mRNA_E-fasciculatus_F_contig16055.4145.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16055.4145.1
Unique NamemRNA_E-fasciculatus_F_contig16055.4145.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI)

HSP 1 Score: 586 bits (1510), Expect = 7.700e-201
Identity = 362/464 (78.02%), Postives = 377/464 (81.25%), Query Frame = 1 
Query:    1 SGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAPRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAGVALEPTSSEGVTRRGGTANPSSSSTWCPRATDEGRD--------GRRRGTGNALGFPKATAAVDVEE-ARAAGGCKRPRPXXXXXXXAEAGGAEGALRAGRDVDGGGEGD--AADDGRSSVDFWKMSAAGDERLRGGREGDGEHAPVPREGQCRRDLGREREDGEGRPEEGDDDNAVPLHLLVTPRESKASQICEGQGKRCSVD------------DARMVAGREGRDPAGVKEGRDNGFGGRAGPEERLGSS---AAAXXXXXXXXXAQGIGDERFHGDGGGGAEATNNGHRPLFGRGGSSGVFGDVDPAVLAELPPDIQREIWMQQ 1314
            +GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPV ARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKEL+SRLVEQQEGEGQTPSKLTVSFAALQQ APRLTMLGVSAHGFADSRKDTRSIQSFFGAAPA  ALEP+SSE V RRGGTAN SSS+ W PRATD GR         GR R TGNALGFPKATAAV VEE ARAAGGCKRPRP       AEAGGA+GALRAGRDVDGGGEGD  A D G SSVDFW+MSAA         EG G+HAP  REGQ RRD GRERED EG  +EGDDD AVPLH+ V PRE   +QICEGQGKRC  +            DARM AGREG DPAGVKEGR +   GRAG EERLG S   AA XXXXXXXXX  GIGDERFHGDGGGGAEA++ GHRPLFGRGGSSGVFG+VDPAVLAELPPDIQREIWMQQ
Sbjct:  380 AGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVNARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQQ-APRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAAAALEPSSSEEVPRRGGTANLSSSA-WYPRATDAGRGRRCGVDEAGRARPTGNALGFPKATAAVAVEEEARAAGGCKRPRPPEEDA--AEAGGADGALRAGRDVDGGGEGDRAATDGGSSSVDFWEMSAAXXXXXXXXXEGGGDHAPALREGQYRRDRGREREDDEGYRKEGDDD-AVPLHV-VAPREINTAQICEGQGKRCREEEAAAAAAAPRSVDARM-AGREG-DPAGVKEGRHDTVVGRAGLEERLGLSPATAAXXXXXXXXXXXDGIGDERFHGDGGGGAEASS-GHRPLFGRGGSSGVFGEVDPAVLAELPPDIQREIWMQQ 834
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A6H5K6B1_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B1_9PHAE)

HSP 1 Score: 552 bits (1422), Expect = 7.920e-190
Identity = 357/501 (71.26%), Postives = 376/501 (75.05%), Query Frame = 1 
Query:    1 SGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQ--------------------------------APRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAGVALEPTSSEGVTRRGGTANPSSSSTWCPRATDEGRDGRRRG---------TGNALGFPKATAAVDVEEARAAGGCKRPRPXXXXXXXAEAGGAEGALRAGRDVDGGGEGD--AADDGRSSVDFWKMSAAGDERLRGGREGDGEHAPVPREGQCRRDLGREREDGEGRPEEGDDDNAVPLHLLVTPRESKASQICEGQGKRC------------------SVDDARMVAGREGRDPAGVKEGRDNGFGGRAGPEERLGSSAAAXXXXXXXXX--AQGIGDERFHGDGGGGAEATNNGHRPLFGRGGSSGVFGDVDPAVLAELPPDIQREIWMQQ 1314
            +GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGK KLTSFSEIERWLSELSKEL+SRLVEQQEGEGQTPSKLTVSFAALQQ+                                APRLTMLGVSAHGFADSRKDTRSIQSFFGAAPA VALE +SSE V RRGG ANPSSS+ W  RATDEGR GRRRG         TGNALGFPK TAA  +EEARAAGG KRPRP       AEAG  +G LRAGR+VD G E D  A DDGRSSVDFW MSAA DER R   EGD  +AP PR+GQ RRD GRERED EG+ +EGDDD AVPLH+ VTPRE   SQIC+GQGKR                   SVD ARMV GREG D AGV+EGR +  GGRAG EERLGSSAA  XXXXXXXX  A GIGDERFHGDGGGG +  N+ HRPLFGRGGSSGVFGD+DPAVLAELPPDIQREIWMQQ
Sbjct:  120 AGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKAKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQQKGRSKGVSRCCRMVKPELRPVVEACMKMVRAYSAPRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAAVALESSSSEEVPRRGGIANPSSSA-WYRRATDEGR-GRRRGVDEAARARPTGNALGFPKRTAAA-MEEARAAGGYKRPRPPEDEA--AEAG-RDGTLRAGRNVDSGRESDRAATDDGRSSVDFWAMSAAEDERRREEGEGDEGYAPAPRDGQYRRDRGREREDDEGQRKEGDDD-AVPLHV-VTPREINTSQICQGQGKRYREXXXXXXXXXXXXAEPRSVD-ARMV-GREG-DQAGVQEGRHDTVGGRAGLEERLGSSAATAXXXXXXXXXXADGIGDERFHGDGGGGVD-VNSRHRPLFGRGGSSGVFGDIDPAVLAELPPDIQREIWMQQ 608
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A3P8ZR68_ESOLU (Polymerase (DNA directed), eta n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8ZR68_ESOLU)

HSP 1 Score: 74.3 bits (181), Expect = 1.640e-10
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAP 312
            GE+     A+L++  GD+ G   ++    I  +PVK R  PKS+GCSK FPGKT L +  +++ WL +L+ EL  RL + +E  G+   +LTV    L  + P
Sbjct:  274 GELTRFSQAQLEQHFGDKTGQWLYDLCRGIDFEPVKPRQLPKSIGCSKNFPGKTSLVTRDQVQHWLYQLALELQERLTKDREMNGRVAKQLTVGIRQLGDKKP 376
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A3Q3BKQ6_KRYMA (DNA polymerase eta n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3BKQ6_KRYMA)

HSP 1 Score: 73.9 bits (180), Expect = 2.270e-10
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAAL 297
            G++     AEL    GD+ G   ++    I  +PVK R  PKS+GCSKTFPGKT LT+  +++ WL +L+ EL  RL + +E  G+    LTV    L
Sbjct:  284 GDLTRFSQAELGHHFGDKTGPWLYDLCRGIEFEPVKPRQLPKSIGCSKTFPGKTALTTTEQVQYWLQQLALELEERLTKDREANGRVAKLLTVGVRQL 381
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A8B8E507_CRAVI (DNA polymerase eta-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8E507_CRAVI)

HSP 1 Score: 73.6 bits (179), Expect = 3.060e-10
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAP 312
            GE+       LQ   GD+ G   ++    I  +PV AR  PKS+GCSK FPGKT L +  ++  WL ELSKE+  RL++ +E   +    +TVS   +   AP
Sbjct:  266 GELCQFELTTLQLKFGDKTGAWLYDVCRGIEHEPVSARQLPKSIGCSKNFPGKTCLNTKEKVRFWLQELSKEVAERLIKDRETNSRVAKSMTVSVRYMSNPAP 368
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A060X4K1_ONCMY (Uncharacterized protein n=6 Tax=Salmonidae TaxID=8015 RepID=A0A060X4K1_ONCMY)

HSP 1 Score: 72.8 bits (177), Expect = 5.000e-10
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAAL 297
            GE+     A+L +  GD+ G   ++    I  D VK R  PKS+GCSKTFPGKT LT+   ++ WL +L+ EL  RL + +E  G+   +LTV    L
Sbjct:  280 GELTRFSQAQLGQHFGDKTGQWLYDLCRGIDFDAVKPRQLPKSIGCSKTFPGKTSLTTRERVQHWLYQLALELEERLTKDRELNGRVAKQLTVGVRQL 377
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: UPI001471B2D8 (DNA polymerase eta n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471B2D8)

HSP 1 Score: 72.8 bits (177), Expect = 5.190e-10
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAP 312
            GE+     A+L +  G++ G   ++    I  +PVK R  PKS+GCSKTFPGKT LTS  +I+ WL +L+ EL  RL + +E   +T   LTV    L  + P
Sbjct:  284 GELMRFSQAQLGQHFGEKIGQWLYDLCRGIEFEPVKPRQLPKSIGCSKTFPGKTSLTSKDKIQYWLHQLALELEERLNKDREANSRTAKLLTVGIRQLGDKRP 386
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A667ZAQ0_9TELE (DNA polymerase eta n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZAQ0_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 5.500e-10
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAAL 297
            GE+     A+L++  G++ G   ++    I  +PVK R  PKS+GCSK FPGKT L +  +++ WL +L++EL  RL++ +E  G+    LTV    L
Sbjct:  284 GELTCYSQAQLEQHFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKNFPGKTSLATKEQVQHWLYQLAQELEERLIKDREMNGRVAKLLTVGVRQL 381
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A3Q0QZE3_AMPCI (Polymerase (DNA directed), eta n=2 Tax=Heroini TaxID=318529 RepID=A0A3Q0QZE3_AMPCI)

HSP 1 Score: 72.4 bits (176), Expect = 6.810e-10
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAP 312
            G++     A+L++  GD+ G   ++    I  +PVK R  PKS+GCSK FPGKT L +  +++ WL +LS EL  RL + +E  G+    LTV    L  + P
Sbjct:  274 GDLTRFSQAQLEQHFGDKTGQWLYDLCRGIDFEPVKPRQLPKSIGCSKNFPGKTSLATKEQVQYWLHQLSLELEERLTKDREVNGRVAKLLTVGVRQLGDKRP 376
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BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Match: A0A2I4AR82_9TELE (DNA polymerase eta n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4AR82_9TELE)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-9
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    4 GEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQQQAP 312
            G++     AEL    G++ G   ++    I  +PVK R  PKS+GCSKTFPGKT LT+  +++ WL +L+ EL  RL + ++  G+    LTV    L  + P
Sbjct:  289 GDLTRFSQAELGNHFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKTFPGKTSLTTKEQVQYWLQQLALELEERLTKDRDVNGRVAKLLTVGVRHLGDKRP 391
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16055.4145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT49_ECTSI7.700e-20178.02Translesion synthesis DNA polymerase eta splice va... [more]
A0A6H5K6B1_9PHAE7.920e-19071.26UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A3P8ZR68_ESOLU1.640e-1037.86Polymerase (DNA directed), eta n=3 Tax=Esox lucius... [more]
A0A3Q3BKQ6_KRYMA2.270e-1040.82DNA polymerase eta n=1 Tax=Kryptolebias marmoratus... [more]
A0A8B8E507_CRAVI3.060e-1038.83DNA polymerase eta-like n=2 Tax=Crassostrea virgin... [more]
A0A060X4K1_ONCMY5.000e-1040.82Uncharacterized protein n=6 Tax=Salmonidae TaxID=8... [more]
UPI001471B2D85.190e-1040.78DNA polymerase eta n=1 Tax=Thalassophryne amazonic... [more]
A0A667ZAQ0_9TELE5.500e-1037.76DNA polymerase eta n=1 Tax=Myripristis murdjan Tax... [more]
A0A3Q0QZE3_AMPCI6.810e-1037.86Polymerase (DNA directed), eta n=2 Tax=Heroini Tax... [more]
A0A2I4AR82_9TELE1.640e-937.86DNA polymerase eta n=1 Tax=Austrofundulus limnaeus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16055contigE-fasciculatus_F_contig16055:6..2416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score596.7
Seed ortholog evalue9e-168
Seed eggNOG ortholog2880.D7FT49
Preferred namePOLH
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontranslesion synthesis DNA polymerase eta splice variant
Ec32 orthologEc-19_003590.3
Exons3
Model size1314
Cds size1314
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16055.4145.1prot_E-fasciculatus_F_contig16055.4145.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16055 6..2416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928073.580461-CDS-E-fasciculatus_F_contig16055:5..10161622928073.580461-CDS-E-fasciculatus_F_contig16055:5..1016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 6..1016 -
1695995812.2654412-CDS-E-fasciculatus_F_contig16055:5..10161695995812.2654412-CDS-E-fasciculatus_F_contig16055:5..1016Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 6..1016 -
1622928073.5922346-CDS-E-fasciculatus_F_contig16055:1842..19721622928073.5922346-CDS-E-fasciculatus_F_contig16055:1842..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 1843..1972 -
1695995812.2837467-CDS-E-fasciculatus_F_contig16055:1842..19721695995812.2837467-CDS-E-fasciculatus_F_contig16055:1842..1972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 1843..1972 -
1622928073.60756-CDS-E-fasciculatus_F_contig16055:2243..24161622928073.60756-CDS-E-fasciculatus_F_contig16055:2243..2416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 2244..2416 -
1695995812.2971144-CDS-E-fasciculatus_F_contig16055:2243..24161695995812.2971144-CDS-E-fasciculatus_F_contig16055:2243..2416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16055 2244..2416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16055.4145.1

>prot_E-fasciculatus_F_contig16055.4145.1 ID=prot_E-fasciculatus_F_contig16055.4145.1|Name=mRNA_E-fasciculatus_F_contig16055.4145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=438bp
SGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKT
FPGKTKLTSFSEIERWLSELSKELVSRLVEQQEGEGQTPSKLTVSFAALQ
QQAPRLTMLGVSAHGFADSRKDTRSIQSFFGAAPAGVALEPTSSEGVTRR
GGTANPSSSSTWCPRATDEGRDGRRRGTGNALGFPKATAAVDVEEARAAG
GCKRPRPPPEDDDAAEAGGAEGALRAGRDVDGGGEGDAADDGRSSVDFWK
MSAAGDERLRGGREGDGEHAPVPREGQCRRDLGREREDGEGRPEEGDDDN
AVPLHLLVTPRESKASQICEGQGKRCSVDDARMVAGREGRDPAGVKEGRD
NGFGGRAGPEERLGSSAAAAAAADAADAAQGIGDERFHGDGGGGAEATNN
GHRPLFGRGGSSGVFGDVDPAVLAELPPDIQREIWMQQ
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mRNA from alignment at E-fasciculatus_F_contig16055:6..2416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16055.4145.1 ID=mRNA_E-fasciculatus_F_contig16055.4145.1|Name=mRNA_E-fasciculatus_F_contig16055.4145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2411bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16055:6..2416- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGAGAAGTGGCCGCCGTCGGTGCTGCCGAGCTTCAGCGAGTCCTGGG
GGACGAGGAGGGCTGGAGGGCGTGGGAGAAGTCGAACGCTATCTGCAGGG
ACCCCGTAAAAGCGCGGTCGGCCCCCAAGAGCGTCGGCTGCTCGAAGACA
TTTCCTGGGAAGACGAAGCTGACGTGAGGCAATGGCCGTTTCGAGGCCCA
TACTACCGATCGACTGATCGTCAAACCAAGTGTGTAGAGCTTGAAACACT
TTGCTGCTGCTGACCGAGAACAAAACAAGTCTTCTTGCGTCCGGTGATCA
AAACCGGCTGATGTTTGGGTCTCCACACATCAGTTCGGTGGTAGAGTTTT
GTTTTTTTTTTTACACAAGGAATCCATCCCTATTCACAGATAAATCCCTA
TTCACAGATAAATATATATATATTTTTATGATATGTGCCACCAGATCTTT
CTCCGAGATCGAGCGGTGGCTGTCGGAGCTATCGAAGGAGCTGGTCTCGC
GGCTCGTCGAGCAGCAGGAGGGTGAGGGGCAAACGCCCAGCAAGCTTACC
GTCAGCTTTGCCGCACTTCAGCAGGTATGTGGTGCCCCTCGTGCATAACG
CACCCAGGGGACGAACATCCCCTGACCATACAGCAACGGTCCCGGTATAA
TGGCGGGGCAATCCTGCCGATTTCACCGGCATTATAGCAGGCGACCGGCA
TTATTCAGGGTATGAACCAACTTGAACATTCCGTTTGTGCCAATAAACAC
TGTGGGAAAAACAGAGGAGCTTGAGGGTGCTTTTGCGTGCGGGTCCAGTT
CTGGATTTTCCCAGCACGCTCGATCCGGCTCTTGTCGCTATCCTACGGTT
TTCAAACATCCCAAACGACCCTCTCTTCCTCTCTAGCCGTGTAGCTACGC
ATTGGAGGTAGAAAAGATTGGTGCCCGTTTACAGTCGCGCCACGCTTTTA
CCCTCCCACCACATGCTGCTGAATGTTGCATTTCTGGCGTCCGACCTTCT
TACGTCCCTCGGGACTCTCTGCTCCGCTTGCCCGCCTGAACAGAAGGGAC
GCCCAAAAGGAGTCTCGCGCTGCTGCCGCATGGTGAAGCCGGAGCTTCGG
CCTGTTGTTGAGGCTTGCATGAAGATGGTCAGAGCCTACTCAGTCGAGGC
GAGTCGGGTTTTTAACACGATTTGACTTCGGGGTCGGGCGATGGGTGGGT
GAATGGGTGACGGGGACCGGGGGGGGGGGGCTACTGCCCAGGCTTTGAGC
AATCCTCGCAGCAGTGTACACTACATGTCCGAGGGTCTATCGTCGAGTCA
AACGCTTGTTTCTTTTCCCCTTTTCAATTTCCCCACATCCTGTCGATGGT
CGCTGAACTAGTGCTACTACGTTCGGCGATACCCTTTTTAATGGTGAAAG
CAGGCCCCAAGACTCACGATGCTTGGCGTTTCCGCCCACGGCTTCGCGGA
CTCCCGCAAGGACACCCGGAGCATCCAGTCCTTCTTCGGCGCCGCCCCAG
CCGGCGTGGCTCTCGAGCCCACCTCCTCAGAAGGAGTTACACGTCGCGGG
GGTACCGCAAATCCATCCTCATCATCGACTTGGTGCCCTCGTGCGACGGA
TGAAGGCAGAGACGGGCGACGACGCGGGACGGGCAACGCCTTGGGTTTTC
CTAAAGCGACGGCGGCGGTAGATGTTGAGGAGGCTCGGGCAGCGGGGGGT
TGTAAACGGCCACGACCGCCGCCGGAGGATGATGATGCCGCCGAGGCCGG
GGGAGCAGAGGGCGCTTTGCGTGCCGGACGGGATGTAGACGGTGGTGGTG
AAGGCGACGCCGCCGATGATGGAAGGTCCAGCGTAGACTTCTGGAAAATG
TCGGCCGCCGGGGACGAAAGACTAAGAGGGGGGAGGGAAGGCGACGGGGA
GCATGCGCCGGTACCACGCGAGGGGCAGTGCCGGCGAGATCTAGGCCGGG
AGAGGGAGGACGGCGAGGGACGGCCGGAGGAGGGCGATGATGACAACGCT
GTTCCGTTACACCTCCTCGTCACACCTCGGGAGAGCAAGGCCTCGCAGAT
CTGCGAGGGGCAAGGAAAGCGCTGCTCCGTCGATGATGCCAGGATGGTGG
CTGGAAGAGAAGGAAGAGACCCGGCGGGGGTGAAAGAAGGCCGGGACAAC
GGGTTCGGCGGGCGAGCGGGGCCGGAGGAACGGTTGGGGTCGTCCGCCGC
CGCCGCCGCCGCCGCCGATGCTGCCGATGCCGCGCAGGGGATCGGCGACG
AGCGCTTTCACGGGGATGGTGGTGGCGGCGCGGAAGCCACCAACAACGGA
CATCGCCCGTTGTTCGGCAGGGGAGGGTCTTCGGGCGTTTTTGGAGACGT
GGACCCGGCAGTTCTGGCGGAGCTTCCTCCGGACATCCAGAGGGAGATCT
GGATGCAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16055:6..2416-

>mRNA_E-fasciculatus_F_contig16055.4145.1 ID=mRNA_E-fasciculatus_F_contig16055.4145.1|Name=mRNA_E-fasciculatus_F_contig16055.4145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2628bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16055:6..2416- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGGAGAAGTGGCCGCCGTCGGTGCTGCCGAGCTTCAGCGAGTCCTGGG
GGACGAGGAGGGCTGGAGGGCGTGGGAGAAGTCGAACGCTATCTGCAGGG
ACCCCGTAAAAGCGCGGTCGGCCCCCAAGAGCGTCGGCTGCTCGAAGACA
TTTCCTGGGAAGACGAAGCTGACTCAGGAGAAGTGGCCGCCGTCGGTGCT
GCCGAGCTTCAGCGAGTCCTGGGGGACGAGGAGGGCTGGAGGGCGTGGGA
GAAGTCGAACGCTATCTGCAGGGACCCCGTAAAAGCGCGGTCGGCCCCCA
AGAGCGTCGGCTGCTCGAAGACATTTCCTGGGAAGACGAAGCTGACATCT
TTCTCCGAGATCGAGCGGTGGCTGTCGGAGCTATCGAAGGAGCTGGTCTC
GCGGCTCGTCGAGCAGCAGGAGGGTGAGGGGCAAACGCCCAGCAAGCTTA
CCGTCAGCTTTGCCGCACTTCAGCAGATCTTTCTCCGAGATCGAGCGGTG
GCTGTCGGAGCTATCGAAGGAGCTGGTCTCGCGGCTCGTCGAGCAGCAGG
AGGGTGAGGGGCAAACGCCCAGCAAGCTTACCGTCAGCTTTGCCGCACTT
CAGCAGCAGGCCCCAAGACTCACGATGCTTGGCGTTTCCGCCCACGGCTT
CGCGGACTCCCGCAAGGACACCCGGAGCATCCAGTCCTTCTTCGGCGCCG
CCCCAGCCGGCGTGGCTCTCGAGCCCACCTCCTCAGAAGGAGTTACACGT
CGCGGGGGTACCGCAAATCCATCCTCATCATCGACTTGGTGCCCTCGTGC
GACGGATGAAGGCAGAGACGGGCGACGACGCGGGACGGGCAACGCCTTGG
GTTTTCCTAAAGCGACGGCGGCGGTAGATGTTGAGGAGGCTCGGGCAGCG
GGGGGTTGTAAACGGCCACGACCGCCGCCGGAGGATGATGATGCCGCCGA
GGCCGGGGGAGCAGAGGGCGCTTTGCGTGCCGGACGGGATGTAGACGGTG
GTGGTGAAGGCGACGCCGCCGATGATGGAAGGTCCAGCGTAGACTTCTGG
AAAATGTCGGCCGCCGGGGACGAAAGACTAAGAGGGGGGAGGGAAGGCGA
CGGGGAGCATGCGCCGGTACCACGCGAGGGGCAGTGCCGGCGAGATCTAG
GCCGGGAGAGGGAGGACGGCGAGGGACGGCCGGAGGAGGGCGATGATGAC
AACGCTGTTCCGTTACACCTCCTCGTCACACCTCGGGAGAGCAAGGCCTC
GCAGATCTGCGAGGGGCAAGGAAAGCGCTGCTCCGTCGATGATGCCAGGA
TGGTGGCTGGAAGAGAAGGAAGAGACCCGGCGGGGGTGAAAGAAGGCCGG
GACAACGGGTTCGGCGGGCGAGCGGGGCCGGAGGAACGGTTGGGGTCGTC
CGCCGCCGCCGCCGCCGCCGCCGATGCTGCCGATGCCGCGCAGGGGATCG
GCGACGAGCGCTTTCACGGGGATGGTGGTGGCGGCGCGGAAGCCACCAAC
AACGGACATCGCCCGTTGTTCGGCAGGGGAGGGTCTTCGGGCGTTTTTGG
AGACGTGGACCCGGCAGTTCTGGCGGAGCTTCCTCCGGACATCCAGAGGG
AGATCTGGATGCAGCAGCAGGCCCCAAGACTCACGATGCTTGGCGTTTCC
GCCCACGGCTTCGCGGACTCCCGCAAGGACACCCGGAGCATCCAGTCCTT
CTTCGGCGCCGCCCCAGCCGGCGTGGCTCTCGAGCCCACCTCCTCAGAAG
GAGTTACACGTCGCGGGGGTACCGCAAATCCATCCTCATCATCGACTTGG
TGCCCTCGTGCGACGGATGAAGGCAGAGACGGGCGACGACGCGGGACGGG
CAACGCCTTGGGTTTTCCTAAAGCGACGGCGGCGGTAGATGTTGAGGAGG
CTCGGGCAGCGGGGGGTTGTAAACGGCCACGACCGCCGCCGGAGGATGAT
GATGCCGCCGAGGCCGGGGGAGCAGAGGGCGCTTTGCGTGCCGGACGGGA
TGTAGACGGTGGTGGTGAAGGCGACGCCGCCGATGATGGAAGGTCCAGCG
TAGACTTCTGGAAAATGTCGGCCGCCGGGGACGAAAGACTAAGAGGGGGG
AGGGAAGGCGACGGGGAGCATGCGCCGGTACCACGCGAGGGGCAGTGCCG
GCGAGATCTAGGCCGGGAGAGGGAGGACGGCGAGGGACGGCCGGAGGAGG
GCGATGATGACAACGCTGTTCCGTTACACCTCCTCGTCACACCTCGGGAG
AGCAAGGCCTCGCAGATCTGCGAGGGGCAAGGAAAGCGCTGCTCCGTCGA
TGATGCCAGGATGGTGGCTGGAAGAGAAGGAAGAGACCCGGCGGGGGTGA
AAGAAGGCCGGGACAACGGGTTCGGCGGGCGAGCGGGGCCGGAGGAACGG
TTGGGGTCGTCCGCCGCCGCCGCCGCCGCCGCCGATGCTGCCGATGCCGC
GCAGGGGATCGGCGACGAGCGCTTTCACGGGGATGGTGGTGGCGGCGCGG
AAGCCACCAACAACGGACATCGCCCGTTGTTCGGCAGGGGAGGGTCTTCG
GGCGTTTTTGGAGACGTGGACCCGGCAGTTCTGGCGGAGCTTCCTCCGGA
CATCCAGAGGGAGATCTGGATGCAGCAG
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