mRNA_E-fasciculatus_F_contig15829.4003.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15829.4003.1
Unique NamemRNA_E-fasciculatus_F_contig15829.4003.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: V8NQI3_OPHHA (Short-chain specific acyl-CoA dehydrogenase, mitochondrial (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NQI3_OPHHA)

HSP 1 Score: 51.6 bits (122), Expect = 2.250e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 RGGRLVCLMLFQAYAIAMEEISRGCASTGVIMSVNNVS 114
            RG  L CL    AY +A+EEISRGCASTGVIMSVNNV+
Sbjct:   16 RGAGLDCL----AYTVALEEISRGCASTGVIMSVNNVA 49
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A2D4C8B9_PYTIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8B9_PYTIN)

HSP 1 Score: 51.6 bits (122), Expect = 8.570e-7
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNNV 111
            + AYAIAMEEISRGCASTGVIMSVNNV
Sbjct:   90 YLAYAIAMEEISRGCASTGVIMSVNNV 116
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: UPI0009A2AEE1 (LOW QUALITY PROTEIN: short-chain specific acyl-CoA dehydrogenase, mitochondrial n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2AEE1)

HSP 1 Score: 50.4 bits (119), Expect = 8.150e-6
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   99 YLAYAIAMEEISRGCASTGVIMSVNN 124
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A2K5C8L9_AOTNA (Acyl-CoA dehydrogenase short chain n=1 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5C8L9_AOTNA)

HSP 1 Score: 50.8 bits (120), Expect = 8.300e-6
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNNVS 114
            + AYAIA EEISRGCASTGVIMSVNNVS
Sbjct:   95 YLAYAIATEEISRGCASTGVIMSVNNVS 122
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A7S1NP91_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP91_9EUGL)

HSP 1 Score: 50.8 bits (120), Expect = 8.330e-6
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   25 MLFQAYAIAMEEISRGCASTGVIMSVNN 108
            M + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   98 MDYLAYAIAMEEISRGCASTGVIMSVNN 125
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A6A1Q4Q5_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A6A1Q4Q5_BALPH)

HSP 1 Score: 50.4 bits (119), Expect = 1.090e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   40 YLAYAIAMEEISRGCASTGVIMSVNN 65
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: UPI001F125B49 (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3 n=1 Tax=Lynx rufus TaxID=61384 RepID=UPI001F125B49)

HSP 1 Score: 50.4 bits (119), Expect = 1.120e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:  123 YLAYAIAMEEISRGCASTGVIMSVNN 148
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BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: UPI001E26F3CC (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=UPI001E26F3CC)

HSP 1 Score: 50.4 bits (119), Expect = 1.120e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   92 YLAYAIAMEEISRGCASTGVIMSVNN 117
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A8C4PHW9_EQUAS (Acyl-CoA dehydrogenase short chain n=1 Tax=Equus asinus asinus TaxID=83772 RepID=A0A8C4PHW9_EQUAS)

HSP 1 Score: 50.4 bits (119), Expect = 1.130e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   95 YLAYAIAMEEISRGCASTGVIMSVNN 120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Match: A0A341B3G5_NEOAA (short-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2 n=1 Tax=Neophocaena asiaeorientalis asiaeorientalis TaxID=1706337 RepID=A0A341B3G5_NEOAA)

HSP 1 Score: 50.4 bits (119), Expect = 1.130e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   31 FQAYAIAMEEISRGCASTGVIMSVNN 108
            + AYAIAMEEISRGCASTGVIMSVNN
Sbjct:   95 YLAYAIAMEEISRGCASTGVIMSVNN 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15829.4003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V8NQI3_OPHHA2.250e-771.05Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A2D4C8B9_PYTIN8.570e-792.59Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
UPI0009A2AEE18.150e-692.31LOW QUALITY PROTEIN: short-chain specific acyl-CoA... [more]
A0A2K5C8L9_AOTNA8.300e-689.29Acyl-CoA dehydrogenase short chain n=1 Tax=Aotus n... [more]
A0A7S1NP91_9EUGL8.330e-689.29Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6A1Q4Q5_BALPH1.090e-592.31Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
UPI001F125B491.120e-592.31short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
UPI001E26F3CC1.120e-592.31short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
A0A8C4PHW9_EQUAS1.130e-592.31Acyl-CoA dehydrogenase short chain n=1 Tax=Equus a... [more]
A0A341B3G5_NEOAA1.130e-592.31short-chain specific acyl-CoA dehydrogenase, mitoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15829contigE-fasciculatus_F_contig15829:2134..2313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.8343275-CDS-E-fasciculatus_F_contig15829:2133..22891622928051.8343275-CDS-E-fasciculatus_F_contig15829:2133..2289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15829 2134..2289 -
1695995803.9295397-CDS-E-fasciculatus_F_contig15829:2133..22891695995803.9295397-CDS-E-fasciculatus_F_contig15829:2133..2289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15829 2134..2289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.8455462-UTR-E-fasciculatus_F_contig15829:2289..23131622928051.8455462-UTR-E-fasciculatus_F_contig15829:2289..2313Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15829 2290..2313 -
1695995803.9389129-UTR-E-fasciculatus_F_contig15829:2289..23131695995803.9389129-UTR-E-fasciculatus_F_contig15829:2289..2313Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15829 2290..2313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15829.4003.1prot_E-fasciculatus_F_contig15829.4003.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15829 2134..2289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15829.4003.1

>prot_E-fasciculatus_F_contig15829.4003.1 ID=prot_E-fasciculatus_F_contig15829.4003.1|Name=mRNA_E-fasciculatus_F_contig15829.4003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=52bp
MLFQAYAIAMEEISRGCASTGVIMSVNNVSARVSRMHRVVFHCICVMAIG
H*
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mRNA from alignment at E-fasciculatus_F_contig15829:2134..2313-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15829.4003.1 ID=mRNA_E-fasciculatus_F_contig15829.4003.1|Name=mRNA_E-fasciculatus_F_contig15829.4003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15829:2134..2313- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGGTGGTCGGCTGGTCTGTTTAATGTTGTTCCAGGCGTACGCCATCGC
AATGGAGGAAATCAGCAGAGGCTGCGCGTCTACGGGGGTGATCATGAGCG
TCAACAATGTGAGCGCAAGGGTTTCACGTATGCATAGGGTTGTCTTCCAC
TGTATCTGTGTCATGGCCATTGGGCACTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15829:2134..2313-

>mRNA_E-fasciculatus_F_contig15829.4003.1 ID=mRNA_E-fasciculatus_F_contig15829.4003.1|Name=mRNA_E-fasciculatus_F_contig15829.4003.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15829:2134..2313- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTCCAGGCGTACGCCATCGCAATGGAGGAAATCAGCAGAGGCTG
CGCGTCTACGGGGGTGATCATGAGCGTCAACAATGTGAGCGCAAGGGTTT
CACGTATGCATAGGGTTGTCTTCCACTGTATCTGTGTCATGGCCATTGGG
CACTAGATGTTGTTCCAGGCGTACGCCATCGCAATGGAGGAAATCAGCAG
AGGCTGCGCGTCTACGGGGGTGATCATGAGCGTCAACAATGTGAGCGCAA
GGGTTTCACGTATGCATAGGGTTGTCTTCCACTGTATCTGTGTCATGGCC
ATTGGGCACTAG
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