mRNA_E-fasciculatus_F_contig16095.4171.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16095.4171.1
Unique NamemRNA_E-fasciculatus_F_contig16095.4171.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16095.4171.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.830e-80
Identity = 138/153 (90.20%), Postives = 143/153 (93.46%), Query Frame = 1 
Query:   10 QACAGEGVWTPAVAGAWRDVMSFAILAVVERTVESWGSSNGTSLSEMWHALSDWRSRTSKDKFLSPTASSSSPMNADGSSRARKGSNDRGKGGKVSSSSAFSTGSSLGSNGSGRPPEAPPPLGRRDLDDGAHHLHHKKGLGSLSFKRKGSGGA 468
            +ACAGEGVWTP +AGAWRDVMSFAILAVVERTVESWGS++GTSLSEMWHALSDWRSRTSK  FLSPTASSSSPMNAD S R RKG NDRGKG K +SSSAFSTGSSLGSNGSGRPPEAPPPLGRRDLDDGAHHLHHKKGLGSLS KRKGSGGA
Sbjct:  182 EACAGEGVWTPDIAGAWRDVMSFAILAVVERTVESWGSTHGTSLSEMWHALSDWRSRTSKYNFLSPTASSSSPMNADSSGRGRKGINDRGKGSKATSSSAFSTGSSLGSNGSGRPPEAPPPLGRRDLDDGAHHLHHKKGLGSLSIKRKGSGGA 334
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BLAST of mRNA_E-fasciculatus_F_contig16095.4171.1 vs. uniprot
Match: D7FHK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.700e-35
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:  229 MNADGSSRARKGSNDRGKGGKVSSSSAFSTGSSLGSNGSGRPPEAPPPLGRRDLDDGAHHLHHKKGLGSLSFKRKGSGGA 468
            MNAD   R RKGSNDRGKG K +SSSAFST SSLGSNGSGRPPEAPPPLGRRDLDDGAHHL+HKKGLGSLSFKRKGSGGA
Sbjct:    1 MNADSGGRGRKGSNDRGKGSKATSSSAFSTASSLGSNGSGRPPEAPPPLGRRDLDDGAHHLNHKKGLGSLSFKRKGSGGA 80
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BLAST of mRNA_E-fasciculatus_F_contig16095.4171.1 vs. uniprot
Match: D7FHK8_ECTSI (Hemoglobin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.440e-20
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   10 QACAGEGVWTPAVAGAWRDVMSFAILAVVERTVESWGSSNGTSLSEMWHALSDWRSR 180
            +ACAGEGVWTP +AGAWRDVMSFAILAVVERTVESWGS++GTSLSE+   +  W +R
Sbjct:  112 EACAGEGVWTPDIAGAWRDVMSFAILAVVERTVESWGSTHGTSLSEVQLTVQKWWAR 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16095.4171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JC72_9PHAE1.830e-8090.20GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHK7_ECTSI6.700e-3588.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK8_ECTSI7.440e-2075.44Hemoglobin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16095contigE-fasciculatus_F_contig16095:3..2266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16095.4171.1prot_E-fasciculatus_F_contig16095.4171.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16095 3..2266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928076.2967262-CDS-E-fasciculatus_F_contig16095:2..1101622928076.2967262-CDS-E-fasciculatus_F_contig16095:2..110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 3..110 -
1695995813.5370517-CDS-E-fasciculatus_F_contig16095:2..1101695995813.5370517-CDS-E-fasciculatus_F_contig16095:2..110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 3..110 -
1622928076.3131077-CDS-E-fasciculatus_F_contig16095:1010..12231622928076.3131077-CDS-E-fasciculatus_F_contig16095:1010..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 1011..1223 -
1695995813.5464387-CDS-E-fasciculatus_F_contig16095:1010..12231695995813.5464387-CDS-E-fasciculatus_F_contig16095:1010..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 1011..1223 -
1622928076.3291943-CDS-E-fasciculatus_F_contig16095:2119..22661622928076.3291943-CDS-E-fasciculatus_F_contig16095:2119..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 2120..2266 -
1695995813.556079-CDS-E-fasciculatus_F_contig16095:2119..22661695995813.556079-CDS-E-fasciculatus_F_contig16095:2119..2266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16095 2120..2266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16095.4171.1

>prot_E-fasciculatus_F_contig16095.4171.1 ID=prot_E-fasciculatus_F_contig16095.4171.1|Name=mRNA_E-fasciculatus_F_contig16095.4171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=156bp
MECQACAGEGVWTPAVAGAWRDVMSFAILAVVERTVESWGSSNGTSLSEM
WHALSDWRSRTSKDKFLSPTASSSSPMNADGSSRARKGSNDRGKGGKVSS
SSAFSTGSSLGSNGSGRPPEAPPPLGRRDLDDGAHHLHHKKGLGSLSFKR
KGSGGA
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mRNA from alignment at E-fasciculatus_F_contig16095:3..2266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16095.4171.1 ID=mRNA_E-fasciculatus_F_contig16095.4171.1|Name=mRNA_E-fasciculatus_F_contig16095.4171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16095:3..2266- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAATGCCAGGCGTGTGCTGGAGAAGGGGTCTGGACCCCAGCCGTTGC
CGGTGCTTGGAGAGACGTGATGAGCTTTGCGATACTGGCGGTTGTGGAGC
GGACGGTGGAGAGCTGGGGGAGCAGCAACGGCACCAGTCTCTCAGAGGTA
CAGTATTGTACTGTCGTAGTATTGTAGTGGTGTACAACTGACTATTCCGG
CAGTGGTGGGCCCCGTTTAGCGACCCCTTTAGTGTGCGGAGGGAGGGAGG
GAGGGAGGGCGGTTGGTGTCAAGGGCAGGTCGCTTTTGCCGGCATAGCGG
CTGTTGGTCGGGGTGCGGTGGTGCCACGCGGTTTACGGTTGCTGTACATA
TGCATATTACAGAGCATGCCGCTAAAAAGGGGGTCGCAAGACCGCCGCCC
CCGCTGTACGTCGAGGGTGAGCACACTGATCCCACTCTGTTTGGAGATAT
AAGGGCCATTGGGATACGAATGTGAATATCCCAATGGCCCCCATGTTTCC
AAGCAAGAGTGGCATTATATATTGTGCACAAAGCCCCGTCGTGTGTGTTG
TATTTGGATAGAGGTGTAATTGTTTTTTGGGGGGATGTGTTGGGAGAGAT
CCAGAATGGATTGGATTGGATGTGCCATGAAGCGAGGGAAAGGTTTGCCT
GCCGCAGACACCAAGGCTGGCTGTTCACATCCAAAATGTTAAGGATAACT
TTCAACCGACACTACGCACCATTCACCCTCCCCCCTCAGTAGCCTGGGCC
AATGGTCTAACGACTACGGCATGCACAACTATGAGTACACCCCCCCCTCA
GCAGCCTGGACCGGTGAAAACCGGGCATACCACCCCGTCTGTAGGGATGC
GAGGTCAATGGTCTAACGACTACGGCATGCGCCCCCCCACCCACCCCCCC
ACCCCCCAGAAGGGACCGATTGGCCATCGGTGATCGGTCCTTTGGGAACA
ATACTCCGTCCTCTCGAGGACGCATGGTCCATGGTCTAACCCCGAAGGCA
TGCAAAGTATAAGAGTACGCCCCCCCCCCCCACCCTCCGACAGATGTGGC
ACGCGCTCTCGGACTGGCGATCCCGGACTTCAAAAGACAAGTTCTTGTCT
CCGACTGCATCATCATCGTCACCAATGAATGCCGACGGCAGCAGTAGGGC
TAGGAAAGGCAGCAATGATAGGGGGAAGGGGGGGAAGGTATCGTCATCGT
CGGCCTTCTCGACCGGGTCATCATTGGGCTCTAATGGCTCCGGCCGCCCC
CCTGAGGTATGGTAGCTAAGGGGTACAGTATGAGGCCGCTATGGAAAACG
ATGACCTTATAAAGGCACCCACCTAAAGTTTTTGTCGTGTGTGCCGTCCA
TCTACTGCAATGTATAGACTACAGCTATAGACTAACCGTGTGTAGACTCT
AGACTGAGCCCCCATAGCACTTGAATCTTGTAGATGGGGTGTGTGCTCTC
TACTGATGATGTCATAGACCCAGTTTTAACGCCGCTACAGGTCCAAGGGG
GAACAACGGCCTTATGTGGGCACTAACACCCACCCGGCACTGCTGTTCAG
AGCATGAGGCAACTTGAATGTTCCATCATCTGTACCAAGCGATTTCACCG
GCCTTATGCAGGGCAACCGGCCTTTAATGTGCACCCGTAGACAGGAACCT
CTGCTTAAGCCTGTAGATCTGTAGACAGATAGAACCTTACCTTACCTTGC
GTGGTGATGGTGATGGTGTTGGCGTCGTCGAAGTCGTTGTCGTCGTCGTT
GTTGTGGTGCCTGTTTTTTGTGTGTGACTGACTGACTGACTGACTGACTG
ACTGACTGACTGGTGGGTGTGGCCTTCCTGTTGGTGATAATGCTTTTTTT
TTGCTTTCATGGAAATGGTATTGGTATTGGTATTGGTACCGTCGTTATCG
TCGTCGTCGTCGATGTTTGTTGTCTGCGGTTTGCGGTGTGGTGGCTATGT
GGAGTGTGTGGATGATGGTGGATGATGGTGGATGATGGTGGGTGGGGTAT
TCCTGGTGGTGGTGGCGATAAAGCATTGGTGGAACTCGTACTGGCATCAT
CATCTTTGTTGCATTAGTGCTGTTGGTATCGAGTTTGCTGCTATCGCTGA
TGCGTTTTTGTAGTCGATGCCCTCAACCCCCCCCCCCCTCGTTTTCATCT
CTACAGGCCCCCCCACCTCTAGGCCGGAGAGACTTGGACGACGGAGCACA
TCACCTCCACCACAAGAAGGGGCTGGGAAGCTTGTCGTTCAAGCGAAAGG
GCAGCGGTGGTGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16095:3..2266-

>mRNA_E-fasciculatus_F_contig16095.4171.1 ID=mRNA_E-fasciculatus_F_contig16095.4171.1|Name=mRNA_E-fasciculatus_F_contig16095.4171.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16095:3..2266- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAATGCCAGGCGTGTGCTGGAGAAGGGGTCTGGACCCCAGCCGTTGC
CGGTGCTTGGAGAGACGTGATGAGCTTTGCGATACTGGCGGTTGTGGAGC
GGACGGTGGAGAGCTGGGGGAGCAGCAACGGCACCAGTCTCTCAGAGATG
GAATGCCAGGCGTGTGCTGGAGAAGGGGTCTGGACCCCAGCCGTTGCCGG
TGCTTGGAGAGACGTGATGAGCTTTGCGATACTGGCGGTTGTGGAGCGGA
CGGTGGAGAGCTGGGGGAGCAGCAACGGCACCAGTCTCTCAGAGATGTGG
CACGCGCTCTCGGACTGGCGATCCCGGACTTCAAAAGACAAGTTCTTGTC
TCCGACTGCATCATCATCGTCACCAATGAATGCCGACGGCAGCAGTAGGG
CTAGGAAAGGCAGCAATGATAGGGGGAAGGGGGGGAAGGTATCGTCATCG
TCGGCCTTCTCGACCGGGTCATCATTGGGCTCTAATGGCTCCGGCCGCCC
CCCTGAGATGTGGCACGCGCTCTCGGACTGGCGATCCCGGACTTCAAAAG
ACAAGTTCTTGTCTCCGACTGCATCATCATCGTCACCAATGAATGCCGAC
GGCAGCAGTAGGGCTAGGAAAGGCAGCAATGATAGGGGGAAGGGGGGGAA
GGTATCGTCATCGTCGGCCTTCTCGACCGGGTCATCATTGGGCTCTAATG
GCTCCGGCCGCCCCCCTGAGGCCCCCCCACCTCTAGGCCGGAGAGACTTG
GACGACGGAGCACATCACCTCCACCACAAGAAGGGGCTGGGAAGCTTGTC
GTTCAAGCGAAAGGGCAGCGGTGGTGCAGCCCCCCCACCTCTAGGCCGGA
GAGACTTGGACGACGGAGCACATCACCTCCACCACAAGAAGGGGCTGGGA
AGCTTGTCGTTCAAGCGAAAGGGCAGCGGTGGTGCA
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