mRNA_E-siliculosus-1a_F_contig1.13.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.13.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.13.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1.13.1 vs. uniprot
Match: D7G6Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y2_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.150e-36
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 MASTTARYEDEEEESSTVPEDVAVRDKAYLEEKGISSLIQGFFDELFQREEPPANPYPELVRRFRIAESAQG 216
            MASTTARYEDEEEESS++ EDVAVRDKAY+EEKGISSLIQGFFDELFQREE PANPYPELVRRFRIAESAQG
Sbjct:    1 MASTTARYEDEEEESSSLREDVAVRDKAYVEEKGISSLIQGFFDELFQREELPANPYPELVRRFRIAESAQG 72
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BLAST of mRNA_E-siliculosus-1a_F_contig1.13.1 vs. uniprot
Match: A0A6H5KQI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.890e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 MASTTARYEDEEEESSTVPEDVAVRDKAYLEEKGISSLIQGFFDELFQREEPPANPYPELVRRFRIAESAQG 216
            MAST AR EDEEEESS V EDVAVRDKAYLEEKGISSLIQGFFD+LFQREE PANPYPELVRRFRIAESAQG
Sbjct:    1 MASTAARDEDEEEESSFVREDVAVRDKAYLEEKGISSLIQGFFDDLFQREELPANPYPELVRRFRIAESAQG 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6Y2_ECTSI1.150e-3693.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQI8_9PHAE2.890e-3191.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:112642..113156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size222
Model size222
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.6477363-CDS-E-siliculosus-1a_F_contig1:112641..1127341622927498.6477363-CDS-E-siliculosus-1a_F_contig1:112641..112734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 112642..112734 +
1696318551.9707966-CDS-E-siliculosus-1a_F_contig1:112641..1127341696318551.9707966-CDS-E-siliculosus-1a_F_contig1:112641..112734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 112642..112734 +
1622927498.6678028-CDS-E-siliculosus-1a_F_contig1:113027..1131561622927498.6678028-CDS-E-siliculosus-1a_F_contig1:113027..113156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 113028..113156 +
1696318551.979262-CDS-E-siliculosus-1a_F_contig1:113027..1131561696318551.979262-CDS-E-siliculosus-1a_F_contig1:113027..113156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 113028..113156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.13.1prot_E-siliculosus-1a_F_contig1.13.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 112642..113156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.13.1

>prot_E-siliculosus-1a_F_contig1.13.1 ID=prot_E-siliculosus-1a_F_contig1.13.1|Name=mRNA_E-siliculosus-1a_F_contig1.13.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
MASTTARYEDEEEESSTVPEDVAVRDKAYLEEKGISSLIQGFFDELFQRE
EPPANPYPELVRRFRIAESAQGE*
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mRNA from alignment at E-siliculosus-1a_F_contig1:112642..113156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.13.1 ID=mRNA_E-siliculosus-1a_F_contig1.13.1|Name=mRNA_E-siliculosus-1a_F_contig1.13.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=515bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:112642..113156+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCGACGACAGCACGCTACGAGGATGAGGAGGAGGAAAGCTCTAC
CGTACCGGAGGACGTTGCCGTTCGCGATAAAGCATACCTCGAGGTGAGTT
GTGTGTCATTTTTGCGATCCTTTTTCTCTTGCGAAGATATGCCGGTCTGT
TGCCTGCGAGTCTGTAAGCTACAGGACAGAGTACCGCATTCAGACATGTG
CACGTACACAGCCGTAGCTTGAATCATCTTTATCTCCAGACTCCAGACTT
GCGCTGCTGTAATCGGGTGACAAAAACACACAGGTGTCCTTGTCTGTTCA
TGGAAAACATGCGGTGCGTACAGCAGTACTCACAACATCAGCACAACGTG
GCCCACATCGATATCACGTGATGCTGCTTTGCTCAGGAGAAGGGCATATC
AAGCCTGATACAAGGCTTCTTCGACGAGCTTTTCCAGCGCGAGGAGCCAC
CAGCCAATCCATATCCCGAACTCGTAAGAAGGTTTAGGATCGCAGAAAGC
GCCCAAGGCGAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:112642..113156+

>mRNA_E-siliculosus-1a_F_contig1.13.1 ID=mRNA_E-siliculosus-1a_F_contig1.13.1|Name=mRNA_E-siliculosus-1a_F_contig1.13.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:112642..113156+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCGACGACAGCACGCTACGAGGATGAGGAGGAGGAAAGCTCTAC
CGTACCGGAGGACGTTGCCGTTCGCGATAAAGCATACCTCGAGATGGCTT
CGACGACAGCACGCTACGAGGATGAGGAGGAGGAAAGCTCTACCGTACCG
GAGGACGTTGCCGTTCGCGATAAAGCATACCTCGAGGAGAAGGGCATATC
AAGCCTGATACAAGGCTTCTTCGACGAGCTTTTCCAGCGCGAGGAGCCAC
CAGCCAATCCATATCCCGAACTCGTAAGAAGGTTTAGGATCGCAGAAAGC
GCCCAAGGCGAGTGAGAGAAGGGCATATCAAGCCTGATACAAGGCTTCTT
CGACGAGCTTTTCCAGCGCGAGGAGCCACCAGCCAATCCATATCCCGAAC
TCGTAAGAAGGTTTAGGATCGCAGAAAGCGCCCAAGGCGAGTGA
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