mRNA_E-fasciculatus_F_contig10552.439.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10552.439.1
Unique NamemRNA_E-fasciculatus_F_contig10552.439.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 546 bits (1406), Expect = 6.440e-193
Identity = 269/279 (96.42%), Postives = 274/279 (98.21%), Query Frame = 1
Query:    1 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIPGTTIGNGR 837
            QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLG GSVSTKEFQ+CLWDGLGRVVERGHAAD AGGGDEGCALAGSLSKGLCYVN+KMRES SIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVG+AQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKA+ GTT+ NGR
Sbjct:   36 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 2.420e-112
Identity = 174/191 (91.10%), Postives = 179/191 (93.72%), Query Frame = 1
Query:    1 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGI 573
            +RPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQR+LG GSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCY+NRKMRES SIQA   RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG    +  G G+
Sbjct:   36 ERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQA---RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGKGARKTTGTGM 223          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.680e-83
Identity = 130/256 (50.78%), Postives = 182/256 (71.09%), Query Frame = 1
Query:   28 LSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVER---GHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKI 786
            + +FQ T+EA ++F++SYL+MHRRN++  VAC    S ++FPTPA+E++  SL +G VS+K  Q C+ DGL  ++     G A+ +     +   +A +LS+ LC+ +RK+ E+PS+Q    R LV+   PD PE+YN+VMN IFSAQKA + VDC  +G  S F+QQAA +TGG+Y   Q   + Q +    LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C TCGTRA PK +
Sbjct:   32 VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSK-APIAKALSQALCFTHRKITENPSVQT---RLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLL 283          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 3.100e-63
Identity = 96/103 (93.20%), Postives = 100/103 (97.09%), Query Frame = 1
Query:  532 LTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIPGTTIGNGRS 840
            L GGLYLEHQGVG+AQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG+HKA+ GTT+ NGRS
Sbjct:   15 LPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANGRS 117          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 7.660e-59
Identity = 116/262 (44.27%), Postives = 162/262 (61.83%), Query Frame = 1
Query:   31 SSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLY---LEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 804
            S+FQ  V +TL+FV +YL++HR N +  VA  A  + +++P      +Q + GS   S K     L     ++   G+A  +A       A+A SLS+ LC++NR +RE   ++    R LV+  SPDV + Y S+MN IFSAQK  V VD C +  E S+FLQQAAYLTGG+Y   ++H G  + QY+ + +LP  S RK LKL +Q SVDFRA CFCHK V+  A+VC VCLS+FCEF P+C+TCG R+  +  K+ + K
Sbjct:   53 SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPDA---EQQDTSGSAEQSAKVNTSVLQ----KLRALGNAPIDASK-PNATAIAASLSRALCFINRAIREQSDLRP---RVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQK 301          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.070e-58
Identity = 113/259 (43.63%), Postives = 160/259 (61.78%), Query Frame = 1
Query:   34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKIKRGK 798
            +FQ  + +TL+FV SYL++HR N +  +A  A +S +++P PA +    + GS   S K     +     R+ E      +    +   A+A SLS+ LC++NR M E P ++    R LV+  SPDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y + +   G+ QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  A+VC VCLS+FC+F P+C+TCG R+   P   K+GK
Sbjct:   42 NFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHDD---TSGSAEQSAKVNAVVMQ----RLQELSDTPMDCTKPNR-TAIAASLSRALCFINRAMNEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGK 289          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.160e-58
Identity = 111/269 (41.26%), Postives = 162/269 (60.22%), Query Frame = 1
Query:   13 SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIP 813
            +G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P P    ++ + GS   + K     +     R+ E   A  +    +   A+A +LS+ LC++NR + E P ++    R LV+  SPD+ E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y + +   G+ QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+  +  K G  K  P
Sbjct:   37 AGPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP---NQEDTSGSAEQAAKVNAGVMQ----RLQELSDAPLDPAKPNR-TAIAAALSRSLCFINRAINEEPELKP---RILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGLMKKRP 294          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 202 bits (513), Expect = 3.250e-58
Identity = 114/268 (42.54%), Postives = 162/268 (60.45%), Query Frame = 1
Query:   16 GEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHQGV-GIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIP 813
            G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P P  E+E  S G+   + K     +     R+ +   A  +    +   A+A S+S+ LC++NR + E P ++    R LV+  SPDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y +  G  G+ QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+  +  K G  K  P
Sbjct:   39 GAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP--EQEDTS-GNAEQAAKVNAGVMQ----RLQQLSDAPLDPAKPNR-TAIAASISRALCFINRAINEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNGVLKKRP 295          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 201 bits (511), Expect = 6.630e-58
Identity = 115/266 (43.23%), Postives = 162/266 (60.90%), Query Frame = 1
Query:   13 SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 804
            +G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P P  E+E  S GS   + K     +     R+ E   A  +    +   A+A SLS+ LC++NR + E P ++    R LV+  SPDV E Y ++MN IFSAQK  V VD  +L  E S+F+QQAAYLTGG+Y + +   G+ QY+ A +LP  S RK LKL +Q SVDFRA CFCH+ V+  A+VC VCLS+FCEF P+C+TCG R+  +  K G  K
Sbjct:   39 AGTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNP--EQEDTS-GSAEQAAKVNAGVMQ----RLQELSDAPLDNAKTNR-TAIAASLSRALCFINRAIHEDPELRP---RILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCEFRPICSTCGIRSHIQPKKTGMLK 293          
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 201 bits (512), Expect = 6.860e-58
Identity = 113/258 (43.80%), Postives = 159/258 (61.63%), Query Frame = 1
Query:   34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKEFQDCLWDGLGRVVERGHAADEAG---GGDEGCALAGSLSKGLCYVNRKMRESPSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKR 792
            +FQ  V +TL+FV SYL++HR N +  +A  A ++ +++P P    +  + GS   S K           +V+++  A  E           A+A S+S+ LC++NR + E   ++    R LV+  SPDV E Y S+MN IFSAQK GV VD  VL  + S+FLQQAAYLTGG+Y + +   G+ QY+ + +LP  S RK LKL +Q SVDFRA CFCHKRV+  A+VC VCLS+FCEF P+C+TCG R+  +  K+
Sbjct:   58 AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDP---NQGDTSGSAEQSAKVNA--------KVMQKLQALSELPVDPAKPNATAIAASISRALCFINRAINEQSDLRP---RILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKK 301          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10552.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE6.440e-19396.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI2.420e-11291.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA1.680e-8350.78Putative general transcription factor IIH subunit ... [more]
D7FYW4_ECTSI3.100e-6393.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6XQC8_9STRA7.660e-5944.27Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VU71_9STRA1.070e-5843.63Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A421GZV4_9STRA3.160e-5841.26Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GBC5_PHYRM3.250e-5842.54Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
M4BTB8_HYAAE6.630e-5843.23Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K3WG36_GLOUD6.860e-5843.80Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10552contigE-fasciculatus_F_contig10552:698..4278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue2.1e-79
Seed eggNOG ortholog2880.D7FYW3
Preferred nameTFB4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K03143
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03022,ko03420,ko04714,ko04723,ko04923,ko05203,map00561,map01100,map03022,map03420,map04714,map04723,map04923,map05203
KEGG ModuleM00098,M00290
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5242@1,KOG2487@2759
EC3.1.1.23
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
Exons6
Model size1294
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10552.439.1prot_E-fasciculatus_F_contig10552.439.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10552 1149..4215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.2519555-UTR-E-fasciculatus_F_contig10552:697..11481622927553.2519555-UTR-E-fasciculatus_F_contig10552:697..1148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10552 698..1148 -
1695995592.2749732-UTR-E-fasciculatus_F_contig10552:697..11481695995592.2749732-UTR-E-fasciculatus_F_contig10552:697..1148Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10552 698..1148 -
1622927553.3582642-UTR-E-fasciculatus_F_contig10552:4215..42781622927553.3582642-UTR-E-fasciculatus_F_contig10552:4215..4278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10552 4216..4278 -
1695995592.3643835-UTR-E-fasciculatus_F_contig10552:4215..42781695995592.3643835-UTR-E-fasciculatus_F_contig10552:4215..4278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10552 4216..4278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.2644513-CDS-E-fasciculatus_F_contig10552:1148..12871622927553.2644513-CDS-E-fasciculatus_F_contig10552:1148..1287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 1149..1287 -
1695995592.2885737-CDS-E-fasciculatus_F_contig10552:1148..12871695995592.2885737-CDS-E-fasciculatus_F_contig10552:1148..1287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 1149..1287 -
1622927553.2767282-CDS-E-fasciculatus_F_contig10552:1691..18571622927553.2767282-CDS-E-fasciculatus_F_contig10552:1691..1857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 1692..1857 -
1695995592.2981-CDS-E-fasciculatus_F_contig10552:1691..18571695995592.2981-CDS-E-fasciculatus_F_contig10552:1691..1857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 1692..1857 -
1622927553.2900903-CDS-E-fasciculatus_F_contig10552:2427..25841622927553.2900903-CDS-E-fasciculatus_F_contig10552:2427..2584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 2428..2584 -
1695995592.307641-CDS-E-fasciculatus_F_contig10552:2427..25841695995592.307641-CDS-E-fasciculatus_F_contig10552:2427..2584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 2428..2584 -
1622927553.308279-CDS-E-fasciculatus_F_contig10552:3123..32331622927553.308279-CDS-E-fasciculatus_F_contig10552:3123..3233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 3124..3233 -
1695995592.3171601-CDS-E-fasciculatus_F_contig10552:3123..32331695995592.3171601-CDS-E-fasciculatus_F_contig10552:3123..3233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 3124..3233 -
1622927553.3233967-CDS-E-fasciculatus_F_contig10552:3868..40021622927553.3233967-CDS-E-fasciculatus_F_contig10552:3868..4002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 3869..4002 -
1695995592.3285284-CDS-E-fasciculatus_F_contig10552:3868..40021695995592.3285284-CDS-E-fasciculatus_F_contig10552:3868..4002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 3869..4002 -
1622927553.3451478-CDS-E-fasciculatus_F_contig10552:4141..42151622927553.3451478-CDS-E-fasciculatus_F_contig10552:4141..4215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 4142..4215 -
1695995592.3411767-CDS-E-fasciculatus_F_contig10552:4141..42151695995592.3411767-CDS-E-fasciculatus_F_contig10552:4141..4215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10552 4142..4215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10552.439.1

>prot_E-fasciculatus_F_contig10552.439.1 ID=prot_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=260bp
MFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGSGSVSTKE
FQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYVNRKMRESP
SIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTF
LQQAAYLTGGLYLEHQGVGIAQYMFATFLPSQSCRKYLKLRTQQSVDFRA
ACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAIP
GTTIGNGRS*
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mRNA from alignment at E-fasciculatus_F_contig10552:698..4278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10552.439.1 ID=mRNA_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10552:698..4278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCGACCGGAGTCAGGCGAGGTGAAGCTGTCGTCCTTCCAAGACACGGT GGAGGCTACTCTCATGTTCGTTGAGAGCTACCTCATGATGCATAGACGAA ACGAGGTGTGCTTCGTCGCCTGCACTGCACGGGAAAGGTGATCTTGTGCT TTCAGCAGCAACGTGGATGGCCGCAGATTATGTTTGCGAGGACTACTTGC CTCTGACCTCCATACTTGTGCAGCCCTCAAGGCGTTTTTGTTCACGTCTT CCACGTCCGCGTCGTGTGTGACTCAGCACCATCATCTTCCCTACCCCCGC TATGGAGCGGGAGCAGCGATCGCTTGGCAGCGGTTCCGTGAGCACCAAGG AGTTCCAAGACTGCCTGTGGGATGGGCTAGGTCGAGTAGTCGAGAGGGGT CACGCGGCAGGTAAGGCAAAACCAGACCTCCCGTCGATGAGAAGTCCACA TGAGATGTGTGCGTCCAACCCCCCCCCGCTGTCTCACTCCCCCAACAATA GGTACAATAGACAATAGAGACGCATCATTTGTGGTCTCGTGGCTTCGAAT GAAAACAGCTAGAATTACGTATGTGGTGACGCCTTCCACGGCATTGGAGA TTCCCTGCGACTGGACTACGACGATTGCTAATAAGTTGATTAGACGTAAT TGAAGTCGAGGGTGCCTGTTCATGTTTGTTAGTTGGTGAGCTCGACACCG CTGCAAGTTACACCTACCGGCACCATTTCATTATACCACTTTTAGAGGCT ACCACTGTTTTCACACGTGGTGTTTTTTTCTCCTGTTGTGTGAGGACATG AAAGCGCTTGCTGGCCCTTGCATAGAACTGTCCATTGGTGCAACGCTAAC AAAGCCAGATGGTCAGTTTCGGTTAAAGTTTTTGGCCGATGTAGTCCACA GTCGGTGCCCTGGCTGTGTATGTGACCAATCGACGCTTAATATTCCTCCT ATTGTCCCCTATGGGCTTTCGCCCTCGCCCTTCTGTCGCTGCAAATGCCC GGCCTTCCATTCCCTTGTTCTTGGTTTTCGATTTCCCTCCCGAAGATGAG GCGGGTGGAGGGGACGAGGGGTGCGCTCTGGCGGGAAGCCTGTCGAAGGG CCTGTGCTACGTTAACCGAAAAATGCGCGAGTCCCCGTCGATCCAGGCAA GCCCAGTGCATTGATCTCGAGGGCGCCTAGGAGGGCTTCGGCCGTTGACT CCCGCATCTTTTTCTTTTTTTTTGCTGCTGGATTCCCAGTAACTGCCGCC GCTTCTGCTGCCGCTCATTTTTGGCCGGAGCAAGCGCAGCTATCTTTGCT TATCAGAAAGGTCGACGACCTTCAAACCCTGAAGCACAAATGTGATGAAG CACAAAGGTGACCTAGGCGCAATACGTTTCACCGCTTTGAGTTCATCTGA CGCTTGCTGGTCCCAACGTCCCCACGCGCTTTGGACGAGGCTCTCTCCCT CTCTATTTGCACAAGGATATATATATGTATATATGCAAAGGCCACCTGCA CTTTTCTTTGCGCCCAACAGGCTGGGCTGGATGCTGCCGTCAAGTTTTCG GCAGTACCACATAACAGATGCACCGGAGGCGTGTCTTCCAAGGAGGATAA CTTCGCCGTACCCTATAGGCAACCACTTACTACACCGTCGCGCCCACCCA TTCCCCCCGCCCCCGCGTTTGGTTTCCGCAACAACGAACCGCAGGCGCGG GCTCTGGTCCTGTCGGGATCACCGGACGTTCCGGAGACGTACAACTCGGT CATGAACGCGATATTCTCGGCGCAGAAGGCCGGGGTTCTCGTGGACTGCG CCGTGCTAGGCGAGTCGTCCACGTTCCTTCAGCAAGCGGCCTACCTCACG GGTAAGGGGGGCAGGGAACCAACCGGCACAAGCCTGTAGCATTTGACGCG TTCAAGGGGTGGGTAGAGTTGCAAATCGGAGCTTGGCCGTTGATCTCTCA CGATGTGTAGCCAGCTCCTTTTTCTGATACGGAAAGCTTCGGCCCATTCT TCGTAGAGGTCGTTTCTGGGTGGAAATTATCTTGTTTGTGTCGTGTTTGC TCGAGAGCGTTTGGGACTCTCCTGTGGAATACGGACGTTATTCCTCTTGC GCTGGCGTCGAATGACTTGCAACTTGCAACTCATTTTCACAGTGCCCGGA CCTGTCAATTGTTGCCGGACAGAGACTGTCGATATGTTTCCGTGATTTGT GCGGATACGATGAGAGATGGAGTTCTGATGGGGTGCAGCACGCCGGCTGA CCGTGTGGAAACATGATGCCCGTCCATTCCAGTGCATTGTGACCTGTGCG AGCCCCCTCCGAGGACGGGTGTGTGAATGTAATTATGGATGCATGAGCCC TCTTCTTTCCCCGACTGCCGTACAATTGATGGTTGGAACGCTGCCATTTG CTGTTTTTCATGTTTTGCCAGGCGGGCTGTACCTGGAACACCAAGGAGTC GGCATCGCGCAGTATATGTTTGCCACTTTCTTACCGAGTCAGAGCTGCCG CAAGTACCTCAAGCTTCGAACGCAGCAGAGCGTGGACTTCAGGGCGGCAT GCTTCTGCCACAAGCGCGTCGTGGACATCGCTTACGTGTGAGAGAAGGCT ACCTTATGCTAGCACTCTGGCCGACTCCTTGGTTTCTATCTTGGGTGTCA GGGACACCGTGCCACCCATGGTTGCCAGCGCCAATGCTGTTCTCGAGTAT TGGAATGTTATCGAAATCGATGGTATCCTCCTTGGCTAGACCGACTTGCA ATGTGAAAGTGCGTGTTCTCTCGGCGATCGTTCTGGTCCTCTGGTGGTGC AAGCTGGTGGCATTCAATGCTTCGATGTTTGCACAGGAGGAGCTCGAAGT ATCCTTGACGGCGGGGTATGCAATGCTAGATATGGGTTACTTGAAATTGT AAACGTCCCACTCTCTGCCCACGACGCCTGTGTCCTGCCGTCTGCTTGCT ATTGTTCGCTTGTGTGTGGTTATGTGGCCATTTCTTCGCAGGTGCTCGGT GTGCCTGTCTGTGTTTTGTGAGTTCTCGCCAGTCTGCACGACGTGCGGCA CGCGGGCTTGGCCGAAGAAGATCAAGCGGGGCAAGCACAAGGCTATTCCA GGGACGACCATTGGCAATGGTCGTTCGTGAGAGCGCCAAGCACATCAGGA TCGAGCGAGGGCGTCCATAATCACATCTCAGACTTCTTTACCATTGGTTG AGGATTCCGCTGAATCAGTTCGCCGAGGTTGAATTTTTACATGCGTCTTC CGTGGCGTTTCGCGCTTTATCAGAAGGCTCGATGTACACTAGTGGAGAGC AGCCGATTTACCGTGTAGAGTGCTCAAGTTATCACAATACCTTTATATGT ACCCTCGAGCGTTTCCCAAAAGCTCGATTTCTCCACGACGAGGAGGATGC CTAAACCAAGCCGTAAGTTTTTCTCGACGAGATGGTTCCAATGCCACCGT TCGTCAAGCCACCGTTCCCGGCGCCATCATTGCTACGGTGGTTGCAGAGT AATCAACATTTGCAAAACCGGTCCAGGGGGGTCTTACGCAGCAGCCTACG GCAGGTATTCGGGTGTTTGTAGGCAACGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10552:698..4278-

>mRNA_E-fasciculatus_F_contig10552.439.1 ID=mRNA_E-fasciculatus_F_contig10552.439.1|Name=mRNA_E-fasciculatus_F_contig10552.439.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10552:698..4278- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCGTTGAGAGCTACCTCATGATGCATAGACGAAACGAGGTGTGCTT
CGTCGCCTGCACTGCACGGGAAAGATGTTCGTTGAGAGCTACCTCATGAT
GCATAGACGAAACGAGGTGTGCTTCGTCGCCTGCACTGCACGGGAAAGCA
CCATCATCTTCCCTACCCCCGCTATGGAGCGGGAGCAGCGATCGCTTGGC
AGCGGTTCCGTGAGCACCAAGGAGTTCCAAGACTGCCTGTGGGATGGGCT
AGGTCGAGTAGTCGAGAGGGGTCACGCGGCAGCACCATCATCTTCCCTAC
CCCCGCTATGGAGCGGGAGCAGCGATCGCTTGGCAGCGGTTCCGTGAGCA
CCAAGGAGTTCCAAGACTGCCTGTGGGATGGGCTAGGTCGAGTAGTCGAG
AGGGGTCACGCGGCAGATGAGGCGGGTGGAGGGGACGAGGGGTGCGCTCT
GGCGGGAAGCCTGTCGAAGGGCCTGTGCTACGTTAACCGAAAAATGCGCG
AGTCCCCGTCGATCCAGGCAAGCCCAATGAGGCGGGTGGAGGGGACGAGG
GGTGCGCTCTGGCGGGAAGCCTGTCGAAGGGCCTGTGCTACGTTAACCGA
AAAATGCGCGAGTCCCCGTCGATCCAGGCAAGCCCAGCGCGGGCTCTGGT
CCTGTCGGGATCACCGGACGTTCCGGAGACGTACAACTCGGTCATGAACG
CGATATTCTCGGCGCAGAAGGCCGGGGTTCTCGTGGACTGCGCCGTGCTA
GGCGAGTCGTCCACGTTCCTTCAGCAAGCGGCCTACCTCACGGGCGCGGG
CTCTGGTCCTGTCGGGATCACCGGACGTTCCGGAGACGTACAACTCGGTC
ATGAACGCGATATTCTCGGCGCAGAAGGCCGGGGTTCTCGTGGACTGCGC
CGTGCTAGGCGAGTCGTCCACGTTCCTTCAGCAAGCGGCCTACCTCACGG
GCGGGCTGTACCTGGAACACCAAGGAGTCGGCATCGCGCAGTATATGTTT
GCCACTTTCTTACCGAGTCAGAGCTGCCGCAAGTACCTCAAGCTTCGAAC
GCAGCAGAGCGTGGACTTCAGGGCGGCATGCTTCTGCCACAAGCGCGTCG
TGGACATCGCTTACGTGCGGGCTGTACCTGGAACACCAAGGAGTCGGCAT
CGCGCAGTATATGTTTGCCACTTTCTTACCGAGTCAGAGCTGCCGCAAGT
ACCTCAAGCTTCGAACGCAGCAGAGCGTGGACTTCAGGGCGGCATGCTTC
TGCCACAAGCGCGTCGTGGACATCGCTTACGTGTGCTCGGTGTGCCTGTC
TGTGTTTTGTGAGTTCTCGCCAGTCTGCACGACGTGCGGCACGCGGGCTT
GGCCGAAGAAGATCAAGCGGGGCAAGCACAAGGCTATTCCAGGGACGACC
ATTGGCAATGGTCGTTCGTGAGTGCTCGGTGTGCCTGTCTGTGTTTTGTG
AGTTCTCGCCAGTCTGCACGACGTGCGGCACGCGGGCTTGGCCGAAGAAG
ATCAAGCGGGGCAAGCACAAGGCTATTCCAGGGACGACCATTGGCAATGG
TCGTTCGTGA
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