mRNA_E-fasciculatus_F_contig10026.43.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10026.43.1
Unique NamemRNA_E-fasciculatus_F_contig10026.43.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6H5L599_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L599_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 5.710e-55
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264
            RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAIL+CPVDCIHYVD+PELVRLEKEREGISINFKAKLVGND
Sbjct:  330 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILSCPVDCIHYVDFPELVRLEKEREGISINFKAKLVGND 417
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6U4KL70_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KL70_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.150e-37
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGN 261
            RFVYVDEY+CIGCTHC   AP TFFME++ GRARV+QQG D    ++TA+  CPVDCIHYV W ELV LE+EREG+ INFK +LVG+
Sbjct:  154 RFVYVDEYSCIGCTHCASHAPETFFMEDDNGRARVFQQGGDAMNVIRTAVSLCPVDCIHYVPWEELVELEQEREGLDINFKGRLVGS 240
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: W7TYZ0_9STRA (Ferredoxin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYZ0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.800e-37
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264
            RFVYVDEYTCIGCT+C   AP+TF+M++E GRARV+QQ +D    +QTAI TCPVDCIHYV + EL RLEKER G++IN+KA+LVG+D
Sbjct:  110 RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSD 197
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A4D9D529_9STRA (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D529_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.150e-36
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264
            RFVYVDEYTCIGCT+C   AP+TF+M++E GRARV+QQ +D    +QTAI TCPVDCIHYV + EL RLEKER G++IN+KA+LVG+D
Sbjct:  110 RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSD 197
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6V1QAL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QAL3_HETAK)

HSP 1 Score: 130 bits (328), Expect = 6.580e-35
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGIS-INFKAKLVGND 264
            RFVYVDEYTCIGCT+C   A +TFFMEEEFGRARV+ Q  D  E VQ A+ TCPVDCIH+V WPEL +LE ER G++ INFKA+LVG D
Sbjct:  200 RFVYVDEYTCIGCTNCAAVAQNTFFMEEEFGRARVFLQNGDDDETVQIAVETCPVDCIHFVPWPELQKLELERAGMTEINFKARLVGGD 288
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S2V2F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.900e-30
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   34 GCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264
            GCT+C   A +TFFMEEE+GRARVYQQ  D  E +Q AI TCPVDCIH+V W ELV+LE ER G  INFKA+LVGN+
Sbjct:    1 GCTNCAMIASNTFFMEEEYGRARVYQQAGDAEEVIQIAIETCPVDCIHFVPWNELVKLETERRGQVINFKARLVGNE 77
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S3REM5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3REM5_9SPIT)

HSP 1 Score: 116 bits (291), Expect = 2.220e-30
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264
            +FV+VDE+ CIGCT+C   A STFFME ++GRARV+QQG D  E +  A+ +CPV+CIHYV + +L  LE+ERE   INFKA+LVG D
Sbjct:    5 KFVWVDEHACIGCTYCASLARSTFFMEPDYGRARVFQQGHDPEEVIDEAVASCPVNCIHYVPYSDLKILEEERESQVINFKARLVGGD 92
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BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S0CHH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHH8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.830e-30
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    7 VYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255
            VYVDE TCIGCT C   A STFFME+E GRARV+QQ  D  E +Q AI TCPVDCIHY+ + EL+RLE ER   +INFKA+LV
Sbjct:   51 VYVDEVTCIGCTMCATAAMSTFFMEDEHGRARVFQQWGDDDETIQIAIDTCPVDCIHYIPYEELMRLEIERREQNINFKARLV 133
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S2ENQ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENQ4_TRICV)

HSP 1 Score: 118 bits (295), Expect = 3.660e-30
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255
            + VYVDE+TCIGCT+C   A STFFM EE GRARV+QQ  D  E +Q AI TCPVDCIHYV + ELVRLE ER   +INFKA+LV
Sbjct:  178 QMVYVDEHTCIGCTNCAMIAQSTFFMHEEHGRARVFQQWGDDDETIQVAIETCPVDCIHYVPYDELVRLEVERRDQNINFKARLV 262
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S0FI65_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FI65_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.420e-30
Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255
            + VYVDE TCIGCT+C   A STFFM+ E GRARV+QQ  D  E +  AI TCPVDCIHYV + ELVRLE ER    INFKA+LV
Sbjct:   23 QMVYVDEVTCIGCTNCAMIAQSTFFMDSEHGRARVFQQWGDDTETIAVAIETCPVDCIHYVPYDELVRLEVERRDQQINFKARLV 107
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L599_9PHAE5.710e-5597.734Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A6U4KL70_9STRA1.150e-3767.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TYZ0_9STRA3.800e-3768.18Ferredoxin n=2 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A4D9D529_9STRA8.150e-3668.184Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A6V1QAL3_HETAK6.580e-3569.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V2F7_9STRA1.900e-3067.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3REM5_9SPIT2.220e-3059.09Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0CHH8_9STRA2.830e-3066.27Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2ENQ4_TRICV3.660e-3067.06Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0FI65_9STRA5.420e-3064.71Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10026contigE-fasciculatus_F_contig10026:2274..3277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue5.6e-45
Seed eggNOG ortholog2880.D7G6I4
KEGG koko:K01265,ko:K05337,ko:K08244
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-dependent protein binding
EggNOG OGsCOG0484@1,KOG0716@2759
EC2.7.9.4,3.4.11.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.8126702-CDS-E-fasciculatus_F_contig10026:2273..24081622927504.8126702-CDS-E-fasciculatus_F_contig10026:2273..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10026 2274..2408 +
1695995567.395786-CDS-E-fasciculatus_F_contig10026:2273..24081695995567.395786-CDS-E-fasciculatus_F_contig10026:2273..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10026 2274..2408 +
1622927504.8226342-CDS-E-fasciculatus_F_contig10026:3148..32771622927504.8226342-CDS-E-fasciculatus_F_contig10026:3148..3277Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10026 3149..3277 +
1695995567.4086878-CDS-E-fasciculatus_F_contig10026:3148..32771695995567.4086878-CDS-E-fasciculatus_F_contig10026:3148..3277Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10026 3149..3277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10026.43.1prot_E-fasciculatus_F_contig10026.43.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10026 2274..3277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10026.43.1

>prot_E-fasciculatus_F_contig10026.43.1 ID=prot_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAI
LTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND
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mRNA from alignment at E-fasciculatus_F_contig10026:2274..3277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10026.43.1 ID=mRNA_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1004bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10026:2274..3277+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCGTGTACGTGGACGAGTACACCTGCATAGGGTGCACGCACTGCAA
CCACGAGGCCCCGTCTACGTTCTTCATGGAGGAGGAGTTCGGCCGGGCGA
GGGTCTACCAGCAGGGCAGAGACACGGCTGAAGCGGTAAGTTAACGCCAG
GAGTTCCTGGCCGAAAAACTTGGTCGGGTCTTGAGTCAGTCTTGAGTTAC
AGCAGTATTATATAGTTGTCGTGTCTTCCTCGTCGGCACCAAGGAAAAAA
AATATTCTCATTCCTCTGCTTGCCGACATTCATTTTTTTTTTTATGTTCG
TTATAGCACCCGTTCACCGTTGCTGCCGTTAGTTATCCTTTCGGATTTCG
ATTTTGATATTCTCTGGTGTGGTTCGTTGCTGCACCCATTCGCTGCTTGC
CGTTATCCACTCGATGGGTGCAGCTTGCCGTTATCCACTCGATATTTTGA
TGATTTCTCATGCTCGCTCCCTTGGTGTTTTTGGGTCTGTCTGTCCCAAC
TGTGCACGCCCCTCCCCCCCTCGCACTCTCCCATATGGTCGTTCGCCCCG
AAACCCGTCCGCCTATTACTTTACGTCCACCCCGGAAGGCTTTGCCAGCA
AGCACCTTCGGCGGAGCCAATCAACCAATCATCATGGCACCGATGTTTGT
GTATTGTTGAGCGCCTAGAATACATCTTGATTTTTTTTTTTAATGACAGC
AGCAGCAGCAGCAACAAAAGCAACAGCCCCGGGAACCCTATGCCAGCACC
TTCAAATCGGGGGAGCCAACCCAAAAACTAGTGCCTCCAAGTCAAGATGG
CACTATGTACAACGTGTAGAACGCCTGGAACACATCTTGACGTCTTTTTT
TTTGTCCTACCCCCGTTTTTCGCAGGTGCAAACCGCGATCCTGACGTGTC
CTGTGGACTGCATCCACTATGTCGACTGGCCGGAGCTGGTCAGGCTGGAG
AAGGAGAGGGAGGGGATCAGCATCAACTTCAAGGCCAAGCTTGTCGGCAA
CGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10026:2274..3277+

>mRNA_E-fasciculatus_F_contig10026.43.1 ID=mRNA_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10026:2274..3277+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTCGTGTACGTGGACGAGTACACCTGCATAGGGTGCACGCACTGCAA
CCACGAGGCCCCGTCTACGTTCTTCATGGAGGAGGAGTTCGGCCGGGCGA
GGGTCTACCAGCAGGGCAGAGACACGGCTGAAGCGAGGTTCGTGTACGTG
GACGAGTACACCTGCATAGGGTGCACGCACTGCAACCACGAGGCCCCGTC
TACGTTCTTCATGGAGGAGGAGTTCGGCCGGGCGAGGGTCTACCAGCAGG
GCAGAGACACGGCTGAAGCGGTGCAAACCGCGATCCTGACGTGTCCTGTG
GACTGCATCCACTATGTCGACTGGCCGGAGCTGGTCAGGCTGGAGAAGGA
GAGGGAGGGGATCAGCATCAACTTCAAGGCCAAGCTTGTCGGCAACGACG
TGCAAACCGCGATCCTGACGTGTCCTGTGGACTGCATCCACTATGTCGAC
TGGCCGGAGCTGGTCAGGCTGGAGAAGGAGAGGGAGGGGATCAGCATCAA
CTTCAAGGCCAAGCTTGTCGGCAACGAC
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