mRNA_E-fasciculatus_F_contig1611.4182.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1611.4182.1
Unique NamemRNA_E-fasciculatus_F_contig1611.4182.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1611.4182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1611contigE-fasciculatus_F_contig1611:15203..15543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1611.4182.1prot_E-fasciculatus_F_contig1611.4182.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1611 15213..15543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928077.8834321-UTR-E-fasciculatus_F_contig1611:15202..152121622928077.8834321-UTR-E-fasciculatus_F_contig1611:15202..15212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1611 15203..15212 +
1695995814.332996-UTR-E-fasciculatus_F_contig1611:15202..152121695995814.332996-UTR-E-fasciculatus_F_contig1611:15202..15212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1611 15203..15212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928077.8958209-CDS-E-fasciculatus_F_contig1611:15212..153901622928077.8958209-CDS-E-fasciculatus_F_contig1611:15212..15390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 15213..15390 +
1695995814.3449516-CDS-E-fasciculatus_F_contig1611:15212..153901695995814.3449516-CDS-E-fasciculatus_F_contig1611:15212..15390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 15213..15390 +
1622928077.9105124-CDS-E-fasciculatus_F_contig1611:15454..155431622928077.9105124-CDS-E-fasciculatus_F_contig1611:15454..15543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 15455..15543 +
1695995814.3587542-CDS-E-fasciculatus_F_contig1611:15454..155431695995814.3587542-CDS-E-fasciculatus_F_contig1611:15454..15543Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1611 15455..15543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1611.4182.1

>prot_E-fasciculatus_F_contig1611.4182.1 ID=prot_E-fasciculatus_F_contig1611.4182.1|Name=mRNA_E-fasciculatus_F_contig1611.4182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
MDVVGGRVRVRKFVESIRRPLMFTGRSPMIFCRDLYMCTDDVYGRPWTLV
DVSVNVHGRPRTSTDVHGRVHGLRSRYRCPRSRTRSRTC
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mRNA from alignment at E-fasciculatus_F_contig1611:15203..15543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1611.4182.1 ID=mRNA_E-fasciculatus_F_contig1611.4182.1|Name=mRNA_E-fasciculatus_F_contig1611.4182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=341bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:15203..15543+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACAAGAGCCATGGACGTCGTCGGTGGCCGGGTTCGCGTTCGGAAGTTCG
TTGAGAGCATTCGGCGTCCACTGATGTTCACTGGCAGATCCCCTATGATC
TTCTGCCGAGACCTTTATATGTGCACGGACGATGTTTATGGACGTCCGTG
GACGCTCGTGGACGTGTCCGTGAACGTCCATGGACGTCCACGGACGTCCA
CGGACGGACGTCCACGGACGTCCACGGACGTTCACGGACGTCCACGGACG
TTCACGGACGTCCACGGACGTTCACGGACGTGTCCATGGACTGCGATCGA
GGTACCGATGTCCACGGTCACGTACGCGTTCACGAACTTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1611:15203..15543+

>mRNA_E-fasciculatus_F_contig1611.4182.1 ID=mRNA_E-fasciculatus_F_contig1611.4182.1|Name=mRNA_E-fasciculatus_F_contig1611.4182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:15203..15543+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTCGTCGGTGGCCGGGTTCGCGTTCGGAAGTTCGTTGAGAGCAT
TCGGCGTCCACTGATGTTCACTGGCAGATCCCCTATGATCTTCTGCCGAG
ACCTTTATATGTGCACGGACGATGTTTATGGACGTCCGTGGACGCTCGTG
GACGTGTCCGTGAACGTCCATGGACGTCATGGACGTCGTCGGTGGCCGGG
TTCGCGTTCGGAAGTTCGTTGAGAGCATTCGGCGTCCACTGATGTTCACT
GGCAGATCCCCTATGATCTTCTGCCGAGACCTTTATATGTGCACGGACGA
TGTTTATGGACGTCCGTGGACGCTCGTGGACGTGTCCGTGAACGTCCATG
GACGTCCACGGACGTCCACGGACGTTCACGGACGTGTCCATGGACTGCGA
TCGAGGTACCGATGTCCACGGTCACGTACGCGTTCACGAACTTGTCACGG
ACGTCCACGGACGTTCACGGACGTGTCCATGGACTGCGATCGAGGTACCG
ATGTCCACGGTCACGTACGCGTTCACGAACTTGT
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