mRNA_E-fasciculatus_F_contig16165.4206.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16165.4206.1
Unique NamemRNA_E-fasciculatus_F_contig16165.4206.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16165.4206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16165contigE-fasciculatus_F_contig16165:611..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.1867232-CDS-E-fasciculatus_F_contig16165:610..9521622928081.1867232-CDS-E-fasciculatus_F_contig16165:610..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16165 611..952 +
1695995815.8737216-CDS-E-fasciculatus_F_contig16165:610..9521695995815.8737216-CDS-E-fasciculatus_F_contig16165:610..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16165 611..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16165.4206.1prot_E-fasciculatus_F_contig16165.4206.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16165 611..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16165.4206.1

>prot_E-fasciculatus_F_contig16165.4206.1 ID=prot_E-fasciculatus_F_contig16165.4206.1|Name=mRNA_E-fasciculatus_F_contig16165.4206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
AHCRVQQCTAWCSTGRRVKSRRMYLYNCTYIGGATALVKSKACQLPHHEW
RKSSPLNHVGKANGRVNTSHHMYSVSIDTRRYGRETDFRVTNQTSTRRSL
HDKGSRRSTPTYSI
back to top

mRNA from alignment at E-fasciculatus_F_contig16165:611..953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16165.4206.1 ID=mRNA_E-fasciculatus_F_contig16165.4206.1|Name=mRNA_E-fasciculatus_F_contig16165.4206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=343bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16165:611..953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCATTGTCGTGTACAGCAGTGTACAGCGTGGTGCTCGACGGGTCGACG
GGTAAAATCTCGTCGAATGTACCTATACAATTGTACCTACATCGGAGGTG
CAACCGCATTAGTTAAATCAAAGGCTTGCCAGTTGCCACATCATGAGTGG
AGAAAAAGCAGCCCACTTAACCACGTTGGCAAAGCGAACGGGCGTGTCAA
CACATCACATCACATGTATAGTGTCAGCATAGACACACGCCGATATGGCA
GAGAAACTGACTTCAGGGTTACCAACCAGACCAGCACAAGAAGATCCCTC
CACGATAAAGGATCGAGGCGATCAACACCGACGTATTCAATCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16165:611..953+

>mRNA_E-fasciculatus_F_contig16165.4206.1 ID=mRNA_E-fasciculatus_F_contig16165.4206.1|Name=mRNA_E-fasciculatus_F_contig16165.4206.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16165:611..953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCCATTGTCGTGTACAGCAGTGTACAGCGTGGTGCTCGACGGGTCGACG
GGTAAAATCTCGTCGAATGTACCTATACAATTGTACCTACATCGGAGGTG
CAACCGCATTAGTTAAATCAAAGGCTTGCCAGTTGCCACATCATGAGTGG
AGAAAAAGCAGCCCACTTAACCACGTTGGCAAAGCGAACGGGCGTGTCAA
CACATCACATCACATGTATAGTGTCAGCATAGACACACGCCGATATGGCA
GAGAAACTGACTTCAGGGTTACCAACCAGACCAGCACAAGAAGATCCCTC
CACGATAAAGGATCGAGGCGATCAACACCGACGTATTCAATCGCCCATTG
TCGTGTACAGCAGTGTACAGCGTGGTGCTCGACGGGTCGACGGGTAAAAT
CTCGTCGAATGTACCTATACAATTGTACCTACATCGGAGGTGCAACCGCA
TTAGTTAAATCAAAGGCTTGCCAGTTGCCACATCATGAGTGGAGAAAAAG
CAGCCCACTTAACCACGTTGGCAAAGCGAACGGGCGTGTCAACACATCAC
ATCACATGTATAGTGTCAGCATAGACACACGCCGATATGGCAGAGAAACT
GACTTCAGGGTTACCAACCAGACCAGCACAAGAAGATCCCTCCACGATAA
AGGATCGAGGCGATCAACACCGACGTATTCAATC
back to top