mRNA_E-fasciculatus_F_contig15768.3968.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15768.3968.1
Unique NamemRNA_E-fasciculatus_F_contig15768.3968.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15768.3968.1 vs. uniprot
Match: A0A6H5KT89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT89_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.650e-61
Identity = 120/140 (85.71%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:    1 MRCLSAAIMLLAVADQADGFYCAPGRVGGRASRCSAVSSSRKAPSSAWATRPTANPQGRSRPGYVLQASSTEPRDKDAPEGDKAGAEKKEGA-GGDAEDAVLATPAESRTSLLSKRVAAEGKAANKRAKRMANLSSQLKK 417
            MRCLSAAIMLLAVADQADGFYCAPG++GGRASRCSAVSSSRKA SS W+TRPT   QGRSR GYVLQASSTEPRDKDAPEGDK GAEKK+G  GG AEDA LATPAESRT+LLSKRVA EGK AN+RAKRMANLSSQLK+
Sbjct:   16 MRCLSAAIMLLAVADQADGFYCAPGQIGGRASRCSAVSSSRKASSSTWSTRPTTPSQGRSRSGYVLQASSTEPRDKDAPEGDKVGAEKKKGGEGGGAEDAALATPAESRTALLSKRVAEEGKTANQRAKRMANLSSQLKR 155
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15768.3968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KT89_9PHAE7.650e-6185.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15768contigE-fasciculatus_F_contig15768:215..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009350.1
Exons4
Model size420
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15768.3968.1prot_E-fasciculatus_F_contig15768.3968.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15768 215..2882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928046.5118625-CDS-E-fasciculatus_F_contig15768:214..2621622928046.5118625-CDS-E-fasciculatus_F_contig15768:214..262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 215..262 +
1695995801.9310017-CDS-E-fasciculatus_F_contig15768:214..2621695995801.9310017-CDS-E-fasciculatus_F_contig15768:214..262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 215..262 +
1622928046.5287647-CDS-E-fasciculatus_F_contig15768:586..6641622928046.5287647-CDS-E-fasciculatus_F_contig15768:586..664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 587..664 +
1695995801.9398284-CDS-E-fasciculatus_F_contig15768:586..6641695995801.9398284-CDS-E-fasciculatus_F_contig15768:586..664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 587..664 +
1622928046.5404203-CDS-E-fasciculatus_F_contig15768:1976..20711622928046.5404203-CDS-E-fasciculatus_F_contig15768:1976..2071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 1977..2071 +
1695995801.9498315-CDS-E-fasciculatus_F_contig15768:1976..20711695995801.9498315-CDS-E-fasciculatus_F_contig15768:1976..2071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 1977..2071 +
1622928046.5524175-CDS-E-fasciculatus_F_contig15768:2683..28821622928046.5524175-CDS-E-fasciculatus_F_contig15768:2683..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 2684..2882 +
1695995801.9584734-CDS-E-fasciculatus_F_contig15768:2683..28821695995801.9584734-CDS-E-fasciculatus_F_contig15768:2683..2882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15768 2684..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15768.3968.1

>prot_E-fasciculatus_F_contig15768.3968.1 ID=prot_E-fasciculatus_F_contig15768.3968.1|Name=mRNA_E-fasciculatus_F_contig15768.3968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=140bp
MRCLSAAIMLLAVADQADGFYCAPGRVGGRASRCSAVSSSRKAPSSAWAT
RPTANPQGRSRPGYVLQASSTEPRDKDAPEGDKAGAEKKEGAGGDAEDAV
LATPAESRTSLLSKRVAAEGKAANKRAKRMANLSSQLKK*
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mRNA from alignment at E-fasciculatus_F_contig15768:215..2882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15768.3968.1 ID=mRNA_E-fasciculatus_F_contig15768.3968.1|Name=mRNA_E-fasciculatus_F_contig15768.3968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15768:215..2882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTGTTTGTCGGCGGCGATCATGCTGCTAGCGGTGGCAGACCAGGT
GTGTTGTTGAGCTGCGAATCGCAAGCCAGGTCAGCTCTCCGTATATACGA
TGACCCTGCTATGTCACGTCGCAGCTTTACCAAAGCTCACACGCGTATTG
CTGTTTTCTTTCGAGAGGTAGTAGACACCCCTGGCCCATCTCTCCCTTTG
ACACCCTGTGAGGTCTACGAGTATGCTATTTTGCCAGTTGCCGTCTCGCA
GGCATGCACGTTGGTGATGGTCGTGCATGCACACATGTCACATGTACGGG
CATTGCACACGCCGCGCATACGCGGCCTTACGTCACTGACACACTCTCCC
TGGTCTCGTCCGGCCCACATAGGCGGACGGGTTCTACTGTGCTCCCGGTC
GAGTCGGGGGGAGGGCGTCCCGCTGCAGTGCAGTTTCGAGCTCGAGAAAG
GTGAGTGTTTTCTTGTGTAGTCGTAGAATCATAATCTGTGTCAGCCACAA
GCATGTTTTTGTTGCGTTGAAGTTTTTTTGTGTCGCCGGAAGAACTCCCA
CCTGTTCGCCAACCGTCGGTGTATAACCACGTGCGTGTATACAGCAGTAT
GCCCGAAGGATACTCTGCTGTGTGTGTATGTGTGCAGAGGAAGAGAGAGG
CAGAGCTAGAGGCAGACATACAGGCTAGCGAAGAAGACAAGTCAGGCATA
CTGACATGGGCAACAGACACGGAGAAAGCTGTACAACAAAGCAAAAGAGA
GTTATCTATTGTAGCTCGCGAAAAACACCGCGGATCCACTCGGGGCCCAT
GCTGTATGCTTGAGCTTGAGAACCATTTACCAGCCAATATTGAATCCCGG
ACACCCCGTCGTTCCTTTCAAACACCTGCACAGCAGTTCATGCGCATCCT
GCTGTCAAGTTTTTGGTGCTCACCCATGCTGCAGTTCCCATCCCAACAAG
TGTTTCTTTTTTTCATCAGAAACGTCATGAGACGCGGCGCAAAAAACTTT
CAGCAGGGTCACTTTTTCCCACGGAAATGAGCAGTCGTTGCCTCCGCAGC
CCCGGCCCTTGATGGAATCTAACTAAAACTCCTCCAACTGCCGTGTCAAG
TTTTGGCATTTTTTTGTACACGTTGATGTCGACACACCCCAGTTTAGAGT
ATTCTGTCGAAGTGGACAGCAGCCCCGAAGTTCTCACCCCTACACCCTCC
CCAACAAGTCGGAGGTAACTTTACCCTTAAACAATATTGCGTGTATGAGG
GGGTTGCGGCCAGGTAAAGCGCAGGCGTGTTCATCTGCTATCTTCTTACG
AGGTAGATCATCGCTGGAGCACTGTGCTCACCTGCTACCCTGCTGCGATT
TAGATCATCGCCATAGGCGCTGTGTTCACCTGATATCCTCCTACGCCTTT
GATACTCGCTGGAGCGAGCGTCTGAGGGCGGATCCCAACATTCACCAAGC
TTTCATCCTACCTGTGCTTATGCCCCTCACTACTACTATCATGTGGTACA
AAACCGCTTCCGTGTCAGTCACAAGCCAGAAATATTCTTGCGAAAGCCAC
CTTGATTGACACATTGTCCTCCTAGTGTTTGCTCTTCCAATTTGCAGACC
GCCTTCGAGACAACTCCTCACCCTACCCATAGTCGCTGCAGCCGGCAACA
ACGAATGGGGATAGATACGGAAAACGGCGCGACATGGACGGTTAAACTTT
TCACCTGTAGTTGATCGTGACGGCGCCAGCTTCGCTTGCATGCGCGTTTG
TCCGTATGACAGGCACCATCGTCCGCATGGGCTACTCGCCCGACCGCGAA
TCCACAAGGCCGCAGCCGGCCCGGCTACGTCCTGCAAGCGTCCAGCACAG
AGCCGAGGTATTGGCAGATTCCGTGCATCACTTGCGTACCGTATTTTCTA
CTGTATACCGCGCCCTCCCGGGACGCACCGGTTGTGCGCCTGAGTTCTTT
GCGGGAAGGTGCAACAACTGCAGAACACAGCAGCCGTAAACCCCTTTTCT
TGGGGTGTTGCTTGAGAGCATTAGTGGTGGGAGAGACGAGGAACTGGGCA
GAGTCCAGGACGAGTTTCTGTGTAGACAGCAACAGTAGCATCAAGTGTGT
TATCGGAAAGTTTATCGACAAGATCTCCCCCGCCTTGGACATGTGCATCG
GCACATCTCCTTGCATATTTGCAAGACGTTCAGGCGATCTCCCAAGGCTT
GTGTGAGTACTACACGAACTACACGAACACTTTGTTCGTGGAATAACAAT
TTGTCGACCCCCCCCCCCGCACGCGACGGCTGTTTCGATCGTCGGGTCGG
GTGTTGTGGGACCCTACGAGGGCTATTCGAATAGTTCCACGCACGCGAAC
TCTGGGCAGTTTTGCATGTGGACACCTAGATAGCCCGATGTGGAAACCCC
CCGCCCCCCCCGCTAGGAACCTAATAATTTTTACCGTTTGGTCGGCTCGA
TTTGGTCGTGTTCTTCAAGGGACAAAGACGCGCCTGAGGGAGACAAAGCG
GGGGCGGAGAAGAAGGAGGGGGCGGGGGGAGATGCCGAGGACGCAGTCTT
GGCGACGCCAGCGGAGTCGCGCACCTCCCTCCTGAGCAAGAGGGTCGCGG
CGGAGGGGAAGGCGGCCAACAAGAGAGCCAAGCGGATGGCTAACCTTAGC
AGCCAGCTCAAGAAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15768:215..2882+

>mRNA_E-fasciculatus_F_contig15768.3968.1 ID=mRNA_E-fasciculatus_F_contig15768.3968.1|Name=mRNA_E-fasciculatus_F_contig15768.3968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15768:215..2882+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGTGTTTGTCGGCGGCGATCATGCTGCTAGCGGTGGCAGACCAGAT
GCGGTGTTTGTCGGCGGCGATCATGCTGCTAGCGGTGGCAGACCAGGCGG
ACGGGTTCTACTGTGCTCCCGGTCGAGTCGGGGGGAGGGCGTCCCGCTGC
AGTGCAGTTTCGAGCTCGAGAAAGGCGGACGGGTTCTACTGTGCTCCCGG
TCGAGTCGGGGGGAGGGCGTCCCGCTGCAGTGCAGTTTCGAGCTCGAGAA
AGGCACCATCGTCCGCATGGGCTACTCGCCCGACCGCGAATCCACAAGGC
CGCAGCCGGCCCGGCTACGTCCTGCAAGCGTCCAGCACAGAGCCGAGGCA
CCATCGTCCGCATGGGCTACTCGCCCGACCGCGAATCCACAAGGCCGCAG
CCGGCCCGGCTACGTCCTGCAAGCGTCCAGCACAGAGCCGAGGGACAAAG
ACGCGCCTGAGGGAGACAAAGCGGGGGCGGAGAAGAAGGAGGGGGCGGGG
GGAGATGCCGAGGACGCAGTCTTGGCGACGCCAGCGGAGTCGCGCACCTC
CCTCCTGAGCAAGAGGGTCGCGGCGGAGGGGAAGGCGGCCAACAAGAGAG
CCAAGCGGATGGCTAACCTTAGCAGCCAGCTCAAGAAGTGAGGACAAAGA
CGCGCCTGAGGGAGACAAAGCGGGGGCGGAGAAGAAGGAGGGGGCGGGGG
GAGATGCCGAGGACGCAGTCTTGGCGACGCCAGCGGAGTCGCGCACCTCC
CTCCTGAGCAAGAGGGTCGCGGCGGAGGGGAAGGCGGCCAACAAGAGAGC
CAAGCGGATGGCTAACCTTAGCAGCCAGCTCAAGAAGTGA
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