mRNA_E-fasciculatus_F_contig15994.4102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15994.4102.1
Unique NamemRNA_E-fasciculatus_F_contig15994.4102.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15994.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15994contigE-fasciculatus_F_contig15994:2119..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15994.4102.1prot_E-fasciculatus_F_contig15994.4102.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15994 2203..2517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.343223-UTR-E-fasciculatus_F_contig15994:2118..22021622928066.343223-UTR-E-fasciculatus_F_contig15994:2118..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15994 2119..2202 +
1695995809.1833258-UTR-E-fasciculatus_F_contig15994:2118..22021695995809.1833258-UTR-E-fasciculatus_F_contig15994:2118..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15994 2119..2202 +
1622928066.366818-UTR-E-fasciculatus_F_contig15994:2517..25401622928066.366818-UTR-E-fasciculatus_F_contig15994:2517..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15994 2518..2540 +
1695995809.2053664-UTR-E-fasciculatus_F_contig15994:2517..25401695995809.2053664-UTR-E-fasciculatus_F_contig15994:2517..2540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15994 2518..2540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928066.3556244-CDS-E-fasciculatus_F_contig15994:2202..25171622928066.3556244-CDS-E-fasciculatus_F_contig15994:2202..2517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15994 2203..2517 +
1695995809.193117-CDS-E-fasciculatus_F_contig15994:2202..25171695995809.193117-CDS-E-fasciculatus_F_contig15994:2202..2517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15994 2203..2517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15994.4102.1

>prot_E-fasciculatus_F_contig15994.4102.1 ID=prot_E-fasciculatus_F_contig15994.4102.1|Name=mRNA_E-fasciculatus_F_contig15994.4102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MDQPYLLLDKYHEKNTNSLLPHARETCRCASSESANKGDESPAFLLRCAT
PSRMIATRRETDTCPSSPKCTPQYATNLYKRSALGDGPHVQNVTIPPVGT
CHTN*
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mRNA from alignment at E-fasciculatus_F_contig15994:2119..2540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15994.4102.1 ID=mRNA_E-fasciculatus_F_contig15994.4102.1|Name=mRNA_E-fasciculatus_F_contig15994.4102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15994:2119..2540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGAGAGTGCACAGCTGAAGCTGTATATTGTGTTGTGGCAAGATTTGAC
GGCGAGGAACGATGCACATACATACGGAGATCGGATGGATCAACCCTACC
TACTCTTGGACAAATACCATGAAAAAAACACGAATAGTCTACTCCCACAT
GCACGGGAGACATGCAGGTGCGCTTCAAGCGAGTCTGCAAACAAGGGGGA
CGAGAGTCCCGCTTTCTTGTTACGATGCGCCACACCATCCCGGATGATTG
CCACCAGACGAGAAACCGACACGTGTCCATCCAGTCCAAAATGCACTCCC
CAATATGCAACAAACCTATACAAACGGTCTGCTCTTGGAGACGGCCCACA
TGTACAAAATGTAACCATTCCTCCGGTCGGCACATGTCATACAAACTAGA
ACTGGAGAGTGCATGAGCTACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15994:2119..2540+

>mRNA_E-fasciculatus_F_contig15994.4102.1 ID=mRNA_E-fasciculatus_F_contig15994.4102.1|Name=mRNA_E-fasciculatus_F_contig15994.4102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15994:2119..2540+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATCAACCCTACCTACTCTTGGACAAATACCATGAAAAAAACACGAA
TAGTCTACTCCCACATGCACGGGAGACATGCAGGTGCGCTTCAAGCGAGT
CTGCAAACAAGGGGGACGAGAGTCCCGCTTTCTTGTTACGATGCGCCACA
CCATCCCGGATGATTGCCACCAGACGAGAAACCGACACGTGTCCATCCAG
TCCAAAATGCACTCCCCAATATGCAACAAACCTATACAAACGGTCTGCTC
TTGGAGACGGCCCACATGTACAAAATGTAACCATTCCTCCGGTCGGCACA
TGTCATACAAACTAGATGGATCAACCCTACCTACTCTTGGACAAATACCA
TGAAAAAAACACGAATAGTCTACTCCCACATGCACGGGAGACATGCAGGT
GCGCTTCAAGCGAGTCTGCAAACAAGGGGGACGAGAGTCCCGCTTTCTTG
TTACGATGCGCCACACCATCCCGGATGATTGCCACCAGACGAGAAACCGA
CACGTGTCCATCCAGTCCAAAATGCACTCCCCAATATGCAACAAACCTAT
ACAAACGGTCTGCTCTTGGAGACGGCCCACATGTACAAAATGTAACCATT
CCTCCGGTCGGCACATGTCATACAAACTAG
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