mRNA_E-fasciculatus_F_contig10552.439.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE) HSP 1 Score: 546 bits (1406), Expect = 6.440e-193 Identity = 269/279 (96.42%), Postives = 274/279 (98.21%), Query Frame = 1
Query: 1 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIPGTTIGNGR 837
QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLG GSVSTKEFQ+CLWDGLGRVVERGHAAD AGGGDEGCALAGSLSKGLCYVN+KMRES SIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVG+AQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKA+ GTT+ NGR
Sbjct: 36 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI) HSP 1 Score: 338 bits (866), Expect = 2.420e-112 Identity = 174/191 (91.10%), Postives = 179/191 (93.72%), Query Frame = 1
Query: 1 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGI 573
+RPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQR+LG GSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCY+NRKMRES SIQA RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG + G G+
Sbjct: 36 ERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQA---RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGKGARKTTGTGM 223
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA) HSP 1 Score: 266 bits (681), Expect = 1.680e-83 Identity = 130/256 (50.78%), Postives = 182/256 (71.09%), Query Frame = 1
Query: 28 LSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVER---GHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKI 786
+ +FQ T+EA ++F++SYL+MHRRN++ VAC S ++FPTPA+E++ SL +G VS+K Q C+ DGL ++ G A+ + + +A +LS+ LC+ +RK+ E+PS+Q R LV+ PD PE+YN+VMN IFSAQKA + VDC +G S F+QQAA +TGG+Y Q + Q + LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C TCGTRA PK +
Sbjct: 32 VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSK-APIAKALSQALCFTHRKITENPSVQT---RLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLL 283
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI) HSP 1 Score: 208 bits (530), Expect = 3.100e-63 Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1
Query: 532 LTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIPGTTIGNGRS 840
L GGLYLEHQGVG+AQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG+HKA+ GTT+ NGRS
Sbjct: 15 LPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANGRS 117
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA) HSP 1 Score: 204 bits (518), Expect = 7.660e-59 Identity = 116/262 (44.27%), Postives = 162/262 (61.83%), Query Frame = 1
Query: 31 SSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLY---LEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 804
S+FQ V +TL+FV +YL++HR N + VA A + +++P +Q + GS S K L ++ G+A +A A+A SLS+ LC++NR +RE ++ R LV+ SPDV + Y S+MN IFSAQK V VD C + E S+FLQQAAYLTGG+Y ++H G + QY+ + +LP S RK LKL +Q SVDFRA CFCHK V+ A+VC VCLS+FCEF P+C+TCG R+ + K+ + K
Sbjct: 53 SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPDA---EQQDTSGSAEQSAKVNTSVLQ----KLRALGNAPIDASK-PNATAIAASLSRALCFINRAIREQSDLRP---RVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQK 301
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA) HSP 1 Score: 203 bits (516), Expect = 1.070e-58 Identity = 113/259 (43.63%), Postives = 160/259 (61.78%), Query Frame = 1
Query: 34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKIKRGK 798
+FQ + +TL+FV SYL++HR N + +A A +S +++P PA + + GS S K + R+ E + + A+A SLS+ LC++NR M E P ++ R LV+ SPDV E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + + G+ QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ A+VC VCLS+FC+F P+C+TCG R+ P K+GK
Sbjct: 42 NFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHDD---TSGSAEQSAKVNAVVMQ----RLQELSDTPMDCTKPNR-TAIAASLSRALCFINRAMNEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGK 289
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA) HSP 1 Score: 202 bits (513), Expect = 3.160e-58 Identity = 111/269 (41.26%), Postives = 162/269 (60.22%), Query Frame = 1
Query: 13 SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIP 813
+G + Q + +TL+FV SYL++HR N + +A A +S +++P P ++ + GS + K + R+ E A + + A+A +LS+ LC++NR + E P ++ R LV+ SPD+ E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + + G+ QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ AYVC VCLS+FCEF P+C+TCG R+ + K G K P
Sbjct: 37 AGPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP---NQEDTSGSAEQAAKVNAGVMQ----RLQELSDAPLDPAKPNR-TAIAAALSRSLCFINRAINEEPELKP---RILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGLMKKRP 294
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM) HSP 1 Score: 202 bits (513), Expect = 3.250e-58 Identity = 114/268 (42.54%), Postives = 162/268 (60.45%), Query Frame = 1
Query: 16 GEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHQGV-GIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIP 813
G + Q + +TL+FV SYL++HR N + +A A +S +++P P E+E S G+ + K + R+ + A + + A+A S+S+ LC++NR + E P ++ R LV+ SPDV E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + G G+ QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ AYVC VCLS+FCEF P+C+TCG R+ + K G K P
Sbjct: 39 GAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP--EQEDTS-GNAEQAAKVNAGVMQ----RLQQLSDAPLDPAKPNR-TAIAASISRALCFINRAINEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGVLKKRP 295
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE) HSP 1 Score: 201 bits (511), Expect = 6.630e-58 Identity = 115/266 (43.23%), Postives = 162/266 (60.90%), Query Frame = 1
Query: 13 SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 804
+G + Q + +TL+FV SYL++HR N + +A A +S +++P P E+E S GS + K + R+ E A + + A+A SLS+ LC++NR + E P ++ R LV+ SPDV E Y ++MN IFSAQK V VD +L E S+F+QQAAYLTGG+Y + + G+ QY+ A +LP S RK LKL +Q SVDFRA CFCH+ V+ A+VC VCLS+FCEF P+C+TCG R+ + K G K
Sbjct: 39 AGTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNP--EQEDTS-GSAEQAAKVNAGVMQ----RLQELSDAPLDNAKTNR-TAIAASLSRALCFINRAIHEDPELRP---RILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLK 293
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD) HSP 1 Score: 201 bits (512), Expect = 6.860e-58 Identity = 113/258 (43.80%), Postives = 159/258 (61.63%), Query Frame = 1
Query: 34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAG---GGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKR 792
+FQ V +TL+FV SYL++HR N + +A A ++ +++P P + + GS S K +V+++ A E A+A S+S+ LC++NR + E ++ R LV+ SPDV E Y S+MN IFSAQK GV VD VL + S+FLQQAAYLTGG+Y + + G+ QY+ + +LP S RK LKL +Q SVDFRA CFCHKRV+ A+VC VCLS+FCEF P+C+TCG R+ + K+
Sbjct: 58 AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDP---NQGDTSGSAEQSAKVNA--------KVMQKLQALSELPVDPAKPNATAIAASISRALCFINRAINEQSDLRP---RILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKK 301 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10552.439.1 >prot_E-fasciculatus_F_contig10552.439.1 ID=prot_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=260bp MFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEback to top mRNA from alignment at E-fasciculatus_F_contig10552:698..4278- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10552.439.1 ID=mRNA_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10552:698..4278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10552:698..4278- >mRNA_E-fasciculatus_F_contig10552.439.1 ID=mRNA_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10552:698..4278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |