mRNA_E-fasciculatus_F_contig15961.4083.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15961.4083.1
Unique NamemRNA_E-fasciculatus_F_contig15961.4083.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: A0A6H5KXV9_9PHAE (SUI1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV9_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 6.130e-45
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 1
Query:   13 GVEGISLEDMR---EEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE 285
            G+EG+SLED     EE+EEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTL+
Sbjct:  143 GLEGVSLEDAGGEGEEQEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLK 236          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: D8LJR1_ECTSI (SUI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR1_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 7.180e-45
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1
Query:    4 EGLGVEGISLEDMR---EEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE 285
            EGLG++G+SLED     EE+E+EAVEVVSERLYAAFLNGLKK LKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE
Sbjct:  335 EGLGLDGVSLEDPMGEGEEQEQEAVEVVSERLYAAFLNGLKKSLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE 431          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: A0A7S3YEP9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEP9_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 4.490e-17
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   88 LYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVT 279
            L   F   +K  LKDAQLPML STF+SSVLLP+RPPGT ++VKKT ++K   FL  M+ +G +T
Sbjct:    8 LELTFFRAVKGALKDAQLPMLASTFFSSVLLPARPPGTEVNVKKTRWKKFGAFLAHMQAQGALT 71          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: L8HES0_ACACA (Eukaryotic translation initiation factor SUI1 family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HES0_ACACA)

HSP 1 Score: 72.8 bits (177), Expect = 6.210e-13
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   55 EEEAVEVVSERLYAAFLNGLKKG----LKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLV 276
            +E+ V   +E L+  FL  LK G    ++D  LPML + FYS  +LP+RP GT++++K+TSY+K+  FL E  G+GL+
Sbjct:  230 DEDEVRAQNELLHHCFLAALKGGGERKVRDKDLPMLANVFYSDYMLPARPEGTTLEIKRTSYKKLHTFLAEAAGKGLI 307          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: UPI00201FB243 (eukaryotic translation initiation factor 2D-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FB243)

HSP 1 Score: 72.4 bits (176), Expect = 8.510e-13
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   46 EEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLV 276
            EEE  ++VEV+ ERL    L  LK  +K + LP+L S F+ + + P  P G SIDVKK+S++K+S FLQ M+ +GL+
Sbjct:  262 EEEARDSVEVMDERLKTCCLCALKSKVKKSDLPLLTSAFFKNYMQPFCPAGQSIDVKKSSFKKLSKFLQHMQKQGLL 338          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: UPI001EE56D00 (eukaryotic translation initiation factor 2D-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE56D00)

HSP 1 Score: 72.0 bits (175), Expect = 1.150e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   46 EEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLV 276
            EEE  ++VEV+ ERL    L  LK  +K + LP+L S F+ + + P  P G S+DVKK+S++K+S FLQ M+ +GL+
Sbjct:  213 EEESRDSVEVMDERLRTCCLCALKSKVKKSDLPLLTSAFFKNFMQPFCPAGQSLDVKKSSFKKLSKFLQHMQKQGLL 289          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: K3X274_GLOUD (SUI1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X274_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 1.160e-12
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   25 ISLEDMREEEEEEAVEVV-----SERLYA-AFLNGLKKG-LKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLV 276
            ++LED  +E++EEA E V      ++LY    L  LK G +K+ +LPML STFY+SVLLPSR  G S+++K +S++K S FL++M  RGL+
Sbjct:  239 VTLED--KEQDEEATETVISKEDMDQLYIQTLLQALKAGKIKEKELPMLASTFYASVLLPSRAAGVSLNIKLSSFKKSSVFLKQMAARGLL 327          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: A0A7S2T987_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T987_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.320e-12
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   16 VEGISLEDMREE---EEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLV 276
            VEG+ + D + E   E + A   + E + + FL  L   +KDA LPM    FYS  +LP RP GT ID+K+++Y+K+S  +++ME RGLV
Sbjct:  248 VEGLDISDEKPEACGEAKTAGASMDELVDSCFLRALHLRVKDADLPMDCGAFYSGCMLPCRPKGTEIDIKQSTYKKVSKLMKKMEKRGLV 337          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: UPI001425A13D (eukaryotic translation initiation factor 2D-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A13D)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   31 LEDMREEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE 285
            +E++ EE  EE +E +   L   FL  LK  +K + LP+L STFY+  +    P   S+D+KK+SY+K+S FLQ M  RGLV ++
Sbjct:  256 VEEVEEESMEEKIEKMDNLLMQCFLFSLKTSVKKSNLPLLASTFYAQHIQKCCPANKSLDIKKSSYKKLSKFLQIMNDRGLVEIK 340          
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Match: A0A2R5GSR9_9STRA (Eukaryotic translation initiation factor 2D n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSR9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-12
Identity = 30/66 (45.45%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   88 LYAAFLNGLKKGLKDAQLPMLVSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE 285
            L + FL  LK+ +KD +LPMLVS FYS+V+LP RP G ++++K+T Y+K   F+  M  +G+++L+
Sbjct:  299 LESTFLQALKRHVKDRELPMLVSQFYSNVMLPCRPQGVTLNLKQTKYKKTGVFMHAMRDKGIISLK 364          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15961.4083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXV9_9PHAE6.130e-4590.43SUI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LJR1_ECTSI7.180e-4588.66SUI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YEP9_HETAK4.490e-1756.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8HES0_ACACA6.210e-1343.59Eukaryotic translation initiation factor SUI1 fami... [more]
UPI00201FB2438.510e-1346.75eukaryotic translation initiation factor 2D-like n... [more]
UPI001EE56D001.150e-1245.45eukaryotic translation initiation factor 2D-like n... [more]
K3X274_GLOUD1.160e-1247.25SUI1 domain-containing protein n=1 Tax=Globisporan... [more]
A0A7S2T987_9CHLO1.320e-1242.22Hypothetical protein (Fragment) n=2 Tax=Chloropico... [more]
UPI001425A13D1.590e-1242.35eukaryotic translation initiation factor 2D-like i... [more]
A0A2R5GSR9_9STRA1.590e-1245.45Eukaryotic translation initiation factor 2D n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15961contigE-fasciculatus_F_contig15961:2591..2875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D8LJR1
KEGG koko:K15027
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0046483,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0110017,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.formation of translation preinitiation complex
EggNOG OGsCOG2016@1,KOG2522@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.5090356-CDS-E-fasciculatus_F_contig15961:2590..28751622928064.5090356-CDS-E-fasciculatus_F_contig15961:2590..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15961 2591..2875 -
1695995808.3405106-CDS-E-fasciculatus_F_contig15961:2590..28751695995808.3405106-CDS-E-fasciculatus_F_contig15961:2590..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15961 2591..2875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15961.4083.1prot_E-fasciculatus_F_contig15961.4083.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15961 2591..2875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15961.4083.1

>prot_E-fasciculatus_F_contig15961.4083.1 ID=prot_E-fasciculatus_F_contig15961.4083.1|Name=mRNA_E-fasciculatus_F_contig15961.4083.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
GEGLGVEGISLEDMREEEEEEAVEVVSERLYAAFLNGLKKGLKDAQLPML
VSTFYSSVLLPSRPPGTSIDVKKTSYRKISNFLQEMEGRGLVTLE
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mRNA from alignment at E-fasciculatus_F_contig15961:2591..2875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15961.4083.1 ID=mRNA_E-fasciculatus_F_contig15961.4083.1|Name=mRNA_E-fasciculatus_F_contig15961.4083.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15961:2591..2875- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGAGGGGCTCGGGGTTGAAGGAATTTCGCTTGAGGACATGAGGGAGGA GGAGGAGGAGGAAGCGGTGGAAGTGGTCAGCGAGCGGCTGTACGCGGCGT TCCTGAACGGGCTGAAGAAGGGCCTCAAGGATGCGCAGCTGCCGATGCTG GTCAGCACGTTCTACTCGTCCGTGCTGCTGCCGTCTAGGCCACCGGGAAC CTCGATCGACGTCAAGAAGACCAGCTACCGGAAGATTTCCAACTTCTTGC AGGAGATGGAAGGGAGGGGGCTGGTCACCCTCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15961:2591..2875-

>mRNA_E-fasciculatus_F_contig15961.4083.1 ID=mRNA_E-fasciculatus_F_contig15961.4083.1|Name=mRNA_E-fasciculatus_F_contig15961.4083.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15961:2591..2875- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGAGGGGCTCGGGGTTGAAGGAATTTCGCTTGAGGACATGAGGGAGGA
GGAGGAGGAGGAAGCGGTGGAAGTGGTCAGCGAGCGGCTGTACGCGGCGT
TCCTGAACGGGCTGAAGAAGGGCCTCAAGGATGCGCAGCTGCCGATGCTG
GTCAGCACGTTCTACTCGTCCGTGCTGCTGCCGTCTAGGCCACCGGGAAC
CTCGATCGACGTCAAGAAGACCAGCTACCGGAAGATTTCCAACTTCTTGC
AGGAGATGGAAGGGAGGGGGCTGGTCACCCTCGAGGGAGAGGGGCTCGGG
GTTGAAGGAATTTCGCTTGAGGACATGAGGGAGGAGGAGGAGGAGGAAGC
GGTGGAAGTGGTCAGCGAGCGGCTGTACGCGGCGTTCCTGAACGGGCTGA
AGAAGGGCCTCAAGGATGCGCAGCTGCCGATGCTGGTCAGCACGTTCTAC
TCGTCCGTGCTGCTGCCGTCTAGGCCACCGGGAACCTCGATCGACGTCAA
GAAGACCAGCTACCGGAAGATTTCCAACTTCTTGCAGGAGATGGAAGGGA
GGGGGCTGGTCACCCTCGAG
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