mRNA_E-fasciculatus_F_contig1611.4180.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1611.4180.1
Unique NamemRNA_E-fasciculatus_F_contig1611.4180.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1611.4180.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 1.110e-76
Identity = 123/139 (88.49%), Postives = 128/139 (92.09%), Query Frame = 1 
Query:    1 LSGNDIPPLDVEEMQEYASSNVELRAVADAPESYDLWQASAIIEACLVAKFDRLPPGVADALKKNATFIEDEGPMREAVLAASPLTKQELLRNSPGAEEIAIKAKEFADSPSSWIQSAIDAPEDFTALGDERPDGPPLL 417
            LSGNDIPP DVEEMQ YASSNVELRAVADAPESYDLWQAS I+E CLVAKFDRLPPGVADALKKN TFIE+EGPMREAVLAASPLTKQELLRNSPGA++IAIKAK F DSPSSWIQSAIDAPEDF ALG+  PD PPLL
Sbjct:  262 LSGNDIPPSDVEEMQGYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFIEEEGPMREAVLAASPLTKQELLRNSPGADDIAIKAKGFVDSPSSWIQSAIDAPEDFMALGEGGPDDPPLL 400
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BLAST of mRNA_E-fasciculatus_F_contig1611.4180.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 9.910e-56
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 LSGNDIPPLDVEEMQEYASSNVELRAVADAPESYDLWQASAIIEACLVAKFDRLPPGVADALKKNATFIEDEGPMREAVLAASPLTKQELLRNSPGAEEIAIK 309
            LSGNDIPP DVEEMQEYASSNVELRAVADAPESYDLWQAS I+E CLVAKFDRLPPGVADALKKN TF+E+EGPMREAVLAASPLTKQELLRNSPGAE+IA+K
Sbjct:  238 LSGNDIPPSDVEEMQEYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALKKNPTFVEEEGPMREAVLAASPLTKQELLRNSPGAEDIAMK 340
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1611.4180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSY1_ECTSI1.110e-7688.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LDS7_9PHAE9.910e-5691.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1611contigE-fasciculatus_F_contig1611:8801..10425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-26_001840.1
Hectar predicted targeting categoryother localisation
Exons3
Model size421
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1611.4180.1prot_E-fasciculatus_F_contig1611.4180.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1611 8801..10425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.1345317-CDS-E-fasciculatus_F_contig1611:8800..89111622928078.1345317-CDS-E-fasciculatus_F_contig1611:8800..8911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 8801..8911 -
1695995814.4760594-CDS-E-fasciculatus_F_contig1611:8800..89111695995814.4760594-CDS-E-fasciculatus_F_contig1611:8800..8911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 8801..8911 -
1622928078.1469958-CDS-E-fasciculatus_F_contig1611:9407..96291622928078.1469958-CDS-E-fasciculatus_F_contig1611:9407..9629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 9408..9629 -
1695995814.488132-CDS-E-fasciculatus_F_contig1611:9407..96291695995814.488132-CDS-E-fasciculatus_F_contig1611:9407..9629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 9408..9629 -
1622928078.1570375-CDS-E-fasciculatus_F_contig1611:10338..104251622928078.1570375-CDS-E-fasciculatus_F_contig1611:10338..10425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 10339..10425 -
1695995814.4976802-CDS-E-fasciculatus_F_contig1611:10338..104251695995814.4976802-CDS-E-fasciculatus_F_contig1611:10338..10425Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 10339..10425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1611.4180.1

>prot_E-fasciculatus_F_contig1611.4180.1 ID=prot_E-fasciculatus_F_contig1611.4180.1|Name=mRNA_E-fasciculatus_F_contig1611.4180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
LSGNDIPPLDVEEMQEYASSNVELRAVADAPESYDLWQASAIIEACLVAK
FDRLPPGVADALKKNATFIEDEGPMREAVLAASPLTKQELLRNSPGAEEI
AIKAKEFADSPSSWIQSAIDAPEDFTALGDERPDGPPLL*
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mRNA from alignment at E-fasciculatus_F_contig1611:8801..10425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1611.4180.1 ID=mRNA_E-fasciculatus_F_contig1611.4180.1|Name=mRNA_E-fasciculatus_F_contig1611.4180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1625bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:8801..10425- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCGGGGAACGATATTCCCCCTTTGGACGTTGAGGAGATGCAAGAGTA
TGCCTCGTCGAACGTCGAACTACGGGCCGTAGCAGATGTGAGAAAATGGG
TATAGCGATGGGTGGTGCAACCCTTGGTGGGGAACGTAAAACGGTCCCGC
CTATTTTGAACCCACACGCCATCAAACACGCACGATTCGGCCTTCTTTCG
GACCCATACGTCCGTCATGAAACAGCATAATTGTCGAAACCATTTTAGCG
AGACAGTCTACGCAATTGCCTGGATGGAATGCCAAGCGTGTTAATTATGC
ACATAGAAAACATCATAAGTTCACTTCCACTCGCTTTATATTCTTGTTTC
ATGTTAAAAACGTTCCCAAGTCGTCTGTCCCCAAGCGCCAGAGACAACAG
TTACTTGACCCAAGCACCAGAGACAACAGTTACTTGACCGTGTTCCTTAG
GGTTGCCCCCCCTCCAACAGTCTACGAATGTGTAGCTCACGATATTTGCT
TGTTTACAGTTTCGAACAAGTACAAAGTCCCTGCACACCACGGCACCGGG
TACGCAAAGAAGTAGCCAGTAAATCTGCGAACAGAAGGAATCGTCCTCTA
CAGGGTACGCTTCCTCTATGATGACCGACGGGGGGGGGTGGGTGAGAGGA
ACGCCTTCGTCTTTGGTTCCACCCTGGCGGTGTGCCTTGCAGCATAGTGG
GCGGAATCCAAGACAAAAGACAAGAAAAATATGGTCGTGCTCAACGCCTT
GGCACTAACTACATGCGATTGATTAGGCACTTGCTCCCGCTCACAGGCGC
CGGAGAGCTACGACTTGTGGCAAGCATCCGCGATAATCGAAGCCTGCCTG
GTGGCCAAGTTCGACCGCTTGCCACCGGGCGTTGCGGACGCCCTGAAGAA
AAACGCCACCTTTATCGAAGACGAGGGGCCGATGCGAGAGGCGGTGCTGG
CTGCTTCGCCCCTCACCAAGCAAGAGCTATTGAGGAACAGCCCCGGGGCG
GAGGAGATCGCCATAAAGGTTGGATGTGGAGGGAAGGGAAGGTTGTGATG
CGTCCAAAAATATGTCACCTCGCTAATATTTCCCTCAATAATGGGGAGAA
AGAAGTCGAGGACGCTTGGTGCGAAGGTGTAGAGAAGAAGACATCTATGG
TGCGGGGGGGGGAGGGGTGAAGTTCATCGTTGTTTCCCGACCTAGCGGTT
TTTCACAAGCAGTTGATAATCTTGTTTCCGAGCAGCCTAGGGTTGGAGAG
TGCTGAGCTACATAGGCGCCTGTGGTGAAGGCGCCGCGCATGCTTGGGGG
TGAAAACCGTGGAATCGGGGGACGTACGCACAGGCAGCTTGGTTTGGAAT
AAATAGGGCTGGCGTTCCACTTCTTCTATGCATAGTCTAACTTGTCCACA
ACACATCTACTTGTCCTAGCAGAAGTGCCGTCCACTAACGCCCTGCTCCG
TCGCAACAACAGCAAGTCCTCTCCCCGTCCCCTTCTTCCGAACGCCTTCC
CCCCCAAAACGCAGGCGAAAGAGTTTGCGGACAGTCCGTCTTCATGGATA
CAGTCCGCCATCGATGCTCCCGAAGACTTCACGGCGCTGGGCGATGAAAG
GCCCGACGGCCCGCCACTTCTCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1611:8801..10425-

>mRNA_E-fasciculatus_F_contig1611.4180.1 ID=mRNA_E-fasciculatus_F_contig1611.4180.1|Name=mRNA_E-fasciculatus_F_contig1611.4180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:8801..10425- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTCGGGGAACGATATTCCCCCTTTGGACGTTGAGGAGATGCAAGAGTA
TGCCTCGTCGAACGTCGAACTACGGGCCGTAGCAGATCTGTCGGGGAACG
ATATTCCCCCTTTGGACGTTGAGGAGATGCAAGAGTATGCCTCGTCGAAC
GTCGAACTACGGGCCGTAGCAGATGCGCCGGAGAGCTACGACTTGTGGCA
AGCATCCGCGATAATCGAAGCCTGCCTGGTGGCCAAGTTCGACCGCTTGC
CACCGGGCGTTGCGGACGCCCTGAAGAAAAACGCCACCTTTATCGAAGAC
GAGGGGCCGATGCGAGAGGCGGTGCTGGCTGCTTCGCCCCTCACCAAGCA
AGAGCTATTGAGGAACAGCCCCGGGGCGGAGGAGATCGCCATAAAGGCGC
CGGAGAGCTACGACTTGTGGCAAGCATCCGCGATAATCGAAGCCTGCCTG
GTGGCCAAGTTCGACCGCTTGCCACCGGGCGTTGCGGACGCCCTGAAGAA
AAACGCCACCTTTATCGAAGACGAGGGGCCGATGCGAGAGGCGGTGCTGG
CTGCTTCGCCCCTCACCAAGCAAGAGCTATTGAGGAACAGCCCCGGGGCG
GAGGAGATCGCCATAAAGGCGAAAGAGTTTGCGGACAGTCCGTCTTCATG
GATACAGTCCGCCATCGATGCTCCCGAAGACTTCACGGCGCTGGGCGATG
AAAGGCCCGACGGCCCGCCACTTCTCTGAGCGAAAGAGTTTGCGGACAGT
CCGTCTTCATGGATACAGTCCGCCATCGATGCTCCCGAAGACTTCACGGC
GCTGGGCGATGAAAGGCCCGACGGCCCGCCACTTCTCTGA
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