+ +P G L + SM+E R+LG+ V+++ G +V +C AG+ ++PE AKLL +DKK+ATF + LL RWS +G++E LA
Sbjct: 1 MPKSKRVRTKPLTQTKSKGADLKKGVVETIRNAIDEYQTVYVFSFENMRTNHFKVVRADF-SDSRFFLGKNKVMKVALGRTPEEEYAENIFKLATDISGSVGLLMTNKPNEEVQQYFKDLAVEDFAKSGFVATETVTIPAGPLPQFIGSMVESLRQLGLPVDLKRGAIVLINDHTICKAGQTLTPEQAKLLVHFDKKMATFNVQLLSRWSTDGKYERLA 218
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A8K1CRH8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH8_PYTOL) HSP 1 Score: 196 bits (499), Expect = 7.490e-57 Identity = 107/225 (47.56%), Postives = 150/225 (66.67%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAM 940
MPRS+R + LTK+ KKG ELKQ +V +R+ VD Y S Y FSF N+R+ KEVRLDFR DSRFF+GKNKVM LALG+++++EY D+L +++ + G VGL FT R +EV YF L+ D A GFV E + +P G L + S +E R LG+ V++++GV+V R+ +C G+ ++PE A+LL +D+K+ATF ++ L WS+G FE LAE M
Sbjct: 1 MPRSRRQRVKPLTKSEKKGSELKQRVVDSIREAVDTYESAYAFSFQNMRTNHFKEVRLDFR-DSRFFLGKNKVMKLALGRTKEEEYADDLFKLAADVNGSVGLFFTNRDRQEVIDYFNKLSFTDFARSGFVATEAVSVPEGPLPQFIGSQLESLRTLGLPVDLKKGVVVLRQDYTICKEGQTLTPEQARLLQHFDRKMATFKLTPLSVWSKGSFERLAENPEAGM 224
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: A0A3F2RLT2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT2_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.510e-56 Identity = 106/227 (46.70%), Postives = 155/227 (68.28%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAMVT 946
MP+S+R + +LT+ KKG LKQ +V VR VD Y S YVFSF N+R+ K+VR+DF+ DSRFF+GKNKVM LALG+S+++EY +NL ++SK + G GLLFT +P EEV YF L+V+D+ GFV ET+ +P G L + SM+E R LG+ V++++GV+V + +C G+ ++PE AKLL +D+K+A F + +L WS+ +++ LA + DA T
Sbjct: 1 MPKSKRQRTKALTQADKKGNALKQNVVDAVRNAVDTYTSAYVFSFQNMRTNHFKDVRMDFK-DSRFFLGKNKVMKLALGRSKEEEYAENLFRLSKDVSGNTGLLFTNKPHEEVLDYFSKLSVSDYPRSGFVVTETVTVPEGPLPQFIGSMIESLRGLGLPVDLKKGVVVLSQNYTICKTGQAVTPEQAKLLVHFDRKMAEFKLVVLSVWSKDKYQRLA--SEDATTT 224
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Match: K3WRY3_GLOUD (Ribosome assembly factor mrt4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRY3_GLOUD) HSP 1 Score: 194 bits (494), Expect = 4.140e-56 Identity = 103/225 (45.78%), Postives = 154/225 (68.44%), Query Frame = 2
Query: 266 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDETIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEALAEGTNDAM 940
MP+S+R + +LTK KK +LKQ +V VR+ VD Y +++ FSFVN+R+ KEVR+DFR DSRFF+GKNKVM +ALG++E +EY DNL ++S+ L G VGLLFT + +EV YF L+ D A GFV ET+ +P G L + SM+E R LG+ V++++G +V + +C G+ ++PE KLL +D+K+A F + +L WS+GE++ LA+ + +A+
Sbjct: 1 MPKSKRQRTKALTKVDKKTSDLKQKVVESVREAVDSYATLFAFSFVNMRTNHFKEVRMDFR-DSRFFLGKNKVMKVALGRTEAEEYADNLSKISRDLNGNVGLLFTDKTEDEVTEYFNKLSEKDFARSGFVATETVQVPQGPLPQFIGSMVESLRTLGLPVDLKKGNVVLNQDYTICKEGQTLTPEQCKLLVHFDRKMAEFKLVMLSSWSKGEYKRLADASVNAI 224 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1.19.1 >prot_E-siliculosus-1a_F_contig1.19.1 ID=prot_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=229bp MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1:145106..147767+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1.19.1 ID=mRNA_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:145106..147767+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:145106..147767+ >mRNA_E-siliculosus-1a_F_contig1.19.1 ID=mRNA_E-siliculosus-1a_F_contig1.19.1|Name=mRNA_E-siliculosus-1a_F_contig1.19.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:145106..147767+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |