mRNA_E-fasciculatus_F_contig15909.4048.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15909.4048.1
Unique NamemRNA_E-fasciculatus_F_contig15909.4048.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.760e-26
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            IHSSVK+SEYVS+IH  A K DPRAEE FK+VQVFTAI DS+SHGANDVANAMG FAGIYIVYTT
Sbjct:  302 IHSSVKDSEYVSQIHDNAEKFDPRAEEAFKYVQVFTAICDSFSHGANDVANAMGPFAGIYIVYTT 366
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.620e-25
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            +HSSVKESEYVS+IH  A + DPRAEE FK+VQVFTAI DS+SHGANDVANAMG FA IYIVYTT
Sbjct:  303 VHSSVKESEYVSQIHDNAEQFDPRAEEAFKYVQVFTAICDSFSHGANDVANAMGPFASIYIVYTT 367
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.650e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            IHSSVK+S YVS+IH  A K DPRAEE FK+VQVFTAI DS+SHGANDVANAMG FA IY+VY+T
Sbjct:  246 IHSSVKDSGYVSQIHDNAEKFDPRAEEAFKYVQVFTAICDSFSHGANDVANAMGPFAAIYLVYST 310
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.760e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            I+SSVK+SEYV++IH  A K DPR EEVFK+VQ+FTAI DS+SHGANDVANAMG FA IY VYTT
Sbjct:  313 IYSSVKDSEYVNQIHDNAEKFDPRTEEVFKYVQIFTAICDSFSHGANDVANAMGPFASIYFVYTT 377
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.040e-22
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            +H++VK+++YV  IH  A +SDPR E+ FK+VQVFTAI DS+SHGANDVANAMG FA IYIVYTT
Sbjct:  303 VHATVKDNDYVDAIHENAERSDPRTEQAFKYVQVFTAICDSFSHGANDVANAMGPFASIYIVYTT 367
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A7S4F699_CHRCT (Phosphate transporter n=5 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F699_CHRCT)

HSP 1 Score: 88.2 bits (217), Expect = 5.520e-18
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            IH+S++E E V  +H  A K DP AE VF+++QVFTAI DS++HGANDVANAMG F  IY++Y T
Sbjct:  346 IHASIEEDEKVQALHDNAEKFDPMAEAVFRYIQVFTAICDSFAHGANDVANAMGPFMAIYVIYDT 410
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A7S4BSB8_CHRCT (Phosphate transporter n=7 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BSB8_CHRCT)

HSP 1 Score: 83.6 bits (205), Expect = 2.330e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVYTT 351
            +H +++E   V  +H  A K DP AE VF+++QVFTAI DS++HGANDVANAMG F  IY++Y T
Sbjct:  392 VHKAIQEDVEVQALHDNAEKFDPMAEAVFRYIQVFTAICDSFAHGANDVANAMGPFMAIYVIYDT 456
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A061QS79_9CHLO (Phosphate transporter (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QS79_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 7.050e-15
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVY 345
            +HS+++E + V+ IH  + K DP+ EE FK++QVFTAI DS+SHGANDVAN++G FA I+ +Y
Sbjct:  317 VHSAIEEDDAVNAIHEFSEKFDPKTEESFKYLQVFTAICDSFSHGANDVANSIGPFAAIWGIY 379
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A7S0F275_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F275_9CRYP)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-14
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  157 IHSSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVY 345
            +H   +  +    IH  A   DPRAEEVFK++QVFTA+ D+++HGANDVANAMG FA  YI++
Sbjct:   53 LHLITEIDDTTKNIHKNAEVFDPRAEEVFKYLQVFTAMCDAFAHGANDVANAMGPFAATYIIW 115
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Match: A0A6C0AZ07_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AZ07_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 2.340e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  163 SSVKESEYVSRIHGKA*KSDPRAEEVFKHVQVFTAIFDSYSHGANDVANAMGHFAGIYIVY 345
            SS+ +   VS +H KA K D R EE+FK++Q+FTA  D++SHGANDVANA+G FA IY++Y
Sbjct:  277 SSINDLITVSNLHDKADKFDLRIEEIFKYLQIFTAACDAFSHGANDVANAVGPFAAIYLIY 337
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15909.4048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNE7_9PHAE2.760e-2683.08Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI3.620e-2580.00Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE8.650e-2476.92Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI1.760e-2375.38Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI4.040e-2269.23Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A7S4F699_CHRCT5.520e-1860.00Phosphate transporter n=5 Tax=Chrysotila carterae ... [more]
A0A7S4BSB8_CHRCT2.330e-1655.38Phosphate transporter n=7 Tax=Chrysotila carterae ... [more]
A0A061QS79_9CHLO7.050e-1555.56Phosphate transporter (Fragment) n=2 Tax=Tetraselm... [more]
A0A7S0F275_9CRYP1.070e-1453.97Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A6C0AZ07_9ZZZZ2.340e-1457.38Uncharacterized protein n=1 Tax=viral metagenome T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15909contigE-fasciculatus_F_contig15909:2..1076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15909.4048.1prot_E-fasciculatus_F_contig15909.4048.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15909 34..1076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928057.8829045-UTR-E-fasciculatus_F_contig15909:1..331622928057.8829045-UTR-E-fasciculatus_F_contig15909:1..33Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15909 2..33 +
1695995806.7137907-UTR-E-fasciculatus_F_contig15909:1..331695995806.7137907-UTR-E-fasciculatus_F_contig15909:1..33Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15909 2..33 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928057.8941128-CDS-E-fasciculatus_F_contig15909:33..691622928057.8941128-CDS-E-fasciculatus_F_contig15909:33..69Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 34..69 +
1695995806.7235289-CDS-E-fasciculatus_F_contig15909:33..691695995806.7235289-CDS-E-fasciculatus_F_contig15909:33..69Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 34..69 +
1622928057.9061892-CDS-E-fasciculatus_F_contig15909:294..4811622928057.9061892-CDS-E-fasciculatus_F_contig15909:294..481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 295..481 +
1695995806.734641-CDS-E-fasciculatus_F_contig15909:294..4811695995806.734641-CDS-E-fasciculatus_F_contig15909:294..481Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 295..481 +
1622928057.9185083-CDS-E-fasciculatus_F_contig15909:978..10761622928057.9185083-CDS-E-fasciculatus_F_contig15909:978..1076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 979..1076 +
1695995806.7441306-CDS-E-fasciculatus_F_contig15909:978..10761695995806.7441306-CDS-E-fasciculatus_F_contig15909:978..1076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15909 979..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15909.4048.1

>prot_E-fasciculatus_F_contig15909.4048.1 ID=prot_E-fasciculatus_F_contig15909.4048.1|Name=mRNA_E-fasciculatus_F_contig15909.4048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MHIQSSRPTCVQVAAVEQKEKQTGRQTGVVGFVMNQMNQDIHPLERQGVG
VRQPDPRQGLEVRPPGGGGLQARAGVYGYLRLLLARSERRCQRDGTLRGH
LHRVHHG
back to top

mRNA from alignment at E-fasciculatus_F_contig15909:2..1076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15909.4048.1 ID=mRNA_E-fasciculatus_F_contig15909.4048.1|Name=mRNA_E-fasciculatus_F_contig15909.4048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1075bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15909:2..1076+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACCCAAACAAAGATAGATGCAACAACCCAATGCACATCCAATCTTCT
CGACCGACATGCGTCCAGGTAGTGACCGCCTGACTGAGTGCTCCCGTCAT
GCCCCAAGCACTACTTGTGGATATGATGGCTCAATTGACCACCCAATCCT
TCAATTTCGTTTCTGCGTGCGGATTCGAGGATGGATGTAGACAAGAACGG
AGTAGTAATAGTTCGATATCCCACCCAATCCTCAATGCACATTGTTTTGT
TTTTATTTCCGACCCTCATCCCTATCGTGAAAAAACACTCCAGGTTGCCG
CGGTAGAGCAGAAGGAGAAGCAGACCGGCAGGCAGACCGGCGTCGTCGGG
TTCGTGATGAACCAGATGAACCAGGACATACATCCACTCGAGCGTCAAGG
AGTCGGAGTACGTCAGCCGGATCCACGGCAAGGCCTAGAAGTCCGACCCC
CGGGCGGAGGAGGTCTTCAAGCACGTGCAGGTGAGAAATTCAGGAATTCG
AGTCGAGGGGACGGCGACCGACCGACCACCCAAGAAAAGAAGAGACAAGA
AGCCCCGTCTTACATACCATGGTTGAATCCCTCCATTAGGAAAGAAGCTG
CGTCTAGATGGGTGTGTCCCTGCCTTTCGGTGCAGAAAGAAACGGAGGGG
GTGTTTTTAGGGAGCATTTCAACGCAGCAAGGCGCCCGAAAGGCGTGAGA
CTACTGATGATGTCCGTGAGATGAGTGTGGCCTGAGGGGATACCCCCCCC
CCCTTTTTCCCGGCATCGATGTGATTCGGCTGTCGAATGTGTGAAGCGAG
AGGCTTCATCGACTTCATGCACACTTAGATGGCGACGGGAAGAGGCGTGT
CGAGATCATGCCGGCCTTGCTGCTACTTCTGCGTGACACACGGCCGATAC
TAGCACAGCGTGGCATGCACCGCCGTGGAATGTTCTCTGAGTACCGCCCG
CATCCCCCCCCCCCCCCCCCCCCCTAGGTGTTTACGGCTATCTTCGACTC
CTACTCGCACGGAGCGAACGACGTTGCCAACGCGATGGGACACTTCGCGG
GCATCTACATCGTGTACACCACGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15909:2..1076+

>mRNA_E-fasciculatus_F_contig15909.4048.1 ID=mRNA_E-fasciculatus_F_contig15909.4048.1|Name=mRNA_E-fasciculatus_F_contig15909.4048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15909:2..1076+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACATCCAATCTTCTCGACCGACATGCGTCCAGATGCACATCCAATC
TTCTCGACCGACATGCGTCCAGGTTGCCGCGGTAGAGCAGAAGGAGAAGC
AGACCGGCAGGCAGACCGGCGTCGTCGGGTTCGTGATGAACCAGATGAAC
CAGGACATACATCCACTCGAGCGTCAAGGAGTCGGAGTACGTCAGCCGGA
TCCACGGCAAGGCCTAGAAGTCCGACCCCCGGGCGGAGGAGGTCTTCAAG
CACGTGCAGGTTGCCGCGGTAGAGCAGAAGGAGAAGCAGACCGGCAGGCA
GACCGGCGTCGTCGGGTTCGTGATGAACCAGATGAACCAGGACATACATC
CACTCGAGCGTCAAGGAGTCGGAGTACGTCAGCCGGATCCACGGCAAGGC
CTAGAAGTCCGACCCCCGGGCGGAGGAGGTCTTCAAGCACGTGCAGGTGT
TTACGGCTATCTTCGACTCCTACTCGCACGGAGCGAACGACGTTGCCAAC
GCGATGGGACACTTCGCGGGCATCTACATCGTGTACACCACGGGGTGTTT
ACGGCTATCTTCGACTCCTACTCGCACGGAGCGAACGACGTTGCCAACGC
GATGGGACACTTCGCGGGCATCTACATCGTGTACACCACGGG
back to top