mRNA_E-fasciculatus_F_contig15780.3978.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15780.3978.1
Unique NamemRNA_E-fasciculatus_F_contig15780.3978.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 3.960e-65
Identity = 116/135 (85.93%), Postives = 122/135 (90.37%), Query Frame = 1
Query:    1 FILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSGETTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            FILQEHKLGVSVHS+HPLINEARAAFP ARREYRRLR+A  S ERMPS E+++P+EG  GGALS  VAVAA TLLSVTRALLLVNADHGSAWN RKQLVVDG CEG SIPQEIKLLNLIFTKHAKSPNAWAHRRW
Sbjct:   73 FILQEHKLGVSVHSIHPLINEARAAFPVARREYRRLRRAHSSLERMPSEESSKPKEG-RGGALSG-VAVAAATLLSVTRALLLVNADHGSAWNTRKQLVVDGLCEGSSIPQEIKLLNLIFTKHAKSPNAWAHRRW 205          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 6.060e-65
Identity = 114/135 (84.44%), Postives = 120/135 (88.89%), Query Frame = 1
Query:    1 FILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSGETTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            FILQEHKLGVSVHS+HPLINEAR AFP  RREYRRLRQA  SRERMPS E+ +P+EG  GGALSD +AVAA TLLSVTRALLLVNADH SAWN RKQLVVDG CEG SIPQE+KLLNLIFTKHAKSPNAWAHRRW
Sbjct:   61 FILQEHKLGVSVHSIHPLINEARGAFPVTRREYRRLRQAHSSRERMPSEESAKPKEG-RGGALSD-LAVAAGTLLSVTRALLLVNADHASAWNTRKQLVVDGLCEGSSIPQEVKLLNLIFTKHAKSPNAWAHRRW 193          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: D8TDE4_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TDE4_SELML)

HSP 1 Score: 83.6 bits (205), Expect = 3.300e-16
Identity = 51/135 (37.78%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 FILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSGETTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            F L++HKLG++V+++ PL  EA+A F A R E ++                 R E G S            E+LL VTRALL+VN+D+ +AWN RK+++   S     +  E++L +L+ T   KS  AWAHRRW
Sbjct:   78 FWLRDHKLGIAVNALRPLYTEAQAVFSALRAEEKQC---------------GRQENGFS----------KEESLLKVTRALLIVNSDYSTAWNTRKRVLGKSSFSQSGMISELRLSSLVLTYAPKSEEAWAHRRW 187          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A7S4DGU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGU3_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 2.080e-14
Identity = 50/137 (36.50%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 FILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSGETTRPEEGGS--GGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            FIL +HKLG+S+  + PL  E+R AF   RR++                       GG   GG  +         L+  +RALLL+N D  +AWN RK+L++ G  +      E+K L+L+FTK AK P++WAHR W
Sbjct:   78 FILIDHKLGISMSILQPLYRESREAFCILRRQW----------------------NGGQPVGGRKTGLRRPGRMALVQSSRALLLLNPDQYTAWNTRKELILGGYLDA---KDELKFLDLVFTKQAKKPSSWAHRSW 189          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A2R6WK18_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WK18_MARPO)

HSP 1 Score: 76.3 bits (186), Expect = 1.540e-13
Identity = 44/132 (33.33%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   13 EHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSG-ETTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            EHKL +S+ ++ PL   A+ AF ++  EYR++ +A L+    PS   T   +E  +  +++    +  ++L+S TRAL+L+N DH SAWN RK+++   +     +  E+++ +++ +   KS   WAHRRW
Sbjct:  121 EHKLAISMLALAPLYKYAKDAFTSSSAEYRKIGRAELN---SPSALGTVENQESVTATSITSKCGLE-DSLMSYTRALVLINCDHASAWNMRKRILSTKTANEILLSAELRIASIVLSCAPKSEETWAHRRW 248          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A3P3YKN4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YKN4_PLABS)

HSP 1 Score: 68.2 bits (165), Expect = 9.460e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  229 VTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            VTRALLLVNADH +AW  R++L+     +      E++L+NLIF+KH KS  AWAHRRW
Sbjct:  145 VTRALLLVNADHYTAWAQRRRLITRSVVDEAD---ELRLVNLIFSKHPKSGEAWAHRRW 200          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A0H5RQV7_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RQV7_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 3.030e-10
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  220 LLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            L++ TRA+LL+N DH SAW  R+++V  G      +  E++ LNL+F+KH+KS  AWA+RRW
Sbjct:  100 LMNATRAVLLINPDHYSAWTQRRRMVESGLI---GLLAELRFLNLVFSKHSKSGEAWAYRRW 158          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A8B8DP82_CRAVI (protein prenyltransferase alpha subunit repeat-containing protein 1-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DP82_CRAVI)

HSP 1 Score: 66.6 bits (161), Expect = 3.260e-10
Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    4 ILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLS-RERMPSGETTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            +LQEHKLG+   SV  L   A          Y +L    +S R+  P  +   P E                 L S+TRA+LLVNAD  +AWN RK+LV +G     S+ +++K   L+ TKH KSP  ++HR+W
Sbjct:   45 VLQEHKLGLEAWSVKVLFQYA----------YHQL----ISWRKNTPPTKFLDPGE-----------------LCSLTRAILLVNADCATAWNTRKELVDNGDL---SVTEDLKFGALVLTKHPKSPETFSHRKW 145          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: L8GVD3_ACACA (Protein prenyltransferase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVD3_ACACA)

HSP 1 Score: 66.6 bits (161), Expect = 3.450e-10
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  229 VTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            ++R +LL+NAD+ +AWN RK+L+ +      SI QE KL+NL+ +KH KS   WAHRRW
Sbjct:  129 LSRVVLLINADNYTAWNVRKRLITETH---SSIEQEFKLVNLVMSKHPKSGETWAHRRW 184          
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Match: A0A152A5U3_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A5U3_9MYCE)

HSP 1 Score: 65.9 bits (159), Expect = 5.830e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  229 VTRALLLVNADHGSAWNARKQLVVDGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW 405
            +TR +L +NA++ +A N RKQL+++G  E     +EIKLLNLIFTKH KS +AW HRRW
Sbjct:   89 LTRTILFINAENITALNIRKQLILNGYNEH---LKEIKLLNLIFTKHPKSGDAWTHRRW 144          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15780.3978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E1_ECTSI3.960e-6585.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXA5_9PHAE6.060e-6584.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8TDE4_SELML3.300e-1637.78Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A7S4DGU3_HETAK2.080e-1436.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R6WK18_MARPO1.540e-1333.33Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A3P3YKN4_PLABS9.460e-1155.93Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A0H5RQV7_9EUKA3.030e-1048.39Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A8B8DP82_CRAVI3.260e-1036.30protein prenyltransferase alpha subunit repeat-con... [more]
L8GVD3_ACACA3.450e-1050.85Protein prenyltransferase, putative n=1 Tax=Acanth... [more]
A0A152A5U3_9MYCE5.830e-1055.93Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15780contigE-fasciculatus_F_contig15780:1914..2702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.4e-55
Seed eggNOG ortholog2880.D7G9E1
Preferred namePTAR1
KEGG koko:K14137
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01006
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928048.3081455-CDS-E-fasciculatus_F_contig15780:1913..19761622928048.3081455-CDS-E-fasciculatus_F_contig15780:1913..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15780 1914..1976 -
1695995802.3205974-CDS-E-fasciculatus_F_contig15780:1913..19761695995802.3205974-CDS-E-fasciculatus_F_contig15780:1913..1976Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15780 1914..1976 -
1622928048.3243623-CDS-E-fasciculatus_F_contig15780:2360..27021622928048.3243623-CDS-E-fasciculatus_F_contig15780:2360..2702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15780 2361..2702 -
1695995802.3342137-CDS-E-fasciculatus_F_contig15780:2360..27021695995802.3342137-CDS-E-fasciculatus_F_contig15780:2360..2702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15780 2361..2702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15780.3978.1prot_E-fasciculatus_F_contig15780.3978.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15780 1914..2702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15780.3978.1

>prot_E-fasciculatus_F_contig15780.3978.1 ID=prot_E-fasciculatus_F_contig15780.3978.1|Name=mRNA_E-fasciculatus_F_contig15780.3978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=135bp
FILQEHKLGVSVHSVHPLINEARAAFPAARREYRRLRQARLSRERMPSGE
TTRPEEGGSGGALSDDVAVAAETLLSVTRALLLVNADHGSAWNARKQLVV
DGSCEGGSIPQEIKLLNLIFTKHAKSPNAWAHRRW
back to top

mRNA from alignment at E-fasciculatus_F_contig15780:1914..2702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15780.3978.1 ID=mRNA_E-fasciculatus_F_contig15780.3978.1|Name=mRNA_E-fasciculatus_F_contig15780.3978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=789bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15780:1914..2702- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCATCCTCCAAGAGCACAAGCTGGGGGTGTCCGTGCACAGCGTCCACCC CCTCATCAACGAAGCGCGGGCTGCGTTTCCTGCCGCCCGCCGGGAGTACC GTCGGCTGAGACAAGCGCGCTTGTCGCGCGAAAGGATGCCAAGCGGAGAG ACTACGAGGCCCGAGGAAGGCGGGAGTGGCGGCGCCCTTTCTGATGACGT TGCCGTCGCCGCGGAGACCCTCTTATCAGTTACTCGGGCCTTGTTGTTGG TAAACGCGGACCACGGGTCTGCGTGGAACGCGAGGAAACAGCTGGTCGTG GACGGGTCGTGCGAGGGGGGGTCTATTCCGCAGGAAATCAAGGTCAGTCG GCCGCGTGTGGGCGACTACCCCGTCGATGAGGTTGCGGTTGTGGGGGCTG GTTTGGTTGTCGGTGGCCAGGTGTGCCCGCAGGCCGTCGGTGACTGTACG TCTGTCTTTGTGCTTGTGGATGAACCCATGGCAGCGTAGCTACCGAAGAA CGAACGCGCGGTTGGTCCGTGGACAAATATCAATGGATGTTTCCTCCAGA GATGTATTGCACACCTCTTTTAACCCCAGCGATGATCTTGTTTTCCTCCA CTCGCACTTGCAGCAACCGCCTTTTCATCAACAGCGAAGAAATGCTCTGA CGAATCCCGTCCATAGCTCTTCGGCTTGCTCCTCTCCACGCTAACCCGAC CTACCGCGATGACACCTGCTGCGCAGCTCCTGAATTTGATCTTCACCAAG CACGCCAAGAGCCCGAACGCGTGGGCTCACCGACGATGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15780:1914..2702-

>mRNA_E-fasciculatus_F_contig15780.3978.1 ID=mRNA_E-fasciculatus_F_contig15780.3978.1|Name=mRNA_E-fasciculatus_F_contig15780.3978.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=810bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15780:1914..2702- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCATCCTCCAAGAGCACAAGCTGGGGGTGTCCGTGCACAGCGTCCACCC
CCTCATCAACGAAGCGCGGGCTGCGTTTCCTGCCGCCCGCCGGGAGTACC
GTCGGCTGAGACAAGCGCGCTTGTCGCGCGAAAGGATGCCAAGCGGAGAG
ACTACGAGGCCCGAGGAAGGCGGGAGTGGCGGCGCCCTTTCTGATGACGT
TGCCGTCGCCGCGGAGACCCTCTTATCAGTTACTCGGGCCTTGTTGTTGG
TAAACGCGGACCACGGGTCTGCGTGGAACGCGAGGAAACAGCTGGTCGTG
GACGGGTCGTGCGAGGGGGGGTCTATTCCGCAGGAAATCAAGTTCATCCT
CCAAGAGCACAAGCTGGGGGTGTCCGTGCACAGCGTCCACCCCCTCATCA
ACGAAGCGCGGGCTGCGTTTCCTGCCGCCCGCCGGGAGTACCGTCGGCTG
AGACAAGCGCGCTTGTCGCGCGAAAGGATGCCAAGCGGAGAGACTACGAG
GCCCGAGGAAGGCGGGAGTGGCGGCGCCCTTTCTGATGACGTTGCCGTCG
CCGCGGAGACCCTCTTATCAGTTACTCGGGCCTTGTTGTTGGTAAACGCG
GACCACGGGTCTGCGTGGAACGCGAGGAAACAGCTGGTCGTGGACGGGTC
GTGCGAGGGGGGGTCTATTCCGCAGGAAATCAAGCTCCTGAATTTGATCT
TCACCAAGCACGCCAAGAGCCCGAACGCGTGGGCTCACCGACGATGGCTC
CTGAATTTGATCTTCACCAAGCACGCCAAGAGCCCGAACGCGTGGGCTCA
CCGACGATGG
back to top