prot_E-fasciculatus_F_contig15777.3973.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15777.3973.1
Unique Nameprot_E-fasciculatus_F_contig15777.3973.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length78
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Match: D7G5J6_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.160e-24
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0 
Query:   11 TVSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASDDELWQDMYERTQ 62
            TVS VGGDEYVCPFLFDFLTI ELGRAASVCSTWRTNA+DDELW+++YERTQ
Sbjct:    2 TVSVVGGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWREIYERTQ 53
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BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Match: A0A6H5JK18_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK18_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.250e-23
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0 
Query:   12 VSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASDDELWQDMYERTQV 63
            VS V GDEYVCPFLFDFLTI ELGRAASVCSTWRTNA+DDELW+D+YERTQV
Sbjct:   18 VSVVSGDEYVCPFLFDFLTISELGRAASVCSTWRTNAADDELWRDIYERTQV 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15777.3973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5J6_ECTSI9.160e-2488.46F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK18_9PHAE1.250e-2388.46F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 26..58
e-value: 6.8E-7
score: 29.1
NoneNo IPR availableGENE3D1.20.1280.50coord: 20..75
e-value: 1.5E-9
score: 39.7
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 26..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15777contigE-fasciculatus_F_contig15777:2697..2930 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15777.3973.1mRNA_E-fasciculatus_F_contig15777.3973.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15777 2697..2930 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15777.3973.1 ID=prot_E-fasciculatus_F_contig15777.3973.1|Name=mRNA_E-fasciculatus_F_contig15777.3973.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
SCPKTQTNNTTVSAVGGDEYVCPFLFDFLTIRELGRAASVCSTWRTNASD
DELWQDMYERTQVQPAQPNAVYVGSSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom