mRNA_E-fasciculatus_F_contig1624.4247.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1624.4247.1
Unique NamemRNA_E-fasciculatus_F_contig1624.4247.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 5.650e-141
Identity = 223/236 (94.49%), Postives = 227/236 (96.19%), Query Frame = 1 
Query:   25 RYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACSD-TPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            RYTRGSLQVLNQLKLPHETEY+DVRGA DAFDAIKTMMVRGAPLIAIVAALGLAVEA S  T NGTAQEASSMLHEKLD+LKTSRETAVNLANACDALKTTISGEAAREGSTW STVEAFVGAAE MLEED+AANRRQGGYAVEALLSEPSCK KARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLA+CYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG V
Sbjct:    9 RYTRGSLQVLNQLKLPHETEYMDVRGAEDAFDAIKTMMVRGAPLIAIVAALGLAVEASSGATQNGTAQEASSMLHEKLDYLKTSRETAVNLANACDALKTTISGEAAREGSTWSSTVEAFVGAAEAMLEEDIAANRRQGGYAVEALLSEPSCKGKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGKV 244
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A6H5JD08_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD08_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 6.980e-139
Identity = 225/238 (94.54%), Postives = 227/238 (95.38%), Query Frame = 1 
Query:   13 RNVGRYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACSD-TPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG 723
            R VG YTRGSLQVLNQLKLPHETEYVDVRGA DAFDAIKTMMVRGAPLIAIVAALGLAVEACS  T NGTAQEASSMLHEKLD+LKTSRETAVNLANACDALKTTISGEAAREGSTW STVEAFVGAAE MLEEDVAANRRQGGYAVEAL  EPSCK KARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLA+CYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG
Sbjct:    6 RCVG-YTRGSLQVLNQLKLPHETEYVDVRGAEDAFDAIKTMMVRGAPLIAIVAALGLAVEACSGATQNGTAQEASSMLHEKLDYLKTSRETAVNLANACDALKTTISGEAAREGSTWSSTVEAFVGAAEAMLEEDVAANRRQGGYAVEALQLEPSCKGKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLASCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQG 242
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A1S3TXD9_VIGRR (Methylthioribose-1-phosphate isomerase n=13 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=A0A1S3TXD9_VIGRR)

HSP 1 Score: 228 bits (581), Expect = 4.950e-70
Identity = 133/236 (56.36%), Postives = 167/236 (70.76%), Query Frame = 1 
Query:   25 RYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACS-DTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            RY RGSL +L+Q KLP ET Y+++R + D ++AI+ M+VRGAP IAI AAL LAVE  + D  NG+A EA S+L  KL++L +SR TAVNL++A   LK  +S  AA   S   S  +AF+ AAE MLE+DVA+NR  G Y    +  +     K +LSVLTHCNTGSLATAG+GTALGVIRAL   G+L   YCTETRP+NQG+RLTAYE V + +P TLI DSAA+ LM  G+V
Sbjct:   16 RYNRGSLHLLDQRKLPLETTYLEIRDSTDGWNAIQDMVVRGAPAIAIAAALSLAVEVFNLDGFNGSAGEAVSILQNKLEYLVSSRPTAVNLSDAAGKLKEVVSNAAATT-SEGRSVFQAFIEAAEVMLEDDVASNRAIGSYGASCIQQQTG---KQKLSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMKAGSV 247
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A7S0B777_9DINO (Methylthioribose-1-phosphate isomerase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B777_9DINO)

HSP 1 Score: 228 bits (581), Expect = 5.090e-70
Identity = 135/247 (54.66%), Postives = 169/247 (68.42%), Query Frame = 1 
Query:    4 VPLRNVGRYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEA---CSDTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLS--EPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            +P+    RY RGSLQVL+QLK+PH+ EYVDV  A  A+  +++M VRGAPLIAIV+ALGLAVEA          TA E ++ L E++  L+TSR TAVNL NA + L   ++ E A+EGS+ G   EA+V AAE ML EDVAAN+  G +  EA+L+  E + +      VLT CNTGSLATAG+GTALGVIR+L  +G L   Y  ETRPYNQGARLTA+E V D LPGTL+ DS A+ LM +  V
Sbjct:    1 MPVLESLRYARGSLQVLDQLKVPHQKEYVDVPDADAAWAVVRSMQVRGAPLIAIVSALGLAVEAEQRRQAASEQTAGEGAAWLRERMTHLRTSRPTAVNLFNAMECLGAVVTEEEAKEGSSAGQVYEAYVAAAERMLSEDVAANKAIGDHGAEAILAAMEKAGRAGEGARVLTICNTGSLATAGWGTALGVIRSLHARGRLERAYALETRPYNQGARLTAFELVEDSLPGTLVCDSMAAALMLRRGV 247
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: MTNA_VITVI (Methylthioribose-1-phosphate isomerase n=3 Tax=Vitis TaxID=3603 RepID=MTNA_VITVI)

HSP 1 Score: 228 bits (581), Expect = 5.540e-70
Identity = 134/235 (57.02%), Postives = 165/235 (70.21%), Query Frame = 1 
Query:   28 YTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACS-DTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            Y RGSLQ+L+Q KLP ET Y++++GA D + AI+ M+VRGAP IAI AAL LAVE  + +   GT+ +A+S L+ KLD+L TSR TAVNL++A   LK  IS  AA       S  +AF+ AAE ML EDVAANR  G Y    L S    KD   LS+LTHCNTGSLATAG+GTALGVIR++  +G+L   YCTETRP+NQG+RLTA+E V D +P TLI DSAA+ LM  G V
Sbjct:   17 YKRGSLQLLDQRKLPLETVYLEIKGADDGWHAIRDMVVRGAPAIAIAAALSLAVEVSNLEDFIGTSDDAASFLNSKLDYLVTSRPTAVNLSDAVTKLKGVISNAAATAFEAM-SVFQAFLEAAEDMLREDVAANRAIGLYGASFLQSH--IKDSKNLSILTHCNTGSLATAGYGTALGVIRSVHAEGILLRAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMQAGRV 248
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A164TKM6_DAUCS (Methylthioribose-1-phosphate isomerase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164TKM6_DAUCS)

HSP 1 Score: 228 bits (580), Expect = 6.990e-70
Identity = 129/236 (54.66%), Postives = 169/236 (71.61%), Query Frame = 1 
Query:   25 RYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACS-DTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            RY RG LQ+L+Q +LP ET Y+D+ GA D ++AI+ M+VRGAP IAI AAL LAVE  + D+ NG+A +A+S L  KLD+L +SR TAVNL++A   LK  +  +AA   S   +  +A++ A+E MLE+DVA+N+  G Y    ++     KD  ++SVLTHCNTGSLATAG+GTALGVIR+L   GLL + YCTETRP+NQG+RLTA+E V D +P TLI DSAA+ LM  G V
Sbjct:   13 RYKRGRLQLLDQRRLPLETLYLDIHGATDGWEAIRDMVVRGAPAIAIAAALSLAVEVSALDSFNGSAADAASFLSNKLDYLVSSRPTAVNLSDAATKLKEIVM-KAASSASEAKAVFQAYIEASEVMLEDDVASNKAIGSYGASFIVQH--LKDSKKVSVLTHCNTGSLATAGYGTALGVIRSLHADGLLESAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMKAGRV 245
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BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A200QCY2_9MAGN (Methylthioribose-1-phosphate isomerase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QCY2_9MAGN)

HSP 1 Score: 227 bits (578), Expect = 1.850e-69
Identity = 132/230 (57.39%), Postives = 168/230 (73.04%), Query Frame = 1 
Query:   28 YTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACSDTP-NGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLM 714
            Y RGSL++L+Q +LP ET Y+DV+GA D ++AI+ M+VRGAP IAI AAL LAVE  +  P +GT  +A S L EKLD+L +SR TAVNL++A   LK  IS +AA   +   S V+ ++ AAE MLE+DVA+N+  G Y    L ++   KD  RLS+LTHCNTGSLATAG+GTALGVIRAL  +G+L   +CTETRPYNQG+RLTA+E V D +P TLI DSAA+ LM
Sbjct:   22 YKRGSLRLLDQRRLPLETIYLDVQGANDGWNAIRDMVVRGAPAIAIAAALSLAVEVFNLQPFDGTCVDAVSFLTEKLDYLVSSRPTAVNLSDAAIKLKDIIS-KAAVTATEASSVVQEYIVAAETMLEDDVASNKAIGSYGASFLRAQ--LKDSKRLSILTHCNTGSLATAGYGTALGVIRALHTEGVLERAFCTETRPYNQGSRLTAFELVHDKIPATLIADSAAAALM 248
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A803MF53_CHEQI (Methylthioribose-1-phosphate isomerase n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MF53_CHEQI)

HSP 1 Score: 226 bits (576), Expect = 3.040e-69
Identity = 130/235 (55.32%), Postives = 167/235 (71.06%), Query Frame = 1 
Query:   28 YTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACS-DTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            Y RGSLQ+L+Q KLP ET Y+D++ A D + AIK M+VRGAP IAI AAL LAVEA + +T  GTA  A+S L +KL++L +SR TAVNL++A   LK  I+ +AA   S   +  +A++ AAE MLE+DVA+N+  G Y       E    D  ++S+LTHCNTGSLATAG+GTALGVIRA+  +G+L   YCTETRP+NQG+RLTA+E V D +P TLI DSAA+ LM  G V
Sbjct:   18 YKRGSLQLLDQRKLPLETVYLDIKNASDGWFAIKEMVVRGAPAIAIAAALSLAVEAVNLETFQGTADAAASFLAQKLEYLVSSRPTAVNLSDAATKLKE-ITVKAASTRSEANAVFQAYIEAAEIMLEDDVASNKAIGSYGASCF--ESQLNDAKKISILTHCNTGSLATAGYGTALGVIRAVHAQGILEKAYCTETRPFNQGSRLTAFELVHDNIPATLIADSAAAALMKAGCV 249
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A7C8ZRD7_OPUST (Methylthioribose-1-phosphate isomerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZRD7_OPUST)

HSP 1 Score: 226 bits (576), Expect = 3.040e-69
Identity = 130/235 (55.32%), Postives = 170/235 (72.34%), Query Frame = 1 
Query:   28 YTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACS-DTPNGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            Y RGSL++L+Q KLP ET Y+D++ A D + AI+ M+VRGAP IAI AAL LAVEA + +  NGT  +A+S L +KL++L +SR TAVNL++A   LK  I+ +AA   S   +  +A++ AAE MLEEDVA+N+  G +      S+   KD  ++S+LTHCNTGSLATAG+GTALGVIR+L E+GLL   YCTETRP+NQG+RLTA+E V D +P TLI DSAA+ LM  G V
Sbjct:   18 YKRGSLRLLDQRKLPLETVYLDIQNASDGWFAIRVMVVRGAPAIAIAAALALAVEAFNLEAFNGTPSDAASFLVQKLEYLVSSRPTAVNLSDAAAKLKEVIA-KAASTSSEAKAVFQAYIEAAEIMLEEDVASNKAIGSHGASCFQSQ--LKDDKKMSILTHCNTGSLATAGYGTALGVIRSLHEQGLLERAYCTETRPFNQGSRLTAFELVHDKIPATLIADSAAAALMQAGRV 249
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Match: A0A2G5C9V7_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5C9V7_AQUCA)

HSP 1 Score: 222 bits (566), Expect = 4.800e-69
Identity = 130/235 (55.32%), Postives = 169/235 (71.91%), Query Frame = 1 
Query:   28 YTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGAPLIAIVAALGLAVEACSDTP-NGTAQEASSMLHEKLDFLKTSRETAVNLANACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAVEALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANCYCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV 729
            Y RGSL++L+Q KLP E+ Y+DVR + D ++ I+ M+VRGAP IAI AAL LAVEA +  P NGT++EA+S L  KLD+L +SR TAVNL++A   LK  IS +AA  G    S  +A++ AAE ML++DVA+N+  G Y    +  + + KD   +S+LTHCNTGSLATAG+GTALGVIRAL   G+L   +CTETRP+NQG+RLTA+E V D +P TLI DSAA+ LM  G V
Sbjct:   25 YKRGSLKLLDQTKLPLESTYLDVRNSVDGWNTIRDMVVRGAPAIAIAAALSLAVEAFNMQPYNGTSEEAASFLVNKLDYLVSSRPTAVNLSDAAIKLKDIIS-KAAASGDAK-SVFQAYIEAAETMLKDDVASNKAIGSYGASFI--KDTLKDLKSVSILTHCNTGSLATAGYGTALGVIRALHTDGMLERAFCTETRPFNQGSRLTAFELVHDKIPATLIADSAAAALMKTGRV 255
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1624.4247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE3_ECTSI5.650e-14194.49Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A6H5JD08_9PHAE6.980e-13994.54Reverse transcriptase domain-containing protein n=... [more]
A0A1S3TXD9_VIGRR4.950e-7056.36Methylthioribose-1-phosphate isomerase n=13 Tax=in... [more]
A0A7S0B777_9DINO5.090e-7054.66Methylthioribose-1-phosphate isomerase n=1 Tax=Pyr... [more]
MTNA_VITVI5.540e-7057.02Methylthioribose-1-phosphate isomerase n=3 Tax=Vit... [more]
A0A164TKM6_DAUCS6.990e-7054.66Methylthioribose-1-phosphate isomerase n=1 Tax=Dau... [more]
A0A200QCY2_9MAGN1.850e-6957.39Methylthioribose-1-phosphate isomerase n=1 Tax=Mac... [more]
A0A803MF53_CHEQI3.040e-6955.32Methylthioribose-1-phosphate isomerase n=4 Tax=Che... [more]
A0A7C8ZRD7_OPUST3.040e-6955.32Methylthioribose-1-phosphate isomerase n=1 Tax=Opu... [more]
A0A2G5C9V7_AQUCA4.800e-6955.32Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1624contigE-fasciculatus_F_contig1624:445..4484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.9
Seed ortholog evalue3.1e-117
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
EC2.7.1.100,5.3.1.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size729
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1624.4247.1prot_E-fasciculatus_F_contig1624.4247.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1624 445..4484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.616959-CDS-E-fasciculatus_F_contig1624:444..5431622928092.616959-CDS-E-fasciculatus_F_contig1624:444..543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 445..543 -
1695995817.9818933-CDS-E-fasciculatus_F_contig1624:444..5431695995817.9818933-CDS-E-fasciculatus_F_contig1624:444..543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 445..543 -
1622928092.629909-CDS-E-fasciculatus_F_contig1624:907..10171622928092.629909-CDS-E-fasciculatus_F_contig1624:907..1017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 908..1017 -
1695995817.993475-CDS-E-fasciculatus_F_contig1624:907..10171695995817.993475-CDS-E-fasciculatus_F_contig1624:907..1017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 908..1017 -
1622928092.6405528-CDS-E-fasciculatus_F_contig1624:1677..17611622928092.6405528-CDS-E-fasciculatus_F_contig1624:1677..1761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 1678..1761 -
1695995818.00309-CDS-E-fasciculatus_F_contig1624:1677..17611695995818.00309-CDS-E-fasciculatus_F_contig1624:1677..1761Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 1678..1761 -
1622928092.6510994-CDS-E-fasciculatus_F_contig1624:2473..26581622928092.6510994-CDS-E-fasciculatus_F_contig1624:2473..2658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 2474..2658 -
1695995818.018076-CDS-E-fasciculatus_F_contig1624:2473..26581695995818.018076-CDS-E-fasciculatus_F_contig1624:2473..2658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 2474..2658 -
1622928092.6653633-CDS-E-fasciculatus_F_contig1624:3414..35271622928092.6653633-CDS-E-fasciculatus_F_contig1624:3414..3527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 3415..3527 -
1695995818.0367057-CDS-E-fasciculatus_F_contig1624:3414..35271695995818.0367057-CDS-E-fasciculatus_F_contig1624:3414..3527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 3415..3527 -
1622928092.7586343-CDS-E-fasciculatus_F_contig1624:4346..44841622928092.7586343-CDS-E-fasciculatus_F_contig1624:4346..4484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 4347..4484 -
1695995818.0504265-CDS-E-fasciculatus_F_contig1624:4346..44841695995818.0504265-CDS-E-fasciculatus_F_contig1624:4346..4484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1624 4347..4484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1624.4247.1

>prot_E-fasciculatus_F_contig1624.4247.1 ID=prot_E-fasciculatus_F_contig1624.4247.1|Name=mRNA_E-fasciculatus_F_contig1624.4247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=243bp
MVPLRNVGRYTRGSLQVLNQLKLPHETEYVDVRGAGDAFDAIKTMMVRGA
PLIAIVAALGLAVEACSDTPNGTAQEASSMLHEKLDFLKTSRETAVNLAN
ACDALKTTISGEAAREGSTWGSTVEAFVGAAEGMLEEDVAANRRQGGYAV
EALLSEPSCKDKARLSVLTHCNTGSLATAGFGTALGVIRALDEKGLLANC
YCTETRPYNQGARLTAYEFVADGLPGTLIPDSAASFLMAQGAV
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mRNA from alignment at E-fasciculatus_F_contig1624:445..4484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1624.4247.1 ID=mRNA_E-fasciculatus_F_contig1624.4247.1|Name=mRNA_E-fasciculatus_F_contig1624.4247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1624:445..4484- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCCTCTTCGGAACGTCGGCAGGTACACGAGGGGGTCGCTGCAGGT
TCTGAACCAGCTGAAACTGCCTCATGAAACCGAGTACGTGGACGTGCGAG
GGGCCGGGGATGCCTTCGACGCCATCAAGACCATGATGGTAGGTGAACCT
AAAGCGTGTCGAAGGAAAAATATATGCCCGGGGTTTAACAGGAGCGTGCT
ATTGACTGCTGCACCTGTTGACTAAAACACCTACATGACCATCGCGTATG
TGCGACAAGCCTTCGGAGAGTGGCATAGCAAGGGGTGGAAGATGACGCGA
CCAAAGTATTTTCATTGGTCAGCGGGTTACAATCCGCGCGGCCGATTCCA
GTGAACGAAGCTCAAGGCACCTTTTTCGGCATGCTTTTTCGTCCTTGGGA
GGCCTTCATTCCGTAAGCGATGACGTAGGTTAGAAATTTTGCTCCGCCGG
AGAGGACCCTTTCTCTCTTACTGATGTGTGGCGAGGAATTGCCAAGCGTG
GGCGAGGTAATCCGACGTGCTCGATACGAGAACGGGTGAGAGTGAGGGTT
TTTCGTTGTCCAAAACTCACAAGCGAGATGGAAGTGAGGGCCGAGGTCCC
CAGCGCCAGTAGAGGACGTACGTAATCGGGCGGGATGTCAAGGTTGCATG
AAGCGGGTGGTTTTGTTTCCTGAGAGATCGGGTTAACTCGGACGGGGAAA
GGCTCCAGGATTGGGGACGGTGGGTCCGAGCGAAGGAATTAGCTGAGGGG
CTCGAGAGAGATGCGCCAGCAAGCTCTTTTGTTTTAGCTTGCCTTCATTC
TCGTTTGCAAATCAGTGGTGACTTCCGTTCTGAAGCTCGAGTGAGCTGAC
GCGCGTATGGGAGCGTGGTCGTGCATCTCGTGCATCCTTGCGTTCCCCCA
ACGCCTGTTCTTGTCATGTCGGACGAACGCTGTTGGTTTGCCTGCTGTTG
TCGGCAGGTGAGAGGCGCACCTCTTATCGCCATCGTCGCAGCCCTCGGCC
TCGCCGTGGAGGCGTGCTCGGATACGCCGAACGGCACGGCGCAAGAGGCA
TCGTCCATGCTGCACGAGAAGTGAGCTTCGTTGCACCTTGGGGAGGTTGC
GACGGTTTCATGATCACGATGGTCGGTCGTAGAGCCGACTGCGCATGTGA
ACCGTCTCCGTCGCTATGCGCCCGGAGTTGCCTGCAGAAGGTCGCCGTAT
GTACTTTGACAGTGTGGCGGGTTCATGATCACGAATATTGGTCGTACCAG
CCTACTCGTCGTTGTTGGCTGCAGAACATCGCCGTAGTTCGATAGTGCGA
ACCACGAGCTGCATCGCTGCCGTGGATCTATCGTCGCAGTCCTTGCAGCA
GTGACGTGTTTCTACCGCACGTTACTTCTCGTTCGACCGTGACCCAGTGA
CAGCTTTGCCGCCTTAGTTCGAGGATTTGTTCCAACGATGTGCTTGGTAG
GCATCGGATCGTTCTTGAGAATGGTGCCCATGTATTCCCGACACAGTAGT
ACGTTCGTGTAGATGGTAGATGGCTCGTGAACGTCGAAAATGCCGCGGGC
TAGGAGCCGATACCCATAACGTGCTGTTCGACTCTTCAGCGTACGTACCA
CCCTATCGGGAACCAGCCCTCCCGCCGACCCACAACACCCGTTCGCGCGT
AAGTTCCTGAAGACACCGAGCCTCGAAGCACGGTACTGCCAATGACCAAC
CATCCACCCCAACAGTAACAACCTTGTGTCCCAACCGTAGCAGCCCTACC
TGTAGCGTTCATTCCCGCCCTCATTCCCCGTGGACGTGCAAAAAATACGC
ATGCAATCAAAAACCCGAACATCAAGGCTGGATTTCCTGAAGACCTCGCG
GGAGACGGCGGTGAACCTTGCCAACGCCTGCGATGCCCTCAAGACCACGA
TCTCCGGAGAAGCCGCGAGGGAGGGCAGCACGTGGGGTTCCACGGTGGAG
GCTTTCGTCGGGGCCGCCGAGGGCATGCTGGAAGAGGACGTCGCCGCGAA
CCGTCGGCAAGGTAATGAACTCTGTGGTAGCCCGCTCAATGATGTCGATG
TTAGACAGATTAGATTTTCACGCCACCTGTTCGTGAGGCAACTGTTCATG
GCGTAGACGTGACCCGTGCCCAACGAAGGGCCTTCTTCGTGTTGCGAATA
TTGGAACATTGATGGTGGTGTAGGAGCAGCCGCCGAAGAGACTCCGCTTC
AATCGAGACTTGCGTGTGATTGTATTAGGCTCATCAAGACGTATGTAAGC
AACCTACTATGTGCCAGCTCGCCGTTGGCTGAGATGGTGTATTTCGACGT
ATGTGCTTGTTTTTGTTTGCGCAATGTCGGCAGCGGTATTTCGTACGCTG
CCCTAAATGAAAGTAGCATCCTTGCCGGCCATACTTAGTTGATGAGAATC
TGCTCTCGACCTATCAACCGAACCAATTTGCTCGGAGTTCGGGACGCTCT
CTGATGCCCCCCGGTGTGATCGTTTGATCTCTTAAGCTCGACACAAGCCG
AATGTAGAACAGGCCTTTCGATCCCCCATGCACTTTCGCCGTCATTTTTA
TCCCACGGTTTCCCACTGGTGTTCCATCCCCTGGCTGATTTTCACAAGCC
CCCATGACCATACCGTCGCTGTCGGTCTCATGTCCCCAATGGCCGTCTCC
CTGTGCGCGCTTTCCAATTTCCAACATCCTACATGCCTGATGTGGTGGCC
TATCCTATGACGGTGGTTAACAGGGGGGTACGCCGTGGAGGCCCTTCTGT
CGGAGCCGTCGTGCAAGGACAAAGCCCGCCTCTCGGTCCTTACGCACTGC
AACACCGGTAAGAGGGAGGGTGTTATCTACCGTACTTGAGACAATGATGA
GACACGCCACATACTACCACACTCGGTGGTAATGTCTTTGCGGATTCACA
TGGGCCCAACCCGCAAGACTACTCTAGGTCAAGTATGCGGGCCACGTAAG
GTACCACACCCCTAAGAAACAACCCACCCCGGTAGTGTAATGACTGGCGC
ATTGTGCTGTTACTGTGGTTCATGTTGTCGTCACTGCTGTTGTTTCAGCT
GCTGTCAAGTCAGGCACCTTATGTACGAGGTTGAAGAGTCTGGGCACGCG
GGTGCCGCATATTATGACGGGGAGTTATGTTGCTCGCCTAGTGTCTGTTG
TTCGCGTTGGAACCGTCCTTTCTCTCTATCAACGCAATATATCACCCTGG
AACATTATAACAGGATACTGATCACTTATCCGCGACCAAGCTCGGTGGAT
TGCTTCGTGAAACCCATGCGATGCAAATCATCGTGAACAACGGTCTCCCT
TCGGAGGCAATACAATAGTCAGTGGAAGGTTCTGAAGCCCGTTCTGTATG
AATTGCATATCATACAAAATGCTCACCCATCCGAGACAATACTCAGTGGG
ATATTCTACAACTACAAGCAGTAGTGCTGCCAATTTCCAACATTTCTCTC
AACGTGCCTTCCCCAAGGATCCCTGGCGACCGCTGGGTTCGGGACGGCAT
TGGGCGTGATTCGAGCCCTCGACGAAAAGGGTTTGCTGGCGAACTGCTAT
TGTACGGAGACGAGGCCTTACAACCAGGTACGATACGGTACACGGCTGCC
GTTGCGTTCCACGGTTTTCGCTTTTGCACCCACGGGATCCACCCGACCTG
TGGACGCATCCTACAACACGGGGTTTTTATAGCTGCCGTTCGGGGTGTTG
ACACCTGACGGAATTTCTTCTTGTTTGTGTTGACCATACGGAGCGGCTGG
TTATAAGTCACGTATTGTCGGAGCGGTGGTGTTTGTTTGTGTCGTATTGT
TTGCATAGCGTATATATATATAGTTTCCCCGTTGTTTCGTCTCCCTTTTA
CTACAAACACTTGCCCCAAAAAATCCTGACGTAACCCTTCTTCTTTCTTT
CCCCCTCGTTGGTTCGTGCGGTGTTATGCTCGCGCGCACAGGGCGCTCGC
CTGACGGCGTACGAGTTTGTCGCCGATGGGCTGCCCGGCACGCTTATCCC
TGATTCCGCCGCTTCTTTCCTCATGGCTCAAGGTGCGGTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1624:445..4484-

>mRNA_E-fasciculatus_F_contig1624.4247.1 ID=mRNA_E-fasciculatus_F_contig1624.4247.1|Name=mRNA_E-fasciculatus_F_contig1624.4247.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1624:445..4484- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCCTCTTCGGAACGTCGGCAGGTACACGAGGGGGTCGCTGCAGGT
TCTGAACCAGCTGAAACTGCCTCATGAAACCGAGTACGTGGACGTGCGAG
GGGCCGGGGATGCCTTCGACGCCATCAAGACCATGATGATGGTTCCTCTT
CGGAACGTCGGCAGGTACACGAGGGGGTCGCTGCAGGTTCTGAACCAGCT
GAAACTGCCTCATGAAACCGAGTACGTGGACGTGCGAGGGGCCGGGGATG
CCTTCGACGCCATCAAGACCATGATGGTGAGAGGCGCACCTCTTATCGCC
ATCGTCGCAGCCCTCGGCCTCGCCGTGGAGGCGTGCTCGGATACGCCGAA
CGGCACGGCGCAAGAGGCATCGTCCATGCTGCACGAGAAGTGAGAGGCGC
ACCTCTTATCGCCATCGTCGCAGCCCTCGGCCTCGCCGTGGAGGCGTGCT
CGGATACGCCGAACGGCACGGCGCAAGAGGCATCGTCCATGCTGCACGAG
AAGCTGGATTTCCTGAAGACCTCGCGGGAGACGGCGGTGAACCTTGCCAA
CGCCTGCGATGCCCTCAAGACCACGATCTCCGGAGAAGCCGCGAGGGAGG
GCAGCACGTGGGGTTCCACGGTGGAGGCTTTCGTCGGGGCCGCCGAGGGC
ATGCTGGAAGAGGACGTCGCCGCGAACCGTCGGCAAGGCTGGATTTCCTG
AAGACCTCGCGGGAGACGGCGGTGAACCTTGCCAACGCCTGCGATGCCCT
CAAGACCACGATCTCCGGAGAAGCCGCGAGGGAGGGCAGCACGTGGGGTT
CCACGGTGGAGGCTTTCGTCGGGGCCGCCGAGGGCATGCTGGAAGAGGAC
GTCGCCGCGAACCGTCGGCAAGGGGGGTACGCCGTGGAGGCCCTTCTGTC
GGAGCCGTCGTGCAAGGACAAAGCCCGCCTCTCGGTCCTTACGCACTGCA
ACACCGGGGGGTACGCCGTGGAGGCCCTTCTGTCGGAGCCGTCGTGCAAG
GACAAAGCCCGCCTCTCGGTCCTTACGCACTGCAACACCGGATCCCTGGC
GACCGCTGGGTTCGGGACGGCATTGGGCGTGATTCGAGCCCTCGACGAAA
AGGGTTTGCTGGCGAACTGCTATTGTACGGAGACGAGGCCTTACAACCAG
GATCCCTGGCGACCGCTGGGTTCGGGACGGCATTGGGCGTGATTCGAGCC
CTCGACGAAAAGGGTTTGCTGGCGAACTGCTATTGTACGGAGACGAGGCC
TTACAACCAGGGCGCTCGCCTGACGGCGTACGAGTTTGTCGCCGATGGGC
TGCCCGGCACGCTTATCCCTGATTCCGCCGCTTCTTTCCTCATGGCTCAA
GGTGCGGTCGGCGCTCGCCTGACGGCGTACGAGTTTGTCGCCGATGGGCT
GCCCGGCACGCTTATCCCTGATTCCGCCGCTTCTTTCCTCATGGCTCAAG
GTGCGGTC
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