mRNA_E-fasciculatus_F_contig15875.4031.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15875.4031.1
Unique NamemRNA_E-fasciculatus_F_contig15875.4031.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A6H5KKU1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU1_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.190e-58
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVL+FLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG
Sbjct: 1243 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLDFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 1338          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A812YR71_SYMMI (PikE protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YR71_SYMMI)

HSP 1 Score: 140 bits (352), Expect = 7.070e-40
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y +LAT  T G++EFV GS+P+SAVL+++ NS+L +L+HHN D  GPLGMK EA+D F RSCA SCVVTY+LG+GDRHLDN+M+   G LFHIDFG
Sbjct:   23 YGILATGPTDGVMEFVRGSMPISAVLSSYGNSILTYLKHHNPDSKGPLGMKAEAMDMFVRSCASSCVVTYILGIGDRHLDNVMIRTNGQLFHIDFG 118          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A836CGT8_9STRA (Phosphatidylinositol 3-kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.230e-38
Identity = 63/96 (65.62%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            YR+LAT    G++EFV GS+P+S VLAT  NS+L++LRHHN D  GP+G+ R+A+  F +SCAG CV+TY+LG+GDRHLDNLMLLPEG LFHIDFG
Sbjct:  412 YRILATGPKDGLVEFVAGSLPISQVLATFGNSILDYLRHHNPDAAGPMGVARDAVLTFVKSCAGYCVITYILGIGDRHLDNLMLLPEGNLFHIDFG 507          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A7S3XVP8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVP8_HETAK)

HSP 1 Score: 130 bits (326), Expect = 3.520e-35
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            YR+LAT    GM+EFV GS+P+SA+   +  S+LEFLR    D GGP+G+  E +D F +S AG CVVTYLLG+GDRHLDNLM+LP+G LFHIDFG
Sbjct:   63 YRILATGAKDGMMEFVEGSLPVSAINKKYPGSILEFLRASAPDAGGPMGVAAEVMDTFVKSTAGYCVVTYLLGIGDRHLDNLMMLPDGRLFHIDFG 158          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: D7FHY6_ECTSI (Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.710e-35
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y +LAT    G++EFV GS P+SAVL+ HN S+LE+LRHHN DP  P G++   + NF ++ AG CV+TYLLG+GDRHLDN+M+LP G LFHIDFG
Sbjct:  821 YGILATGPRHGLVEFVSGSQPVSAVLSAHNGSILEYLRHHNPDPSAPKGVRAAGVQNFVKNTAGYCVITYLLGIGDRHLDNIMMLPTGNLFHIDFG 916          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A7S0FRS7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FRS7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.250e-34
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y +LATS +TG++EFV GS+P+S VLA +NNS+L+FL+      G   G+  + +  + RSCAG CV+TYLLGVGDRHLDN+MLLP G  FHIDFG
Sbjct:   12 YAILATSASTGLVEFVDGSIPISQVLANNNNSILQFLKKSAPRQGAKYGIDSDVMQTYLRSCAGYCVITYLLGVGDRHLDNIMLLPSGHFFHIDFG 107          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A7S1ZII3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZII3_TRICV)

HSP 1 Score: 126 bits (317), Expect = 2.710e-34
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y ++ATS TTG++EFV GS P+SA+LA H NS+L++ R      G   G+K E ++ + RSCAG CV+TYLLGVGDRHLDN+MLLP G  FHIDFG
Sbjct:   54 YSIIATSETTGLVEFVEGSAPISAILANHGNSILQYFRAAAPLKGTKYGVKPEVMNAYLRSCAGYCVITYLLGVGDRHLDNIMLLPTGHFFHIDFG 149          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A7S0PHI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHI9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.070e-33
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 YRVLATSLT--TGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y ++AT+ +   G++E+V GS+P+SAVLA +NNS+L+FL+H N      LG+  EA+ N+ RSCAG CV+TYL+GVGDRHLDN+MLL  G LFHIDFG
Sbjct:  174 YSIIATNSSPPAGLVEYVEGSLPVSAVLAQYNNSILKFLQHFNPQKSSELGVTNEAMQNYVRSCAGYCVITYLMGVGDRHLDNIMLLQTGQLFHIDFG 271          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: A0A0G4ET88_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ET88_VITBC)

HSP 1 Score: 128 bits (322), Expect = 1.810e-32
Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            Y+V+ATS + GMIEFV G+  +SA+L+ +NN + +F   H+ DP  P G K + LDNF RSCAG CV+TYLLGVGDRHL+N++L  EG LFHIDFG
Sbjct:  925 YKVIATSPSDGMIEFVSGASALSAILSDYNNDIRQFFTRHHPDPSSPTGFKPQVLDNFIRSCAGYCVLTYLLGVGDRHLENILLDQEGHLFHIDFG 1020          
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Match: W9YSY7_9EURO (Phosphatidylinositol 3-kinase VPS34 n=2 Tax=Capronia TaxID=43220 RepID=W9YSY7_9EURO)

HSP 1 Score: 127 bits (319), Expect = 4.560e-32
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGMKREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG 288
            YR+LATS + G ++F+P S P+SAV A +  SVL +LR +N D  GPLG+++E +D + RSCAG CV+TY+LGVGDRHLDNL+L P G  FHIDFG
Sbjct:  726 YRILATSPSAGAVQFIP-STPISAVSAKYKGSVLAYLRANNPDSSGPLGVRKETMDTYIRSCAGYCVITYILGVGDRHLDNLLLQPSGHFFHIDFG 820          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15875.4031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKU1_9PHAE8.190e-5898.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812YR71_SYMMI7.070e-4064.58PikE protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A836CGT8_9STRA1.230e-3865.63Phosphatidylinositol 3-kinase n=1 Tax=Tribonema mi... [more]
A0A7S3XVP8_HETAK3.520e-3561.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FHY6_ECTSI6.710e-3560.42Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A7S0FRS7_9STRA1.250e-3458.33Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1ZII3_TRICV2.710e-3459.38Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0PHI9_9STRA2.070e-3358.16Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A0G4ET88_VITBC1.810e-3259.38Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
W9YSY7_9EURO4.560e-3259.38Phosphatidylinositol 3-kinase VPS34 n=2 Tax=Capron... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15875contigE-fasciculatus_F_contig15875:47..1208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue4.2e-49
Seed eggNOG ortholog2880.D8LNH7
KEGG rclassRC00002,RC00078
KEGG koko:K00914,ko:K04679
KEGG ReactionR03362
KEGG Pathwayko00562,ko01100,ko04070,ko04136,ko04138,ko04140,ko04144,ko04145,ko04350,ko04371,ko05152,ko05167,map00562,map01100,map04070,map04136,map04138,map04140,map04144,map04145,map04350,map04371,map05152,map05167
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsCOG5032@1,KOG0906@2759,KOG1841@1,KOG1841@2759
EC2.7.1.137
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.7583241-CDS-E-fasciculatus_F_contig15875:46..2421622928054.7583241-CDS-E-fasciculatus_F_contig15875:46..242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15875 47..242 -
1695995805.3121333-CDS-E-fasciculatus_F_contig15875:46..2421695995805.3121333-CDS-E-fasciculatus_F_contig15875:46..242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15875 47..242 -
1622928054.768631-CDS-E-fasciculatus_F_contig15875:1113..12081622928054.768631-CDS-E-fasciculatus_F_contig15875:1113..1208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15875 1114..1208 -
1695995805.3332644-CDS-E-fasciculatus_F_contig15875:1113..12081695995805.3332644-CDS-E-fasciculatus_F_contig15875:1113..1208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15875 1114..1208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15875.4031.1prot_E-fasciculatus_F_contig15875.4031.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15875 47..1208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15875.4031.1

>prot_E-fasciculatus_F_contig15875.4031.1 ID=prot_E-fasciculatus_F_contig15875.4031.1|Name=mRNA_E-fasciculatus_F_contig15875.4031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=97bp
YRVLATSLTTGMIEFVPGSVPMSAVLATHNNSVLEFLRHHNADPGGPLGM
KREALDNFTRSCAGSCVVTYLLGVGDRHLDNLMLLPEGVLFHIDFG*
back to top

mRNA from alignment at E-fasciculatus_F_contig15875:47..1208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15875.4031.1 ID=mRNA_E-fasciculatus_F_contig15875.4031.1|Name=mRNA_E-fasciculatus_F_contig15875.4031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1162bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15875:47..1208- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCGCGTGCTGGCGACAAGCTTGACAACCGGGATGATCGAGTTCGTCCC TGGCTCGGTTCCCATGTCGGCCGTTCTCGCGACGCACAACAACAGGTGTG TGGAACACGCTCACTCGTATTTTCATTGGTGAAGCCTGTTTTAGTAGAAC ACACACATGCTTTCTTCCTACCAACAGCTCGAAGCGGCATTTGGTGTTAG CCATCATTGGAACGATCGCGACCATTTAGCTTTAGCCTATTTCCTCGCGT CTTTCCTGTTCGCGTGACGGAGTTCTTTTGCGACTTCAAAACACCGTAGC AACTACTGTACAGCTGCTGTAGAAGGAGCGGGTGTAACAAAGTTGATCGA AGACTTCGACTTAACACATTGTTTTGTAACCCTTGATCGACCGTGTTTTG AGTGCGTGTACCGCTGTAGCGTGTTGTGCTCGAGGTTCTGCGATTCCGCA TGTAGCAAGTGATGGAAGACCTCCAAATGACACCGCAAATGAGAAACTGC TTCCGAAGTTGGGGTGGCAAGTGATCGAAGACTTGTGATTGATCATGCGC TTACAATAAAAGTATGTATTCCCTGATCGATCGCGTTTTGCGTGCGGGTA CTGCTGTACTGCTGTAGCGTGCTAGAGTGTCTGCCACACCGTAAACTCTT GTCGAAGCGGGTGTAGCAACTGATCGAAGAATGGCAATTCTGTTGTCTCC CGACGGCGCAGCAACAACTGCAGCCTACCGCTGTCGAAGGGAAAACTTAC TCCTTGTTCCTTTGTCGACGACCGCGTGTAGCGTGTTCTGTAGCGTGCTG GATTTCTTGCGGCACCGTAAACTGTTGTCGAAGCGGGTGATGGAAGAATT TTAATTTTGTTGATGCTTGGAAGTGGGTGTAGCAGCAACTGATCGAAGAA TGGCAATTATGTGTTACTCCTTGCGTGTTTACCGGCTGCGTATTGCGTGT GCTGCTTGCTGTGCAGCGTGCTTGAGTTCTTGCGGCACCACAACGCGGAC CCCGGCGGGCCCCTCGGCATGAAGCGCGAGGCGCTCGACAACTTCACACG GAGCTGCGCCGGCAGCTGCGTGGTGACGTACCTCCTCGGGGTAGGGGACC GTCACCTGGACAACCTCATGCTGCTGCCGGAGGGGGTGTTGTTCCACATC GACTTTGGGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15875:47..1208-

>mRNA_E-fasciculatus_F_contig15875.4031.1 ID=mRNA_E-fasciculatus_F_contig15875.4031.1|Name=mRNA_E-fasciculatus_F_contig15875.4031.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15875:47..1208- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCGCGTGCTGGCGACAAGCTTGACAACCGGGATGATCGAGTTCGTCCC
TGGCTCGGTTCCCATGTCGGCCGTTCTCGCGACGCACAACAACAGTACCG
CGTGCTGGCGACAAGCTTGACAACCGGGATGATCGAGTTCGTCCCTGGCT
CGGTTCCCATGTCGGCCGTTCTCGCGACGCACAACAACAGCGTGCTTGAG
TTCTTGCGGCACCACAACGCGGACCCCGGCGGGCCCCTCGGCATGAAGCG
CGAGGCGCTCGACAACTTCACACGGAGCTGCGCCGGCAGCTGCGTGGTGA
CGTACCTCCTCGGGGTAGGGGACCGTCACCTGGACAACCTCATGCTGCTG
CCGGAGGGGGTGTTGTTCCACATCGACTTTGGGTGACGTGCTTGAGTTCT
TGCGGCACCACAACGCGGACCCCGGCGGGCCCCTCGGCATGAAGCGCGAG
GCGCTCGACAACTTCACACGGAGCTGCGCCGGCAGCTGCGTGGTGACGTA
CCTCCTCGGGGTAGGGGACCGTCACCTGGACAACCTCATGCTGCTGCCGG
AGGGGGTGTTGTTCCACATCGACTTTGGGTGA
back to top