mRNA_E-fasciculatus_F_contig15905.4046.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15905.4046.1
Unique NamemRNA_E-fasciculatus_F_contig15905.4046.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.480e-34
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:   34 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKARD 228
            GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQ+H VQYKGDPLADLALMPFLNRMAYKNPKARD
Sbjct:  827 GGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 891
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A6H5JK74_9PHAE (CBF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK74_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.560e-34
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:   13 DDKKLYPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKARD 228
            D +  + GG VQPLWEASLLRSHVHPSVSRFA SLVSKQQ+H VQYKGDPLADLALMPFLNRMAYKNPKARD
Sbjct:   52 DPRFAFAGGEVQPLWEASLLRSHVHPSVSRFAGSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARD 123
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A4D9CW61_9STRA (CBF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   52 LWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKAR 225
            LWE  LL  H HPSV RFA S++  +  H V Y GDPL D + M FL+R A+KNPK R
Sbjct:  623 LWEVGLLALHFHPSVQRFAASVLDPRARHRVTYSGDPLQDFSTMAFLDRFAFKNPKLR 680
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.700e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   37 GGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPK 219
            GGV  LWEA+ LR H HPSV+ FA  L++   H  ++YKGDPL D  LMPFL+R+AY+N K
Sbjct:  865 GGVA-LWEATQLRWHYHPSVAHFALELLTPPGHG-IRYKGDPLVDFGLMPFLDRLAYRNAK 923
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A7S1CM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM83_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.850e-12
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 YPSTDDKKLYPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKARD 228
            Y     + L+ G    P WE   L  H HPSV +FA+S++       V Y GDPL D +LM FL+R  YKNPKA+D
Sbjct:  313 YDPAKREPLHSGAASSPAWELIALAQHYHPSVRKFAESVLEAPVSG-VGYSGDPLKDFSLMSFLDRFVYKNPKAKD 387
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A0L0FXN2_9EUKA (CBF domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FXN2_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 2.120e-10
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 YPSTDDKKLYPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKARD 228
            Y  T  + LY GG    LWE +LL  H HPSV++FA +++  ++   ++Y  DPL D  L+ FL++  YKN K ++
Sbjct:  678 YDPTKREPLYAGGDTTCLWELTLLARHYHPSVAKFAATILMGRK---IEYSSDPLVDFTLIHFLDKFVYKNAKKKE 750
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A7S4K5P2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K5P2_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 2.340e-10
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   28 YPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKAR 225
            Y      P WE SLL SH HPSV ++A+ L +    + ++YKGDP+ D++L+ FL+R +++NPK +
Sbjct:    7 YANASSTPTWELSLLVSHYHPSVRKWAELLSTG---NPIEYKGDPILDMSLIAFLDRYSFRNPKRK 69
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A2G8LPV8_STIJA (CBF domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LPV8_STIJA)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-9
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   55 WEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKAR 225
            WE   L  H HPSVS+FA+ +++ +   T+ Y G+PL D  +M FLNR  YKNPK+R
Sbjct:  627 WELMKLAGHFHPSVSQFAEKILTGE---TIMYDGNPLDDFTIMKFLNRFVYKNPKSR 680
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A2G8JG28_STIJA (Putative CCAAT/enhancer-binding protein zeta n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JG28_STIJA)

HSP 1 Score: 62.4 bits (150), Expect = 1.270e-9
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   55 WEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPFLNRMAYKNPKAR 225
            WE   L  H HPSVS+FA+ +++ +   T+ Y G+PL D  +M FLNR  YKNPK+R
Sbjct:   27 WELMKLAGHFHPSVSQFAEKILTGK---TIMYDGNPLDDFTIMKFLNRFVYKNPKSR 80
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BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Match: A0A7R9Z0Z7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z0Z7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.420e-8
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   37 GGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQYKGDPLADLALMPF 189
            G    LWE +LLR+H HPSV++FA +L +      V+Y GDPL D ALMPF
Sbjct:   59 GAYGGLWEVALLRTHFHPSVTKFATALPNP-----VEYSGDPLRDFALMPF 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15905.4046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI2.480e-3496.92CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JK74_9PHAE4.560e-3486.11CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9CW61_9STRA1.050e-1255.17CBF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A835ZC94_9STRA3.700e-1257.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CM83_9STRA8.850e-1244.74Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0L0FXN2_9EUKA2.120e-1039.47CBF domain-containing protein n=1 Tax=Sphaeroforma... [more]
A0A7S4K5P2_9EUKA2.340e-1042.42Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A2G8LPV8_STIJA1.010e-949.12CBF domain-containing protein n=1 Tax=Stichopus ja... [more]
A0A2G8JG28_STIJA1.270e-949.12Putative CCAAT/enhancer-binding protein zeta n=1 T... [more]
A0A7R9Z0Z7_9STRA2.420e-852.94Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15905contigE-fasciculatus_F_contig15905:96..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.9e-29
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928057.39136-CDS-E-fasciculatus_F_contig15905:95..3231622928057.39136-CDS-E-fasciculatus_F_contig15905:95..323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15905 96..323 -
1695995806.6873538-CDS-E-fasciculatus_F_contig15905:95..3231695995806.6873538-CDS-E-fasciculatus_F_contig15905:95..323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15905 96..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15905.4046.1prot_E-fasciculatus_F_contig15905.4046.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15905 96..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15905.4046.1

>prot_E-fasciculatus_F_contig15905.4046.1 ID=prot_E-fasciculatus_F_contig15905.4046.1|Name=mRNA_E-fasciculatus_F_contig15905.4046.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
YPSTDDKKLYPGGGVQPLWEASLLRSHVHPSVSRFADSLVSKQQHHTVQY
KGDPLADLALMPFLNRMAYKNPKARD
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mRNA from alignment at E-fasciculatus_F_contig15905:96..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15905.4046.1 ID=mRNA_E-fasciculatus_F_contig15905.4046.1|Name=mRNA_E-fasciculatus_F_contig15905.4046.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15905:96..323- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCCATCCACCGATGACAAAAAATTGTACCCAGGCGGAGGGGTTCAGCC
GCTTTGGGAGGCATCGCTCCTGCGGTCGCACGTGCATCCTTCGGTGTCGA
GGTTCGCCGACAGCCTGGTGTCCAAGCAGCAGCACCACACCGTCCAGTAT
AAGGGGGACCCGCTGGCCGACCTGGCCCTGATGCCCTTCCTCAACAGGAT
GGCCTATAAAAACCCAAAGGCTAGGGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15905:96..323-

>mRNA_E-fasciculatus_F_contig15905.4046.1 ID=mRNA_E-fasciculatus_F_contig15905.4046.1|Name=mRNA_E-fasciculatus_F_contig15905.4046.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15905:96..323- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCCATCCACCGATGACAAAAAATTGTACCCAGGCGGAGGGGTTCAGCC
GCTTTGGGAGGCATCGCTCCTGCGGTCGCACGTGCATCCTTCGGTGTCGA
GGTTCGCCGACAGCCTGGTGTCCAAGCAGCAGCACCACACCGTCCAGTAT
AAGGGGGACCCGCTGGCCGACCTGGCCCTGATGCCCTTCCTCAACAGGAT
GGCCTATAAAAACCCAAAGGCTAGGGACTACCCATCCACCGATGACAAAA
AATTGTACCCAGGCGGAGGGGTTCAGCCGCTTTGGGAGGCATCGCTCCTG
CGGTCGCACGTGCATCCTTCGGTGTCGAGGTTCGCCGACAGCCTGGTGTC
CAAGCAGCAGCACCACACCGTCCAGTATAAGGGGGACCCGCTGGCCGACC
TGGCCCTGATGCCCTTCCTCAACAGGATGGCCTATAAAAACCCAAAGGCT
AGGGAC
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