mRNA_E-fasciculatus_F_contig16116.4186.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16116.4186.1
Unique NamemRNA_E-fasciculatus_F_contig16116.4186.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16116.4186.1 vs. uniprot
Match: D7G2I3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I3_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 5.410e-145
Identity = 228/242 (94.21%), Postives = 231/242 (95.45%), Query Frame = 1 
Query:    1 FSLSRSSATVGGGKSGKXXXXXXXXXSSMAVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTSLLKTSIQKLKDRLETQKRHAQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEMVDGTERRTFTFLAESKDDKELWLYQIR 726
             SL RSSATVG  KSGK XXXXXX    + VGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQT+LLKTSIQKLKDRLETQKRH QFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDE+VDGTERRTFTFLAESKDDKELWLYQIR
Sbjct:    1 MSLHRSSATVGDDKSGKGXXXXXX----VVVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVDGTERRTFTFLAESKDDKELWLYQIR 238
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BLAST of mRNA_E-fasciculatus_F_contig16116.4186.1 vs. uniprot
Match: A0A6H5JJ45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 3.220e-130
Identity = 211/242 (87.19%), Postives = 224/242 (92.56%), Query Frame = 1 
Query:    1 FSLSRSSATVGGGKSGKXXXXXXXXXSSMAVGKDSSRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTSLLKTSIQKLKDRLETQKRHAQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEMVDGTERRTFTFLAESKDDKELWLYQIR 726
             SL RSS  VG GKSGK  XXX    SS+ VGKDSSRHLWGIPNVVYTFTHGFM EMLQLKMLKSQT+LLKTSIQKLKDRLETQKRH +FKN+TIDKS K K GTLSVMK+KVTMSQAATNARESTRRRKNSVTSRAM++VKRPVQQKWTEA+DWKKRSC+LTGESLSLFSDPKDTEPSQIVYL GATAEPELGQAFK+SAFRVETNKWKKGD++VDGTERRTFTFLAESKDD+ELWLYQIR
Sbjct:  303 MSLDRSSGRVGDGKSGKGGXXX----SSVVVGKDSSRHLWGIPNVVYTFTHGFMREMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEEFKNETIDKSHKHKEGTLSVMKHKVTMSQAATNARESTRRRKNSVTSRAMRKVKRPVQQKWTEAVDWKKRSCILTGESLSLFSDPKDTEPSQIVYLTGATAEPELGQAFKESAFRVETNKWKKGDDLVDGTERRTFTFLAESKDDRELWLYQIR 540
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16116.4186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I3_ECTSI5.410e-14594.21PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJ45_9PHAE3.220e-13087.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16116contigE-fasciculatus_F_contig16116:213..2579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_001630.1
Exons5
Model size726
Cds size726
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16116.4186.1prot_E-fasciculatus_F_contig16116.4186.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16116 213..2579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.6532133-CDS-E-fasciculatus_F_contig16116:212..3551622928078.6532133-CDS-E-fasciculatus_F_contig16116:212..355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 213..355 +
1695995814.7303343-CDS-E-fasciculatus_F_contig16116:212..3551695995814.7303343-CDS-E-fasciculatus_F_contig16116:212..355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 213..355 +
1622928078.670348-CDS-E-fasciculatus_F_contig16116:614..7441622928078.670348-CDS-E-fasciculatus_F_contig16116:614..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 615..744 +
1695995814.7472808-CDS-E-fasciculatus_F_contig16116:614..7441695995814.7472808-CDS-E-fasciculatus_F_contig16116:614..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 615..744 +
1622928078.6828382-CDS-E-fasciculatus_F_contig16116:1034..11121622928078.6828382-CDS-E-fasciculatus_F_contig16116:1034..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 1035..1112 +
1695995814.7585416-CDS-E-fasciculatus_F_contig16116:1034..11121695995814.7585416-CDS-E-fasciculatus_F_contig16116:1034..1112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 1035..1112 +
1622928078.6953323-CDS-E-fasciculatus_F_contig16116:1706..19401622928078.6953323-CDS-E-fasciculatus_F_contig16116:1706..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 1707..1940 +
1695995814.7690115-CDS-E-fasciculatus_F_contig16116:1706..19401695995814.7690115-CDS-E-fasciculatus_F_contig16116:1706..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 1707..1940 +
1622928078.7120476-CDS-E-fasciculatus_F_contig16116:2438..25791622928078.7120476-CDS-E-fasciculatus_F_contig16116:2438..2579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 2439..2579 +
1695995814.7841456-CDS-E-fasciculatus_F_contig16116:2438..25791695995814.7841456-CDS-E-fasciculatus_F_contig16116:2438..2579Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16116 2439..2579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16116.4186.1

>prot_E-fasciculatus_F_contig16116.4186.1 ID=prot_E-fasciculatus_F_contig16116.4186.1|Name=mRNA_E-fasciculatus_F_contig16116.4186.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=242bp
FSLSRSSATVGGGKSGKGHGHGGGGGSSMAVGKDSSRHLWGIPNVVYTFT
HGFMMEMLQLKMLKSQTSLLKTSIQKLKDRLETQKRHAQFKNQTIDKSQK
QKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWT
EALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDS
AFRVETNKWKKGDEMVDGTERRTFTFLAESKDDKELWLYQIR
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mRNA from alignment at E-fasciculatus_F_contig16116:213..2579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16116.4186.1 ID=mRNA_E-fasciculatus_F_contig16116.4186.1|Name=mRNA_E-fasciculatus_F_contig16116.4186.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2367bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16116:213..2579+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTCCCTCAGCCGATCGTCCGCGACGGTCGGTGGCGGCAAGAGCGGCAA
GGGCCACGGCCACGGCGGCGGCGGCGGATCGTCGATGGCGGTGGGAAAAG
ACTCCTCCAGACACCTTTGGGGGATCCCTAACGTCGTCTACACGTGAGAG
CCGTCGCAGCGCAGCAGTTGTTCGATTTCCTCCGAGAAATGAGTTTTGAG
AATGTTGCAAGTCTTGGCTTGGCTGAAAAATAAGTTCCAAGTTTCCAAAT
TAATAATTTGTCGCCCTTTTATTTTTTTTTCGCAAGATGTAGCCTCGAAA
AATTGATTTTGAGTTGGGCCAATTTTCGGTCAAAGAAATGTGGTTTCGTT
TTTCGCCTTACAGCAGCACATTTTGATTGGGTCCGTTTTTTTTCTTCGCC
AGGTTCACGCACGGGTTCATGATGGAGATGCTGCAGCTCAAGATGCTCAA
GAGCCAGACCAGCCTCCTCAAAACTAGCATCCAGAAGCTCAAGGACAGAC
TCGAGACCCAGAAGAGACACGCGCAGTTCAAGGTTGGCCGTCCTCCCTCC
TTGCTTGCCTTTGACTGCTCTAGCTGGCTGCCTCCCTTCTTTTGCATGGG
GTGCTGAGGGGGTGTTGTAGTGTCCGGGATGCCTTTTTGGCGAAGCGTTT
TGATCGCGAGAGATGCCTCCCGGGGACCATCGAACACCGAACCGGGGGGG
TGTTGGACACCAATCGAGGGCAGTTTACGACCGAGGAGTGATAGCAGTTG
TCGTGCTTGGTGTGTACACTAATTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCCCGACGATTCGAGTAACAGAACCAGACCATCGACAAATCCCAAAAGC
AGAAGGCCGGAACGCTGTCCGTCATGAAGTACAAGGTCACCATGTCACAG
GTGACTGACTTTGTTTCCCTTGGTTTTTATCATCGCTGTTTTTTTTTGTT
TCACTGCAGACAAGGCGGGAGTTTTTGGCTGCGTTAACTGTCGCGTGATT
TTTGCGGAAACGTGGATTGTATATGTCATCTCCAGTTCCATGCGCAAACA
CACACTATAACGGCGCCTGTCGTTTGTCGTATCGGCCGCGGCGGCGTTGA
TATCGGCGAATAATGTATTGTTGTTGTTTATTTGCTGTCATTGTTGCTGC
GTGTTCATGTTGTTGGCACAAATCGATGACGAACATGAGACACAAGAATC
AGATCACGTAATTTCGTGTCCTTACAGCTTGTGTCGGACGCTGCTGTTGC
TTGAAAATTGAAGATGAGATTGAAAACACACAACAAACGCATTGGCACAC
ACCAAGGCTTGCTTAGCATCAACCTATGTGCCTGCTTGCGCAAAACAAAA
CGCATTAAATAATGAAATAAGTGATTCAACAAATCAACACGCAAACACAT
GCGCACACACGGGCTTTTGCTTAGCACCAACGTATGTACCTGAATACAAA
AACTAAATAAATCAAATCAAACAATTACATGAAAAATATATCAGGCGGCG
ACGAACGCGCGCGAGTCCACCCGGCGACGGAAGAATTCTGTCACGTCGAG
GGCAATGCAAAGGGTCAAGCGCCCCGTGCAGCAGAAGTGGACTGAGGCTC
TGGACTGGAAGAAGCGGAGTTGCCTTCTCACGGGGGAGAGCCTGTCTCTG
TTCAGCGACCCGAAGGACACGGAGCCGAGCCAGATCGTGTACCTTAAGGG
CGCCACGGCGGAGCCCGAGCTAGGACAGGTTTGCTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTAGTTGAGAC
GGTTGATGGATAGATGGACGGGTGGATGAAAGTATTTGTAGCCCTACGGA
GGAAGTAACGCTAAAGCGAACCCCACGGCATTCATCGCGTCAGCTTTAGC
TTTAGCTTTGTGGGTGGCGCCCACAACTAAAATTGGTTCGGCGTCCCTTG
CATATACCGTACCTTCAGCGGGTTGGTCCGTGGGCGTCTTGCGATAACGC
CGCGGGACGACTAGACGACCCGTCACGGGCCCTGGCCTGGTTTTCCCGCA
TGCTAACCTCAGCCTCGCCGTGTTCGTACCCACCCACACATGGCGGCTCC
GCACTTCCCTCGAAACCAAACCACTCGCCCTATCTCCCCCCGCCTCAACA
CCCGCCGGGTTTTACACGCCCGCGGGTTGGAAACAACCATGGGACACGCG
GGTTTTTTGCACGTGGGACGGGACAGGCTTTCAAGGACTCGGCCTTCCGC
GTGGAGACGAACAAGTGGAAGAAGGGGGACGAGATGGTGGACGGGACGGA
GAGACGGACGTTTACGTTCCTCGCCGAGAGCAAGGATGACAAGGAGCTGT
GGCTCTACCAGATCAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16116:213..2579+

>mRNA_E-fasciculatus_F_contig16116.4186.1 ID=mRNA_E-fasciculatus_F_contig16116.4186.1|Name=mRNA_E-fasciculatus_F_contig16116.4186.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16116:213..2579+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTTCCCTCAGCCGATCGTCCGCGACGGTCGGTGGCGGCAAGAGCGGCAA
GGGCCACGGCCACGGCGGCGGCGGCGGATCGTCGATGGCGGTGGGAAAAG
ACTCCTCCAGACACCTTTGGGGGATCCCTAACGTCGTCTACACTTTTCCC
TCAGCCGATCGTCCGCGACGGTCGGTGGCGGCAAGAGCGGCAAGGGCCAC
GGCCACGGCGGCGGCGGCGGATCGTCGATGGCGGTGGGAAAAGACTCCTC
CAGACACCTTTGGGGGATCCCTAACGTCGTCTACACGTTCACGCACGGGT
TCATGATGGAGATGCTGCAGCTCAAGATGCTCAAGAGCCAGACCAGCCTC
CTCAAAACTAGCATCCAGAAGCTCAAGGACAGACTCGAGACCCAGAAGAG
ACACGCGCAGTTCAAGGTTCACGCACGGGTTCATGATGGAGATGCTGCAG
CTCAAGATGCTCAAGAGCCAGACCAGCCTCCTCAAAACTAGCATCCAGAA
GCTCAAGGACAGACTCGAGACCCAGAAGAGACACGCGCAGTTCAAGAACC
AGACCATCGACAAATCCCAAAAGCAGAAGGCCGGAACGCTGTCCGTCATG
AAGTACAAGGTCACCATGTCACAGAACCAGACCATCGACAAATCCCAAAA
GCAGAAGGCCGGAACGCTGTCCGTCATGAAGTACAAGGTCACCATGTCAC
AGGCGGCGACGAACGCGCGCGAGTCCACCCGGCGACGGAAGAATTCTGTC
ACGTCGAGGGCAATGCAAAGGGTCAAGCGCCCCGTGCAGCAGAAGTGGAC
TGAGGCTCTGGACTGGAAGAAGCGGAGTTGCCTTCTCACGGGGGAGAGCC
TGTCTCTGTTCAGCGACCCGAAGGACACGGAGCCGAGCCAGATCGTGTAC
CTTAAGGGCGCCACGGCGGAGCCCGAGCTAGGACAGGCGGCGACGAACGC
GCGCGAGTCCACCCGGCGACGGAAGAATTCTGTCACGTCGAGGGCAATGC
AAAGGGTCAAGCGCCCCGTGCAGCAGAAGTGGACTGAGGCTCTGGACTGG
AAGAAGCGGAGTTGCCTTCTCACGGGGGAGAGCCTGTCTCTGTTCAGCGA
CCCGAAGGACACGGAGCCGAGCCAGATCGTGTACCTTAAGGGCGCCACGG
CGGAGCCCGAGCTAGGACAGGCTTTCAAGGACTCGGCCTTCCGCGTGGAG
ACGAACAAGTGGAAGAAGGGGGACGAGATGGTGGACGGGACGGAGAGACG
GACGTTTACGTTCCTCGCCGAGAGCAAGGATGACAAGGAGCTGTGGCTCT
ACCAGATCAGGGCTTTCAAGGACTCGGCCTTCCGCGTGGAGACGAACAAG
TGGAAGAAGGGGGACGAGATGGTGGACGGGACGGAGAGACGGACGTTTAC
GTTCCTCGCCGAGAGCAAGGATGACAAGGAGCTGTGGCTCTACCAGATCA
GG
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