prot_E-fasciculatus_F_contig15881.4034.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15881.4034.1
Unique Nameprot_E-fasciculatus_F_contig15881.4034.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length190
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15881.4034.1 vs. uniprot
Match: A0A6H5KDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN1_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.850e-106
Identity = 163/186 (87.63%), Postives = 168/186 (90.32%), Query Frame = 0 
Query:    5 RALFV-SGVLGGAAAIGVLGSSSPVSAAGFFTKDRMELEQVPTRTVVGKTQSISWADVAPKIAAMRAEAREHFAQTPGAEGGREFTTFSNQTPEGAEVTVGLEVSDAKGSPAVSNGFTASVISPPGQYLRDDHDGKPGMTPWISFMARLAKDGYTMEEPLAMFEVYSGQGGEESVTMYASVKGPAK 189
            RA F+  GVLGGAAAIGVLGS SPVSAAG FTKDRM LEQVP RTV+GKTQS SWADVAPKIAAMRAEAREHFAQTPGAEGGRE T FSNQ  E  +VTVGLEV DAKGSPA+SNGFTASVISPPGQYLRDDHDGKPG+TPWISFMARLAKDGYTM EPLAMFEVYSGQGGEESVTMY SV GPAK
Sbjct:   80 RAGFIRGGVLGGAAAIGVLGSPSPVSAAGLFTKDRMVLEQVPLRTVIGKTQSTSWADVAPKIAAMRAEAREHFAQTPGAEGGRELTAFSNQNAESVDVTVGLEVVDAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGGEESVTMYTSVNGPAK 265
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15881.4034.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDN1_9PHAE1.850e-10687.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011256Regulatory factor, effector binding domain superfamilyGENE3D3.20.80.10coord: 32..180
e-value: 1.8E-5
score: 26.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..189
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..22
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..18
score: 0.548
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15881contigE-fasciculatus_F_contig15881:1287..2777 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15881.4034.1mRNA_E-fasciculatus_F_contig15881.4034.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15881 1287..2777 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15881.4034.1 ID=prot_E-fasciculatus_F_contig15881.4034.1|Name=mRNA_E-fasciculatus_F_contig15881.4034.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
MSVLRALFVSGVLGGAAAIGVLGSSSPVSAAGFFTKDRMELEQVPTRTVV
GKTQSISWADVAPKIAAMRAEAREHFAQTPGAEGGREFTTFSNQTPEGAE
VTVGLEVSDAKGSPAVSNGFTASVISPPGQYLRDDHDGKPGMTPWISFMA
RLAKDGYTMEEPLAMFEVYSGQGGEESVTMYASVKGPAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom_sf