mRNA_E-fasciculatus_F_contig15951.4077.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15951.4077.1
Unique NamemRNA_E-fasciculatus_F_contig15951.4077.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15951.4077.1 vs. uniprot
Match: A0A6H5L1B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B7_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 1.770e-135
Identity = 236/275 (85.82%), Postives = 242/275 (88.00%), Query Frame = 3 
Query:    3 IYAVDSTRLLRTLRCLGEVSRMSLSDPVLAVLSSGSGRLSFRDLYADGGGGLGQRTAMGVSAVAFAAVEGHLTNTXXXXXXXXXXXXXXXXXXXXXXXXGTTRPDRNGDGSTVLHCVNSSGTVFEASTSGAAWNAERIAPGGSEGGAVPAAAAAAFGGWHVCADLEASLLVLATRWGTISGWRLHPSGRRARGPIFCLGLGSSSPASPSPSSRPLTSMSLAAGGLILATSAEGAPPRLWDMRLARRRCGWGLAADGGGPSEGGGARAAGVRGTPA 827
            IYAVDSTRLLRTLRCL EVSRMSL DPVLAVLS GSGRLSFRDLYADGGGGLGQRTAMGVSA AFAAVEGHLTN XXXXXXXXXXXX            GT RPD NGDG+TVLHCVNS+GTVFEASTSGAAWN+E IAPGGSEGGA PAAAAA  G WHVCADLEASLLVLAT WG ISGWRL+PSGRRARGPIFC GLGSS  ASPSPSSRPLTSMSL AGGLILATSAEGAPPRLWDMRL RRRCGWGLAADGGGPS  GGARA+G+RGTPA
Sbjct:  282 IYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLSLGSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTNNXXXXXXXXXXXXT-----------GTIRPDYNGDGTTVLHCVNSTGTVFEASTSGAAWNSELIAPGGSEGGADPAAAAAG-GRWHVCADLEASLLVLATPWGAISGWRLNPSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAPPRLWDMRLTRRRCGWGLAADGGGPSGAGGARASGLRGTPA 544
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BLAST of mRNA_E-fasciculatus_F_contig15951.4077.1 vs. uniprot
Match: D7FPS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS2_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.660e-20
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:    3 IYAVDSTRLLRTLRCLGEVSRMSLSDPVLAVLSSGSGRLSFRDLYADGGGGLGQR 167
            IYAVDSTRLLRTLRC+ EVSRMSL DPVLAVLS GSGRLSFRDLYADGGGGLGQR
Sbjct:  278 IYAVDSTRLLRTLRCVSEVSRMSLFDPVLAVLSWGSGRLSFRDLYADGGGGLGQR 332
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15951.4077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1B7_9PHAE1.770e-13585.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS2_ECTSI6.660e-2092.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15951contigE-fasciculatus_F_contig15951:408..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size858
Cds size648
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15951.4077.1prot_E-fasciculatus_F_contig15951.4077.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15951 408..2674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.0457945-CDS-E-fasciculatus_F_contig15951:407..5711622928064.0457945-CDS-E-fasciculatus_F_contig15951:407..571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 408..571 +
1695995808.0684545-CDS-E-fasciculatus_F_contig15951:407..5711695995808.0684545-CDS-E-fasciculatus_F_contig15951:407..571Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 408..571 +
1622928064.061377-CDS-E-fasciculatus_F_contig15951:1051..13991622928064.061377-CDS-E-fasciculatus_F_contig15951:1051..1399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 1052..1399 +
1695995808.077576-CDS-E-fasciculatus_F_contig15951:1051..13991695995808.077576-CDS-E-fasciculatus_F_contig15951:1051..1399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 1052..1399 +
1622928064.0812092-CDS-E-fasciculatus_F_contig15951:2538..26741622928064.0812092-CDS-E-fasciculatus_F_contig15951:2538..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 2539..2674 +
1695995808.0869057-CDS-E-fasciculatus_F_contig15951:2538..26741695995808.0869057-CDS-E-fasciculatus_F_contig15951:2538..2674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15951 2539..2674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.0940611-UTR-E-fasciculatus_F_contig15951:2674..28831622928064.0940611-UTR-E-fasciculatus_F_contig15951:2674..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15951 2675..2883 +
1695995808.0968769-UTR-E-fasciculatus_F_contig15951:2674..28831695995808.0968769-UTR-E-fasciculatus_F_contig15951:2674..2883Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15951 2675..2883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15951.4077.1

>prot_E-fasciculatus_F_contig15951.4077.1 ID=prot_E-fasciculatus_F_contig15951.4077.1|Name=mRNA_E-fasciculatus_F_contig15951.4077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=216bp
GFTRWTRRGSCVPSGAWARCPACPSPTPSSPCSRRARAACRSGICTRTGA
VASDSVPRWAFPPSHSLPSKAISPTPTTITTTTAATTPAAAAAAAATATR
APPDPTATATAAPSSTASTRAAPSSRPRPAERRGTQNGSPRGVVRAERFR
RQPQQPLEDGTFAPTSRRPSWSLRRGGAQSPVGVYTPADAALAARSSASG
WDPPLRPPRPLPRAR*
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mRNA from alignment at E-fasciculatus_F_contig15951:408..2883+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15951.4077.1 ID=mRNA_E-fasciculatus_F_contig15951.4077.1|Name=mRNA_E-fasciculatus_F_contig15951.4077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2476bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15951:408..2883+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATTTACGCGGTGGACTCGACGAGGCTCTTGCGTACCCTCCGGTGCCTG
GGCGAGGTGTCCCGCATGTCCCTCTCCGACCCCGTCCTCGCCGTGCTCTC
GTCGGGCTCGGGCCGCCTGTCGTTCAGGGATCTGTACGCGGACGGGGGCG
GTGGCCTCGGACAGGTGAAGCGAAGTGAAATGAAGTGAAGTGAAGTGCGA
CCAAGCTAGCTGCGCGTGTCTTTGTGTTACGGTCTCCTCTCGAGCTTGTG
CTGCAAGTGCGGACCGTCGAGGCGAAAAAGCAACACGTTCGAGGCGGGAA
AACAACTTTTTTTTTTGCGTGTTGGTCAAGCAACTCTTGTCGGAGTGGCG
CCTGCCTGTGTTGTACGGTCTTTTGCCCGTTTTCCTATTCCATGCCCCTC
TCCGCGACCTGTGTTTATCGGAGTTCGGACGTGATTGTTTTGACTTTTGG
GCTTCAGGCTGTTTGGCTTCAACGATCGCAGCCTCTGCGTATACAGCAGC
ATAGCACAAACCTTATCAACAGCGTCGCGTAAACATGCCTCTCTTGCCCT
CCACGACGGCTCCCCTTGCACCCTCCGTTGCTTCCGGCACGACACGCCGA
AACCTCCTGCCCATGTACACCTGCATGTTGTGTTCATGTGGCAGCGTACC
GCGATGGGCGTTTCCGCCGTCGCATTCGCTGCCGTCGAAGGCCATCTCAC
CAACACCAACGACAATAACAACAACAACAGCAGCAACAACACCAGCAGCA
GCAGCAGCAGCAGCAGCAACAGCAACACGGGCACCACCCGACCCGACCGC
AACGGCGACGGCAGCACCGTCCTCCACTGCGTCAACTCGAGCGGCACCGT
CTTCGAGGCCTCGACCAGCGGAGCGGCGTGGAACGCAGAACGGATCGCCC
CGGGGGGTAGTGAGGGCGGAGCGGTTCCGGCGGCAGCCGCAGCAGCCTTT
GGAGGATGGCACGTTTGCGCCGACCTCGAGGCGTCCCTCCTGGTGAGATA
GAAACCTCGACACCATACATTTGTGTCGGGCTCTAAAGGCCTTTCTTTTT
CGGTTCAGCAGTAGTGGTTCTGGTACAACGCCGGTGAGATCCAGTCGACT
TCGTCAGCATTAAGCGAGCAACCGACATCATTCAGAGTATGAAACATGTT
GCATATTCCGCCTGTGCCAGACGATTTCACCGGCATTTTCCAGGGCAACC
AGCATTACTCGACCGGCATTCTACCGGGACCACTAATGCCGTGTTTTTTT
CTGCGGGCGCACAAATCGTTGGTTACCCAGACGATGAACCCTCCGCGGGG
GTACAGTTTGTAGCCTTTTCGTCTGTCTCGGGAGGAGAAGGGTTCCGCTG
TCTCCTTGTTAGCGCGCGTGGTCGAGGAATGCTTTAGGTCCCTATAGCAA
GCAAGCTTGCGTGCTGCTCTCTTTGGGTGTTGTCACATGATGAGGTGACA
GACGGGCGTCGGTCGTGTTCGGTGCGTTGTTTGCGGTGTGGGGAGTACGT
TTTTCGCGAGGGGGTGGATTGGAAATCTCCTGTATTTCGGTCCGTGGACT
TCGTGTATTGTTCTCGCAGAACGTTTTATGCAGTACGCGCACACACCGCG
TAGAGACGCCATGCATTTTCATTGGTCAGCAGGCCTGCGCGCTCGACGCA
AATAACGAAACACACACACACAAAGTTGCTGTCGGGGAAGCCCGCTGACT
AGAACGCGCGATCTTCATCCTTTTTGTCCCGCTGTTAAGACCGACCGACA
TTTTCGTTGCTCAGCTGGAAAGGGCGATCGATCGACGGATGCCATTTACT
AAATTATACACACTCGCACGTGCACGCACAGGATTCGGTCATCCAACCCC
TTGCGCCTCCACCTGTCGGTAAAACCCTTTGATTAGAAAGGGTGTTGGCA
CTTTTTTACCCGCCTTATTACAAACGAGACTGTGACGTATTTTCATTGTT
CAGCCGGTTCGCGCAGTCGATGCCATTAACCACACACACACAGCGCCCGA
AGAGACAGACCCCCTGCACGCCAACTCAGAGCCACATCTTGAGATCGCGT
ACGGCACACCCCCGGGTTCCCTGCACAGGATACAACAACGCACAACCATC
ATCCTTTCCCCTCTTCCTCTTCCTGTAGTAGGTCCTTGCGACGCGGTGGG
GCACAATCTCCGGTTGGCGTCTACACCCCAGCGGACGCCGCGCTCGCGGC
CCGATCTTCTGCCTCGGGCTGGGATCCTCCTCTCCGGCCTCCCCGTCCCC
TTCCTCGCGCCCGCTGACCTCCATGAGCCTGGCCGCCGGCGGTCTGATCC
TCGCCACCTCCGCCGAGGGCGCGCCCCCCCGGCTGTGGGACATGCGCCTG
GCCCGGCGGCGGTGTGGGTGGGGGCTTGCCGCGGACGGCGGTGGTCCTTC
CGAAGGAGGGGGGGCTCGTGCGGCCGGGGTGAGAGGCACCCCCGCGGGTG
GAGGGGGAGGGGGCTCAGCAGCATCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15951:408..2883+

>mRNA_E-fasciculatus_F_contig15951.4077.1 ID=mRNA_E-fasciculatus_F_contig15951.4077.1|Name=mRNA_E-fasciculatus_F_contig15951.4077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15951:408..2883+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATTTACGCGGTGGACTCGACGAGGCTCTTGCGTACCCTCCGGTGCCTG
GGCGAGGTGTCCCGCATGTCCCTCTCCGACCCCGTCCTCGCCGTGCTCTC
GTCGGGCTCGGGCCGCCTGTCGTTCAGGGATCTGTACGCGGACGGGGGCG
GTGGCCTCGGACAGGGATTTACGCGGTGGACTCGACGAGGCTCTTGCGTA
CCCTCCGGTGCCTGGGCGAGGTGTCCCGCATGTCCCTCTCCGACCCCGTC
CTCGCCGTGCTCTCGTCGGGCTCGGGCCGCCTGTCGTTCAGGGATCTGTA
CGCGGACGGGGGCGGTGGCCTCGGACAGCGTACCGCGATGGGCGTTTCCG
CCGTCGCATTCGCTGCCGTCGAAGGCCATCTCACCAACACCAACGACAAT
AACAACAACAACAGCAGCAACAACACCAGCAGCAGCAGCAGCAGCAGCAG
CAACAGCAACACGGGCACCACCCGACCCGACCGCAACGGCGACGGCAGCA
CCGTCCTCCACTGCGTCAACTCGAGCGGCACCGTCTTCGAGGCCTCGACC
AGCGGAGCGGCGTGGAACGCAGAACGGATCGCCCCGGGGGGTAGTGAGGG
CGGAGCGGTTCCGGCGGCAGCCGCAGCAGCCTTTGGAGGATGGCACGTTT
GCGCCGACCTCGAGGCGTCCCTCCTGCGTACCGCGATGGGCGTTTCCGCC
GTCGCATTCGCTGCCGTCGAAGGCCATCTCACCAACACCAACGACAATAA
CAACAACAACAGCAGCAACAACACCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAACACGGGCACCACCCGACCCGACCGCAACGGCGACGGCAGCACC
GTCCTCCACTGCGTCAACTCGAGCGGCACCGTCTTCGAGGCCTCGACCAG
CGGAGCGGCGTGGAACGCAGAACGGATCGCCCCGGGGGGTAGTGAGGGCG
GAGCGGTTCCGGCGGCAGCCGCAGCAGCCTTTGGAGGATGGCACGTTTGC
GCCGACCTCGAGGCGTCCCTCCTGGTCCTTGCGACGCGGTGGGGCACAAT
CTCCGGTTGGCGTCTACACCCCAGCGGACGCCGCGCTCGCGGCCCGATCT
TCTGCCTCGGGCTGGGATCCTCCTCTCCGGCCTCCCCGTCCCCTTCCTCG
CGCCCGCTGAGTCCTTGCGACGCGGTGGGGCACAATCTCCGGTTGGCGTC
TACACCCCAGCGGACGCCGCGCTCGCGGCCCGATCTTCTGCCTCGGGCTG
GGATCCTCCTCTCCGGCCTCCCCGTCCCCTTCCTCGCGCCCGCTGA
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