mRNA_E-fasciculatus_F_contig1613.4190.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1613.4190.1
Unique NamemRNA_E-fasciculatus_F_contig1613.4190.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.920e-83
Identity = 144/218 (66.06%), Postives = 161/218 (73.85%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAPEDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            VE CDG I GIQ SD+ CSSSCGSCGG+GCT RDGG+EACCGGGVRASGR CSVTGEAPC+ +GP P P          T EV MCDG I GIQ SD+CCSSSCGSCGG GCT RDGG+EACCGGGVRASGR CSVTGEAPC+ +            E   CDGGIVGIQ +DVCC+LSCGSCGGTGC+ R+GGS +CC   ++A+G  C     APC
Sbjct:   61 VETCDGGIVGIQQSDISCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCM-TGPAPTPEXXXXXXXXXTDEVSMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN------------EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPC 265          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.690e-80
Identity = 148/228 (64.91%), Postives = 168/228 (73.68%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAP--------APTPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAP----------EDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            V MCDGDI GIQ SDVCCS+SCGSCGGSGCT RDGG+E+CCGGGVRASGR CS+TGEAPC+ +GP P P          T EV MCDGDI GIQ SDVCCS+SCG+CGG GCTGRDGG+E+CCGGGVRASGR CS+TGEAPC+         PTPA           E   CDGGIVGIQ +DVCC+LSCGSCGG+GC+ R+GGS SCC   ++A+G  C     APC
Sbjct:  142 VPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCM-TGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGA-----APTPAXXXXXXXXXTVEVPKCDGGIVGIQASDVCCSLSCGSCGGSGCTGRDGGSESCCGGGVRASGRDCSVTGEAPC 363          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 3.160e-80
Identity = 144/218 (66.06%), Postives = 161/218 (73.85%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAPEDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            V MCDG I GIQ SD+CCSSSCGSCGG+GCT RDGG+EACCGGGVRASGR CSVTGEAPC+ +GP P P          T EV MCDG I GIQ SD+CCSS CGSCGG GCT RDGG+EACCGGGVRASGR CSVTGEAPC+ +            E   CDGGIVGIQ +DVCC+LSCGSCGGTGC+ R+GGS +CC   ++A+G  C     APC
Sbjct:   22 VPMCDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTGEAPCM-TGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN------------EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPC 226          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 3.390e-77
Identity = 146/226 (64.60%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAP--------EDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            + MCDG I GIQ SDVCCS+SCGSCGGSGCTGRDGG+E+CCGGGVRASGR CS+TGEAPC+ +GP P P          T EV MCDG I GIQ SDVCCS+SCGSCGG GCTGRDGG+E+CCGGGVRASGR CS+TGEAPC+     P PTP            E   CDGGIVGIQ++DVCC+ SCGSCGG+GCS R+GGS SCC   ++ +G  C     APC
Sbjct:  155 IPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM-TGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTG---PAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRGSGRYCSVTGEAPC 376          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.140e-76
Identity = 140/213 (65.73%), Postives = 156/213 (73.24%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAPTPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APE-PTPTPAPEDE--TCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            V MCDG I GIQ SDVCCS+SCGSCGG+GC+GRDGG+ ACCGGGVRASGR CSVTGEAPC+             V  CDG I GIQ SDVCCS SC SCGG GC+GRDGG + CCGGGVRASGR+CSVTGEAPC+V+   P  P PTPAP     TCDGGIVG+Q +DVCCALSCGSCGG GCS R+GG  +CC  +I+     C     APC
Sbjct:  267 VPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMT------------VPKCDGGIVGIQASDVCCSLSCESCGGSGCSGRDGGEDECCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAAGTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDGGEDNCCGVEIRTANLDCSVTGEAPC 467          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 1.740e-76
Identity = 147/228 (64.47%), Postives = 165/228 (72.37%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAPTPE----------VEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTP--------APEDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            V  CDG I GIQ SDVCCS SCGSCGG+GCTGRDGGA+ACCGGGVR+SGR CSVTGEAPC+ +GP P P PT            V MCDG I GIQ SDVCC+SSCGSCGG GCTGRDGG +ACCGGGVRASGR CSVTGEAPC+     P PTP            E   CDGGIVGIQ++DVCC+LSCGSCGGTGC+ R+GG+ +CC   ++A+G  C     APC
Sbjct:   50 VPTCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPCI-TGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCMTG---PAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGADACCGGGVRASGRDCSVTGEAPC 273          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 2.440e-76
Identity = 141/226 (62.39%), Postives = 161/226 (71.24%), Query Frame = 2
Query:    2 VEMCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAP--------EDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPC 631
            V MCDG I GIQ  +VCCS+SCGSCGG GC+GRDGG++ACCGGGV ASGR C+VTGEAPC+ +GP P P          T E  MCDG I GIQ SDVCCS+SCGSC G GC+GRDGG +ACCGGGVRASGR CSVTGEAPC+     P PTP            E   CDGGIVGIQ +DVCC+LSCGSCGG+GCS R+GGS +CC   ++A+G  C     APC
Sbjct:  313 VPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCI-TGPAPTPEXXXXXXXXXTVEAPMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDACCGGGVRASGRFCSVTGEAPCITG---PAPTPXXXXXXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPC 534          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.500e-74
Identity = 139/224 (62.05%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    8 MCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAP------EDETCDGGIVGIQTADVCCALSCGSCGGTGCSQREGGSTSCCYDDIQANGDSCGSVDSAPCRL 637
            MC+G I GIQ SDVCCS SCGSCGGSGC+GRDGG++ACCGGGVRASGR CS+T EAPC+ +GP P P          T EV MCDG+I GIQ SDVCCS+SCGSCGG GC+GRDGG++ACCGGGVRASGR CSVTGEAPC+  G AP   PT         E   CDGGIVGIQ +DVCC+ SCGS     C+ R+GG  +CC   ++A+G  C     APC L
Sbjct:  179 MCEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCM-TGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMT-GPAPTTEPTXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXCTGRDGGPDACCGGGVRASGLLCSVTGEAPCLL 400          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5JVK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.160e-37
Identity = 79/115 (68.70%), Postives = 86/115 (74.78%), Query Frame = 2
Query:    8 MCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAP--------TPEVEMCDGDIPGIQVSDVCCSSSCGSCGGFGCTGRDG 328
            MCDG I GIQ SDVCCS+SCGSCGGSGC+GRDGG++ACCGGGVRASGR CSVTGEAPC+ +GP P P          T EV MCDG I GIQ SDVCCS+SCGS       GRDG
Sbjct:    1 MCDGGIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCM-TGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQASDVCCSASCGSXXXXXXXGRDG 114          
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.300e-35
Identity = 96/226 (42.48%), Postives = 124/226 (54.87%), Query Frame = 2
Query:   11 CDGDIPGIQVSDV-CCSSSCGSCGGSGCT------GRDGGAEACCGGGVRASGRDCSVTGEAPCVVSGPTPAPAPTPEVEMCDGDIPGIQVSDV-CCSSSCGSCGGFGCT------GRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*APEPTPTPAPEDETCDGGIVGIQ-TADVCCALSCGSCGGTGCSQREG----GSTSCCYDDIQANGDSCGSVDSAPC 631
            C   + GI  + V CC  +CG CGG+GC       G DG   +CCGGGV+AS   C  T EAPC++ G  P P+PT     C   + GI  + V CC   CG CGG GC       G DG   +CCGG ++ASG+ C  T +APC++ G +P P+PTP+   ETC  G+ GI     VCC L CG CGG GC+        G+ SCC   I+A+ + C   + APC
Sbjct:  193 CSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDG--SSCCGGGVKASDEYCDETNEAPCII-GSRPTPSPT-SANTCSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDG--SSCCGGSIKASGKYCDETNDAPCII-GSSPAPSPTPS---ETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPC 408          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1613.4190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D5_ECTSI3.920e-8366.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTV1_9PHAE1.690e-8064.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3T6_ECTSI3.160e-8066.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4E0_ECTSI3.390e-7764.60N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7G3U7_ECTSI1.140e-7665.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE1.740e-7664.47AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JWJ0_9PHAE2.440e-7662.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Y1_9PHAE2.500e-7462.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVK3_9PHAE2.160e-3768.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE1.300e-3542.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1613contigE-fasciculatus_F_contig1613:9..4028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7FQV4
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2060
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.2290425-UTR-E-fasciculatus_F_contig1613:8..151622928079.2290425-UTR-E-fasciculatus_F_contig1613:8..15Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 9..15 +
1695995815.0701292-UTR-E-fasciculatus_F_contig1613:8..151695995815.0701292-UTR-E-fasciculatus_F_contig1613:8..15Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 9..15 +
1622928079.2873347-UTR-E-fasciculatus_F_contig1613:1851..18851622928079.2873347-UTR-E-fasciculatus_F_contig1613:1851..1885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 1852..1885 +
1695995815.1202724-UTR-E-fasciculatus_F_contig1613:1851..18851695995815.1202724-UTR-E-fasciculatus_F_contig1613:1851..1885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 1852..1885 +
1622928079.298556-UTR-E-fasciculatus_F_contig1613:2420..40281622928079.298556-UTR-E-fasciculatus_F_contig1613:2420..4028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 2421..4028 +
1695995815.1299865-UTR-E-fasciculatus_F_contig1613:2420..40281695995815.1299865-UTR-E-fasciculatus_F_contig1613:2420..4028Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1613 2421..4028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.2412977-CDS-E-fasciculatus_F_contig1613:15..1991622928079.2412977-CDS-E-fasciculatus_F_contig1613:15..199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 16..199 +
1695995815.0818486-CDS-E-fasciculatus_F_contig1613:15..1991695995815.0818486-CDS-E-fasciculatus_F_contig1613:15..199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 16..199 +
1622928079.251743-CDS-E-fasciculatus_F_contig1613:652..6851622928079.251743-CDS-E-fasciculatus_F_contig1613:652..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 653..685 +
1695995815.0915341-CDS-E-fasciculatus_F_contig1613:652..6851695995815.0915341-CDS-E-fasciculatus_F_contig1613:652..685Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 653..685 +
1622928079.2620544-CDS-E-fasciculatus_F_contig1613:1208..13971622928079.2620544-CDS-E-fasciculatus_F_contig1613:1208..1397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 1209..1397 +
1695995815.1007934-CDS-E-fasciculatus_F_contig1613:1208..13971695995815.1007934-CDS-E-fasciculatus_F_contig1613:1208..1397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 1209..1397 +
1622928079.2761588-CDS-E-fasciculatus_F_contig1613:1846..18511622928079.2761588-CDS-E-fasciculatus_F_contig1613:1846..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 1847..1851 +
1695995815.1103165-CDS-E-fasciculatus_F_contig1613:1846..18511695995815.1103165-CDS-E-fasciculatus_F_contig1613:1846..1851Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1613 1847..1851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1613.4190.1prot_E-fasciculatus_F_contig1613.4190.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1613 16..1851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1613.4190.1

>prot_E-fasciculatus_F_contig1613.4190.1 ID=prot_E-fasciculatus_F_contig1613.4190.1|Name=mRNA_E-fasciculatus_F_contig1613.4190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=137bp
MCDGDIPGIQVSDVCCSSSCGSCGGSGCTGRDGGAEACCGGGVRASGRDC
SVTGEAPCVVSGPTPAPAPTPEVEMCDGDIPGIQVSDVCCSSSCGSCGGF
GCTGRDGGAEACCGGGVRASGRECSVTGEAPCVVSG*
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mRNA from alignment at E-fasciculatus_F_contig1613:9..4028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1613.4190.1 ID=mRNA_E-fasciculatus_F_contig1613.4190.1|Name=mRNA_E-fasciculatus_F_contig1613.4190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1613:9..4028+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTTGAGATGTGCGACGGCGACATTCCCGGCATCCAAGTGAGCGATGTAT GCTGCTCCTCAAGCTGCGGGTCGTGCGGAGGTTCCGGGTGCACTGGCAGG GACGGTGGAGCCGAAGCCTGCTGTGGTGGCGGAGTTAGGGCATCCGGTCG CGACTGCTCTGTTACGGGAGAAGCACCCTGCGTTGTTTCCGGTGAGCTGA TCGGAGCGACCCTCGTCCGGGGGTCGCGATGCAGAACGCACATTTCATGG AAAATGTCATCGTTTCATTAGAATTTGCTCCTCCTAAAGCCAGGGAGCGT AACCGCTATGCATGTGCTCTCTTTCGTGCCTTCACTCGGTCTCGAGTTGT TTAGAGCGGTTGGAACGTGGTGTACCTACTCTGTAGGGTAAACCAGCAAG CTCATTTCCATGATTTTATACGGCCAGGCAAAGGCTGGATTTGAGCTTCC AAGTGAAAAGGTTAGCTGCAACTATCCTCCTTCAGGCACTCCGACCGAGA CCCCCACCTGAAGCAATAAGCACCTCTCTTTTTAGCTTCACGTGCGTTTC CCAGGCATGAACGTATTCATCCAAATGCCTTCTTGTCTTGCAACACTGCG TCAACACTACTCTGTGCGGACGCTTGCGCCATTTCGTGCAACAGGCCCGA CCCCTGCACCGGCTCCTACACCTGAAGGTCAGTGGTGGTCCTCCGTTGCC GCCTTGTCCCAAAAGCAACACTCACCATGGTTTTAGCATCAGATATCTCG GCGACCCGAATGGTGTCCACTGCACACCACGACGTCTTCATGATGGTTCC TCGAAACTGCACGTGGATCTACAGAAACTACCATCAGTACGATACGGATA TGATTACCCCGTCACAGCTCATCATCCATGTCGCTGGTATGATTTAGTAC ATAGGTAAGCGCACGTTGCGTTGCGCCTGCAGGGCAGACAGCTCCGCTTC GGGCTACCCAGTCTTCAGCATTCGTGTGAGTTTGATTTACTTGATTGCTG TGTCGCGTGTCTGAAAAATATGACTACATGTATGTTACGGCGCACGACAA CCCGTTGAGTGAAACGACTCAGGCTACTAAGCCAGGTTCTAGAGAGTGCG CGATCGACCCTTACCCATGTCTCTTGTCTCTGGTCACTTGAACTCACCAC AATTAAGACCGGCTGTGATTCGAATGACGCGCTTGATCCGAAACGAACAG TTGAGATGTGCGACGGCGACATTCCCGGCATCCAAGTGAGCGATGTATGC TGCTCCTCAAGCTGCGGGTCGTGCGGAGGTTTCGGGTGCACTGGCAGGGA CGGTGGAGCCGAAGCCTGCTGTGGTGGCGGAGTCAGGGCGTCCGGTCGCG AGTGCTCCGTTACGGGAGAAGCACCCTGCGTTGTTTCCGGTGAGCGATGC TCATTCGAGCGTCGCAATGAAGAACGCACACTTCGTGGCAGAGGTCATCG TTTCGTTAGAGTTTGCTCCTCCCAACCCAGAGCCGTAGATGATTCCATGC ATGTGCCCTTATGCCCCACTCGGTCTCGAAGAGGAACCCCTTGGCGGGTC CGACCTTCGACCCGCGTTTGTTTTTCCGGCGGGAAGATCAGCATGCCGCG TCTGGACAGCCGAACCATCAACCACACGCCCCCTTGACAACCACACGCCC CCTTGAGCCATTGCGTAATGAGCTATGCAGGGGCAATCCCCGCCCATCGG GTACAGTGGGAAACAACTACAGCAGTGGAGTGCTCATGGAAGTCGAACTC CGCCCCTCTACCATGACCGTTTGTCTGTCCTAATGGGAATTCTCGCGAAT ACTTTTACGTGCTGGCACTCAAACCATCTGCGCAACAGGCTAAGCCCCGG AACCTACGCCTACTCCTGCTCCTGAAGGTCAGTCGCGCTCGTGCTTCTTT CGGCTATTCACCGCGAGTATCGTGCAGCGATGACCAGACTTGAAAATACA CGGCCTCAAACATGGGGCGCTCAAACCGGATCATCCTTTTCTAAGACTAT GTCAACACAAAAATTATACGTACGGTAATTTACTAGGCGTGGCGGTTGTG GTTTACCAGTCTTGAATTCTAAGGTGAGTGGTATATCTATGTGCTGCCCT TCATGTGAGCAACACCAGCAGCTGCGTTGACGGTATAGGACCTCACCGTG TTGGAGGGCGGCCTTGAAAAAACGTACCTCCAACAACCCCCCCGCAGTCG ACCATCCCGCTTGCTTTGCATGTTGCTCAAAATCAAACCGTGAAACTGTA ACTGGATTCCCGTTGGGCTTTGAGCTGGAATGCTCATAAAAAATATGCGA CGATGATAGGTTAAAGAGGTCGACCTCTGTCCACTTCTTGTGCGTTGTTT TGCAGACCTTCTCAAGAAAGACGTATTCTGATTTCAACTTCGTCTTCGTC GATGTCGAACAGATGAAACATGTGATGGTGGCATCGTCGGCATCCAGACG GCCGATGTCTGTTGCGCCTTGAGCTGCGGTTCGTGCGGAGGGACCGGATG CAGCCAAAGGGAGGGCGGCAGCACGTCTTGCTGCTACGATGATATTCAGG CAAACGGAGATTCGTGCGGCTCGGTTGATTCAGCGCCGTGCCGCTTGGAC GATTGAAGAGGTTGAAGGCACGTATGCATATGCGAGCATGACGACGGCGG GATGAGCAGCACATAGTCATCTGGTTTGGTTCATGGTCCAAGAGTAGGAT CTGCGACTGGTGTGTAACAGAGCGCGGGCAGTGGGGTATATCGTTCAAGG TTTTCTGTCTTATTCCGCCTGTCTCCTGTGTCCTTGACGCGTCAGTTTGC TGGGCAGATGTAGTGAGTGAGGCATACTGCCAAGAGCTATGGGTGTTGTG GTGGGTTCCGCAACCATGCTGATTTTGCCACAAAATTTGGGCCAGTCTTT AGGAATCCGTCCCTTCACTGTTTGCGTTTGGACGGAGACGAACGCCGGTT TTCGTATCGTTCTTGTAAGATTAAGGTACCGGCAGCACCTGGGCAGAAAT AGCCAGCTGCCACACACGGGCAAGGCTTGGGGCTTCTCAGCATAATCACC CTGCACAGGGAGTTCCAGCGCGCTGGCTAGTGCATAAATATATTACTTTG ATTTAGTTTTGACAACAACGGAAGAAAATGAACTGACTTATTGACTGATC GAGAGTGTAAGTCGGAAATGGCAAGCCACGGAGGTCTGAGGTGCACCCGG TACACGCTCGACATGCTCCGTGCGTCTTGGTAGAGAGTGATCTTTTTGAA GAGACCCTACTCCTTTTTTGTCCCGGCCTGGAGTCGATCGTAAGTGGTGT CAGCTGGGGGATGGATGGGTCCTGCAGTTGGGATGTTACCTTCCACACGT CGGAAAGATGAGATCCCTACAGATTCAGCTATTTCGCTCTTTTTGAGGGG TATGTCCCTATTGATCGGTAGGACGTAGGTGATCGGTGTATGGTTGCCCC ATGGTGATCTGAAGGACATAGGTGACCGGTGCATGTTTGCTACATGGTGA TTTGTACGGCATTAGGTGATCGGTGTATGGTTGCTCCATCGTGACCTGTA GGGCATAGGTGAGCTAGCTCACGATCTATTTGACGTGTCTAAAATAAATA CATTTTATAAACCCCTGTGATGGGTGTATCCCTGGAAATGTCCTCTGTAA CTGTAGTGTGCAGAGGCTCACAGAGTGAAGCACACTTGTGTTGTAGACCA GATAAGACGGTTTGAATTGGCGCATAGTTGGCCGAAAGGTCAAGGAAAGT GAAAGGAGTGAGCGAGTGGGGGCGAGCACCACGGGGTGCGAGCCATCACT CCTCATAAAGGAGGAAAGACACACACACGGACTGTTGCAACGTACCAATC GCGGACGGTTACTCCGACCTGTAGCAACGTTACAAGAATATCCTACAATG GTCCGATATGCCATCCTTCTGTTGATCAATGTTTTGACCAGTAGACCAGT AGTCTAGACTACATAGGTGTGTACGATAATCCGATCGTTGAATCAATGCA CCGAAGACCATTGTTCCGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1613:9..4028+

>mRNA_E-fasciculatus_F_contig1613.4190.1 ID=mRNA_E-fasciculatus_F_contig1613.4190.1|Name=mRNA_E-fasciculatus_F_contig1613.4190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1613:9..4028+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCGACGGCGACATTCCCGGCATCCAAGTGAGCGATGTATGCTGCTC
CTCAAGCTGCGGGTCGTGCGGAGGTTCCGGGTGCACTGGCAGGGACGGTG
GAGCCGAAGCCTGCTGTGGTGGCGGAGTTAGGGCATCCGGTCGCGACTGC
TCTGTTACGGGAGAAGCACCCTGCGTTGTTTCCGATGTGCGACGGCGACA
TTCCCGGCATCCAAGTGAGCGATGTATGCTGCTCCTCAAGCTGCGGGTCG
TGCGGAGGTTCCGGGTGCACTGGCAGGGACGGTGGAGCCGAAGCCTGCTG
TGGTGGCGGAGTTAGGGCATCCGGTCGCGACTGCTCTGTTACGGGAGAAG
CACCCTGCGTTGTTTCCGGCCCGACCCCTGCACCGGCTCCTACACCTGAA
GGCCCGACCCCTGCACCGGCTCCTACACCTGAAGTTGAGATGTGCGACGG
CGACATTCCCGGCATCCAAGTGAGCGATGTATGCTGCTCCTCAAGCTGCG
GGTCGTGCGGAGGTTTCGGGTGCACTGGCAGGGACGGTGGAGCCGAAGCC
TGCTGTGGTGGCGGAGTCAGGGCGTCCGGTCGCGAGTGCTCCGTTACGGG
AGAAGCACCCTGCGTTGTTTCCGTTGAGATGTGCGACGGCGACATTCCCG
GCATCCAAGTGAGCGATGTATGCTGCTCCTCAAGCTGCGGGTCGTGCGGA
GGTTTCGGGTGCACTGGCAGGGACGGTGGAGCCGAAGCCTGCTGTGGTGG
CGGAGTCAGGGCGTCCGGTCGCGAGTGCTCCGTTACGGGAGAAGCACCCT
GCGTTGTTTCCGGCTAAGCTAA
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