mRNA_E-fasciculatus_F_contig15804.3994.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: D8LI30_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI30_ECTSI) HSP 1 Score: 159 bits (401), Expect = 7.150e-48 Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
IHKLFLDPTGNHLLACLHGGETYYLHSA TRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE
Sbjct: 33 IHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 108
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.650e-43 Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
IHKLFLDPTGNHLLACLHGGETYYLHSA TRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE
Sbjct: 247 IHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 322
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A4D9CQ63_9STRA (Pep3_Vps18 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ63_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.250e-16 Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
++K+FLDPTG+HLL E +YLH+ A RL KW G+VVEAVAFD+ +E ST+ I++G+ G+ +E+ LE
Sbjct: 199 VYKIFLDPTGSHLLVSTRAAEHFYLHARAHSFSRLHKWHGIVVEAVAFDTVYGSESSTRSILLGSNRGEFFETVLE 274
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A482S3Q7_9ARCH (Pep3_Vps18 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3Q7_9ARCH) HSP 1 Score: 78.2 bits (191), Expect = 3.830e-15 Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
I + LDP+G+HLL + G+ YYLHS AT+PK+L K SG V E AFD+ +E +T+ +VGT +G +YE SL+
Sbjct: 95 IDNILLDPSGHHLLIAMRSGDNYYLHSKATKPKKLSKLSGTV-ECAAFDNINSSELNTRSFLVGTSTGTVYEISLD 169
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A4S8IP65_MUSBA (RING-type domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8IP65_MUSBA) HSP 1 Score: 78.2 bits (191), Expect = 3.830e-15 Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLAC-LH--GGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
+H++F+DP G+H + LH G ETYY+H+ RP+ L + G+VV AVA++ Q+ TEGSTK +++GT +G L+E +++
Sbjct: 134 VHRVFVDPRGSHCITTVLHAAGAETYYIHAKWARPRVLSRLKGLVVNAVAWNRQQITEGSTKEVILGTENGQLFEMAVD 212
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A1D1YN30_9ARAE (Vacuolar protein sorting-associated protein 18 n=2 Tax=Araceae TaxID=4454 RepID=A0A1D1YN30_9ARAE) HSP 1 Score: 76.6 bits (187), Expect = 1.330e-14 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLA---CLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
+H++F+DP G+H +A C G ETYY H+ RP+ L + G++V AVA++ Q TE ST+ I++GT SG LYE +++
Sbjct: 68 VHRVFVDPGGSHCIATVLCNGGAETYYSHAKWGRPRILNRLKGIIVNAVAWNRQHITEASTREIILGTDSGQLYEVAVD 146
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: UPI000B8C7FFE (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C7FFE) HSP 1 Score: 75.1 bits (183), Expect = 4.640e-14 Identity = 33/79 (41.77%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGG---ETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
++K+F+DP G+H +A + GG +TYY+H+ ++P+ L + G+VV AVA++ Q TEGSTK +++GT +G L+E +++
Sbjct: 68 VNKVFVDPGGSHCVATVVGGSGPDTYYIHAKWSKPRVLSRLKGLVVNAVAWNRQHITEGSTKEVILGTDNGQLFEIAVD 146
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A7I8KBT7_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KBT7_SPIIN) HSP 1 Score: 74.3 bits (181), Expect = 8.660e-14 Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACL--HGG-ETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
+H++ +DP G+H +A + HGG ETYY+H+ RP+ L + G+VV AVA++ Q TE STK I++GT +G L+E +++
Sbjct: 68 VHRVTVDPGGSHCIATVLSHGGAETYYMHAKWGRPRILSRLKGIVVNAVAWNRQNITEASTKDIILGTDTGQLFELAVD 146
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: A0A7S4L8A8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L8A8_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 1.070e-13 Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSL 225
IHKLF+DPTG HL+ L ET+YLH RPK L K+ G++++++A+D +T I++GT G + E+S+
Sbjct: 57 IHKLFMDPTGVHLIVSLTNMETWYLHRDQLRPKILDKFKGILIDSIAWDKTNEDPTTTSRILIGTNKGRIREASI 131
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Match: I1I140_BRADI (Pep3_Vps18 domain-containing protein n=54 Tax=Poaceae TaxID=4479 RepID=I1I140_BRADI) HSP 1 Score: 72.8 bits (177), Expect = 3.020e-13 Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 IHKLFLDPTGNH-LLACLH--GGETYYLHSAATRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLE 228
+H++FLDP G H ++ +H G ETYY H+ RPK L + G++V AVA++ Q TE STK +++GT SG ++E +++
Sbjct: 67 VHRVFLDPGGKHCVVTVIHPGGAETYYHHARWPRPKLLPRLRGLLVNAVAWNRQSITEASTKEVILGTESGQIFEMAVD 145 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15804.3994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15804.3994.1 >prot_E-fasciculatus_F_contig15804.3994.1 ID=prot_E-fasciculatus_F_contig15804.3994.1|Name=mRNA_E-fasciculatus_F_contig15804.3994.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp IHKLFLDPTGNHLLACLHGGETYYLHSAATRPKRLLKWSGVVVEAVAFDSback to top mRNA from alignment at E-fasciculatus_F_contig15804:324..1224- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15804.3994.1 ID=mRNA_E-fasciculatus_F_contig15804.3994.1|Name=mRNA_E-fasciculatus_F_contig15804.3994.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=901bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15804:324..1224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15804:324..1224- >mRNA_E-fasciculatus_F_contig15804.3994.1 ID=mRNA_E-fasciculatus_F_contig15804.3994.1|Name=mRNA_E-fasciculatus_F_contig15804.3994.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15804:324..1224- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |