mRNA_E-fasciculatus_F_contig15724.3955.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15724.3955.1
Unique NamemRNA_E-fasciculatus_F_contig15724.3955.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A6H5KMJ2_9PHAE (15-cis-phytoene synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ2_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 9.650e-159
Identity = 225/234 (96.15%), Postives = 231/234 (98.72%), Query Frame = 1 
Query:    1 VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            +  WATRLDNVWEGKPRD+LDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTA+GVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYK+LMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKIL+AIE NNYDNFRKRAYISKTEKLLTLPFSYAKSLNPG+INT
Sbjct:  229 LTDWATRLDNVWEGKPRDALDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTADGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKDLMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILTAIEGNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGEINT 462
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: D7FT46_ECTSI (15-cis-phytoene synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT46_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 4.760e-158
Identity = 225/234 (96.15%), Postives = 231/234 (98.72%), Query Frame = 1 
Query:    1 VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            +  WATRL+NVWEGKP+D+LDLALVDVRENYP+LPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKIL+AIE NNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT
Sbjct:  255 LTDWATRLENVWEGKPKDALDLALVDVRENYPSLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILTAIEGNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 488
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AH03_9PHAE (15-cis-phytoene synthase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A2D2AH03_9PHAE)

HSP 1 Score: 453 bits (1166), Expect = 5.330e-157
Identity = 223/234 (95.30%), Postives = 228/234 (97.44%), Query Frame = 1 
Query:    1 VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            +  WA RLD+VW GKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELM+YQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKIL+AIE N YDNFRKRAYISKTEKLLTLPFSYAKSLNPGQ+NT
Sbjct:  233 LTDWAVRLDDVWRGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMKYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILTAIEANGYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQVNT 466
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AH06_UNDPI (15-cis-phytoene synthase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A2D2AH06_UNDPI)

HSP 1 Score: 446 bits (1147), Expect = 1.720e-154
Identity = 219/231 (94.81%), Postives = 229/231 (99.13%), Query Frame = 1 
Query:   10 WATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            WA RLD+V++GKPRDSLDLALVDVRENYP+LPIAPFKDMIDGM+MDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKIL+AIE+NN+DNFRKRAYISKTEKLLTLPFSY KSLNPG++NT
Sbjct:  210 WAVRLDDVFKGKPRDSLDLALVDVRENYPSLPIAPFKDMIDGMVMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILTAIESNNFDNFRKRAYISKTEKLLTLPFSYLKSLNPGKVNT 440
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AH33_SCYLO (15-cis-phytoene synthase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A2D2AH33_SCYLO)

HSP 1 Score: 447 bits (1150), Expect = 1.740e-154
Identity = 220/234 (94.02%), Postives = 227/234 (97.01%), Query Frame = 1 
Query:    1 VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            +  WA RLD+VW+GKP DSLDLALVDVRENYP+LPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDL KFGV+PENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKIL+AIE N YDNFRKRAYISKTEKLLTLPFSYAKSLNPGQ+NT
Sbjct:  239 LTDWAARLDDVWKGKPTDSLDLALVDVRENYPSLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLAKFGVEPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILTAIEANGYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQVNT 472
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AGZ4_9PHAE (15-cis-phytoene synthase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A2D2AGZ4_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 7.290e-151
Identity = 213/230 (92.61%), Postives = 225/230 (97.83%), Query Frame = 1 
Query:   10 WATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQIN 699
            WA RLD+VWEGKPRDSLDLALVDVR+ YP+LPIAPFKDMIDGM+MDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTA+GV+EEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPL+DLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLS +GRL VQASLDMYGKIL+AIE NNYDNFRKRAYISKTEKLLTLPFSYAKS+NPG+I+
Sbjct:  186 WAVRLDDVWEGKPRDSLDLALVDVRQKYPSLPIAPFKDMIDGMVMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTADGVTEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLQDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSSQGRLAVQASLDMYGKILTAIEANNYDNFRKRAYISKTEKLLTLPFSYAKSINPGKID 415
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AGZ2_9PHAE (15-cis-phytoene synthase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A2D2AGZ2_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 8.840e-146
Identity = 203/231 (87.88%), Postives = 220/231 (95.24%), Query Frame = 1 
Query:   10 WATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT 702
            W  RL  VWEGKPRD+LDLA+VDVR+NYP+LPIAPFKDMIDGM+MDVPGIGKNRY TFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLP+EDLE+FG+DPENIMNGILD+NYK +M+YQIARARFYYKQAARGIPML+PE RLPVQASLDMYGKIL AIE N+YDNFRKRAYISKTEKLLTLP S+ +SLNPGQ++T
Sbjct:  191 WTNRLQEVWEGKPRDALDLAMVDVRQNYPSLPIAPFKDMIDGMVMDVPGIGKNRYSTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPMEDLERFGIDPENIMNGILDANYKAMMKYQIARARFYYKQAARGIPMLAPESRLPVQASLDMYGKILEAIEANDYDNFRKRAYISKTEKLLTLPLSWWRSLNPGQVDT 421
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BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AH04_9PHAE (15-cis-phytoene synthase n=5 Tax=Sargassum TaxID=3015 RepID=A0A2D2AH04_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 2.140e-142
Identity = 200/230 (86.96%), Postives = 218/230 (94.78%), Query Frame = 1 
Query:   10 WATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQIN 699
            W++RL++VW GKPRDSLDLALVDVRE YPTLPI PFKDMIDGM+MDVPGIGKNRY+TFEELELYCYRVAGTVGLMVLP+LGTA GVSEEDAK+PALSLGIALQLTNILRDVGEDAVRGRIYLPLED++KFGVDPENIMNGILD NYK+ MRYQIARARFYY+QAARGIPML+P+ RLPVQASLDMYGKIL  IE+NNYDNFR RAYISK EKLLTLPFSY +SLNPG+I+
Sbjct:  230 WSSRLEDVWAGKPRDSLDLALVDVREIYPTLPIEPFKDMIDGMVMDVPGIGKNRYETFEELELYCYRVAGTVGLMVLPVLGTAPGVSEEDAKYPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDMKKFGVDPENIMNGILDENYKKFMRYQIARARFYYQQAARGIPMLAPQARLPVQASLDMYGKILDVIESNNYDNFRNRAYISKVEKLLTLPFSYLRSLNPGKID 459
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A2D2AH02_9PHAE (15-cis-phytoene synthase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A2D2AH02_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 1.330e-137
Identity = 195/232 (84.05%), Postives = 215/232 (92.67%), Query Frame = 1 
Query:    1 VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQI 696
            +  W  RL++VW GKPRD+LDLALVDVRE+YP+LPIAPFKDMIDGM+MDVPGIGKNRYQTF+ELELYCYRVAGTVGLM LPIL TAEGVS+EDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLE+FGVDPENIMNGILDSNYK LM++QI+RARFYYKQA RGIPML+ E RLPVQASLDMY KIL AIETN+YDNFRKRAY SKTEKLLTLP S+ +S+N G++
Sbjct:  181 LADWTVRLEDVWRGKPRDALDLALVDVRESYPSLPIAPFKDMIDGMVMDVPGIGKNRYQTFKELELYCYRVAGTVGLMTLPILKTAEGVSQEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLERFGVDPENIMNGILDSNYKALMKFQISRARFYYKQAQRGIPMLAAESRLPVQASLDMYSKILRAIETNDYDNFRKRAYTSKTEKLLTLPLSWWRSVNVGKV 412
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Match: A0A835ZE11_9STRA (15-cis-phytoene synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE11_9STRA)

HSP 1 Score: 347 bits (889), Expect = 1.220e-116
Identity = 165/230 (71.74%), Postives = 198/230 (86.09%), Query Frame = 1 
Query:   10 WATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDVPGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALSLGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYKELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNNYDNFRKRAYISKTEKLLTLPFSYAKSLNPGQIN 699
            W  RL+ ++EGK  D+LDLALVD ++ YPTL I PFKDMI GM++DVPG GK RY TF ELE YCYRVAGTVGLM LP+LGTA+G++EE AK PALSLGIALQLTNILRDVGEDAVRGRIYLP EDL++FGV  ++IMNGILD NY++LM +QIARAR+YY +AA+G+PML+PE RLPVQASLDMYG+IL+AIE N YDNFRKRAY+SKT+KLLTLP S+ +S+ P  ++
Sbjct:  121 WTQRLEGIFEGKGLDALDLALVDAKQRYPTLSIRPFKDMIGGMLLDVPGAGKQRYATFSELEEYCYRVAGTVGLMTLPVLGTAKGITEEQAKEPALSLGIALQLTNILRDVGEDAVRGRIYLPQEDLQRFGVPEDHIMNGILDDNYRKLMAFQIARARYYYAKAAKGVPMLAPESRLPVQASLDMYGRILTAIEENGYDNFRKRAYVSKTQKLLTLPLSWWRSVTPPPLD 350
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15724.3955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMJ2_9PHAE9.650e-15996.1515-cis-phytoene synthase n=1 Tax=Ectocarpus sp. CC... [more]
D7FT46_ECTSI4.760e-15896.1515-cis-phytoene synthase n=1 Tax=Ectocarpus silicu... [more]
A0A2D2AH03_9PHAE5.330e-15795.3015-cis-phytoene synthase n=1 Tax=Punctaria latifol... [more]
A0A2D2AH06_UNDPI1.720e-15494.8115-cis-phytoene synthase n=1 Tax=Undaria pinnatifi... [more]
A0A2D2AH33_SCYLO1.740e-15494.0215-cis-phytoene synthase n=1 Tax=Scytosiphon lomen... [more]
A0A2D2AGZ4_9PHAE7.290e-15192.6115-cis-phytoene synthase n=1 Tax=Desmarestia virid... [more]
A0A2D2AGZ2_9PHAE8.840e-14687.8815-cis-phytoene synthase n=1 Tax=Ishige okamurae T... [more]
A0A2D2AH04_9PHAE2.140e-14286.9615-cis-phytoene synthase n=5 Tax=Sargassum TaxID=3... [more]
A0A2D2AH02_9PHAE1.330e-13784.0515-cis-phytoene synthase n=1 Tax=Dictyopteris undu... [more]
A0A835ZE11_9STRA1.220e-11671.7415-cis-phytoene synthase n=1 Tax=Tribonema minus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15724contigE-fasciculatus_F_contig15724:121..2634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue5.4e-127
Seed eggNOG ortholog2880.D7FT46
Preferred namePSY1
KEGG rclassRC00362,RC00438,RC00439,RC00603,RC00604,RC01004,RC01101,RC02869
KEGG koko:K01623,ko:K02291,ko:K17841
KEGG ReactionR01068,R01070,R01829,R02065,R02568,R03824,R04218,R05341,R07270,R10177,R10508
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko00906,ko01062,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map00906,map01062,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00097,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016740,GO:0016765,GO:0016767,GO:0016853,GO:0016860,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0046246,GO:0046905,GO:0071704,GO:1901576
EggNOG free text desc.farnesyl-diphosphate farnesyltransferase activity
EggNOG OGsCOG1562@1,KOG1459@2759
EC2.5.1.32,2.5.1.99,4.1.2.13,5.5.1.19
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhytoene synthase; chloroplast precursor
Ec32 orthologEc-04_002810.1
Exons4
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15724.3955.1prot_E-fasciculatus_F_contig15724.3955.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15724 121..2634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.70269-CDS-E-fasciculatus_F_contig15724:120..2731622928043.70269-CDS-E-fasciculatus_F_contig15724:120..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 121..273 -
1695995801.1894104-CDS-E-fasciculatus_F_contig15724:120..2731695995801.1894104-CDS-E-fasciculatus_F_contig15724:120..273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 121..273 -
1622928043.7179992-CDS-E-fasciculatus_F_contig15724:841..10061622928043.7179992-CDS-E-fasciculatus_F_contig15724:841..1006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 842..1006 -
1695995801.2004216-CDS-E-fasciculatus_F_contig15724:841..10061695995801.2004216-CDS-E-fasciculatus_F_contig15724:841..1006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 842..1006 -
1622928043.7285795-CDS-E-fasciculatus_F_contig15724:1885..21491622928043.7285795-CDS-E-fasciculatus_F_contig15724:1885..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 1886..2149 -
1695995801.2086651-CDS-E-fasciculatus_F_contig15724:1885..21491695995801.2086651-CDS-E-fasciculatus_F_contig15724:1885..2149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 1886..2149 -
1622928043.73936-CDS-E-fasciculatus_F_contig15724:2514..26341622928043.73936-CDS-E-fasciculatus_F_contig15724:2514..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 2515..2634 -
1695995801.2189655-CDS-E-fasciculatus_F_contig15724:2514..26341695995801.2189655-CDS-E-fasciculatus_F_contig15724:2514..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15724 2515..2634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15724.3955.1

>prot_E-fasciculatus_F_contig15724.3955.1 ID=prot_E-fasciculatus_F_contig15724.3955.1|Name=mRNA_E-fasciculatus_F_contig15724.3955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=234bp
VVQWATRLDNVWEGKPRDSLDLALVDVRENYPTLPIAPFKDMIDGMIMDV
PGIGKNRYQTFEELELYCYRVAGTVGLMVLPILGTAEGVSEEDAKFPALS
LGIALQLTNILRDVGEDAVRGRIYLPLEDLEKFGVDPENIMNGILDSNYK
ELMRYQIARARFYYKQAARGIPMLSPEGRLPVQASLDMYGKILSAIETNN
YDNFRKRAYISKTEKLLTLPFSYAKSLNPGQINT
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mRNA from alignment at E-fasciculatus_F_contig15724:121..2634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15724.3955.1 ID=mRNA_E-fasciculatus_F_contig15724.3955.1|Name=mRNA_E-fasciculatus_F_contig15724.3955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2514bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15724:121..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGTGCAGTGGGCGACTCGGCTGGACAACGTGTGGGAGGGCAAGCCCAG
GGACTCGTTGGACCTGGCTCTGGTCGACGTGAGGGAGAACTACCCCACCC
TTCCCATCGCTCCGTTTAAGGTGCGGGCGACACGCTCCGTTGAAGGGCGT
ACGGCAGTATCGATGTGGTGAATGTTGGAATCATGGATGCGTACAGCAAG
AGAATCGACCAGACTCTTTGCTTATTGGAGCTTAACTGCGACGCCAAGAA
GAGCACCAGTGTTTACAAGCACTCTTTTTATTGCTCTCTGAATACTTGCC
CACCTATCGTACTTTCCGCCGACCCGAACTCGGCTTTTTCATCACGGCAT
ACCTATCTCCCACTCACGCGGGACACGATCGACGGCATTGCTCTCTGAAT
GATTCACCCACCTATCGTACTTTTGTGCCTACTCCACTTGGTTTGTTTAA
ATCACGCCTTCCACGTACCTCTCACTGCACCGCAGGACATGATCGACGGC
ATGATCATGGACGTGCCCGGGATCGGCAAGAACCGCTACCAGACCTTCGA
GGAGCTCGAGCTCTACTGCTACCGTGTGGCGGGCACGGTGGGGCTGATGG
TGCTGCCCATCCTGGGGACCGCGGAGGGGGTGTCCGAGGAGGACGCCAAG
TTTCCGGCGCTGTCCCTGGGCATCGCGCTGCAGCTCACCAACATCCTGCG
GGACGTAGGGGAGGATGCCGTTCGGGGACGCATCTACCTTCCGCTTGAGG
TGCGCTGTGGGTTGGTGTTGAATGTAATTTTTGGGGGGGAGGGAGGGGGG
AAGGCGTACTCATGTTTTGCATACCTTAGTGGTCAGACCATTGACAGGGG
GGAAGGTGTACTCATGTTTTGCATGCCTTAGTTGGTTGGACCATTAGCAT
GTAGAGGGGGGTGTACTGATGATTTTGCATGCCTTAGTGGTCAGACCATT
GGCCTCGCATGCATCCCTACAACGCCGGGACCGAGCACGCAGGGTTCTCA
ACGGACTAGGCTCGCACATCACAAGCGCGAAGCGCCATTATTATGGGGTG
CGTTTCCTAACCTTCCTACTGGAGTTTTTTTTTTTTTTTATCGTTCTTGT
CTAACCTTTCCCGTTATGAGATGAGATAGAGGTGAAAAGGGATGCTCAAA
AGCAGGACACGAAAGTAGTGGCGGCTAAATAATCCTTTGCGCGTTGTGCC
ACCTACCACAGCTGTTGCCCCAGAAAGGGAGCAGGTGTACAACCAGGGCG
TAGAAGAAGGAAAGAAATAGAACGCAACGCTGCGTCCTTTCGTCCTTTTG
TTTTCCTTCTTGTATGCCTTGCTTGCACACCCGCCCGGTTGCTGGAGCAA
CAGCAGTAGTCAATTGCGGCTAAACGTGCAAAGGATCAGCCGCCGCCACT
ACTTTCGCGTCCTGCTTGAGAACAGCCCTTTCCACCTCGATCTTGTTTAT
GTTCTTTTTCTAGTTTTTCGGGGGGGGGGTTTCCCCTCCACATGAAAATT
GGAGCAAACCAAAAGAGGTTTCGCCGTGGCAACAACCCGACAACCCCATA
AGAACCGATGTTGGGACATGCTTCCATACATCCGCAAACCCTTTCTTTCT
CTCCCCCCCTCTTTGGCTTTGCAACCAGGACCTGGAAAAGTTCGGCGTAG
ATCCCGAGAACATCATGAACGGCATCCTGGACTCCAACTACAAGGAGCTC
ATGCGCTACCAGATCGCCCGCGCGAGATTCTACTACAAGCAGGCGGCGCG
GGGAATCCCCATGCTGTCCCCGGAGGGACGCCTGCCCGTGCAGGTGACAT
CTTGTTTTTTTGCAATGCGGAACGCGGGAAATTCCTCCATCTTTGTCGTC
GCCAGAGCATTTGTTTCATTAATTGTTGCCAGAGAGTAGTGTGAAGAAAT
GCTGCAACATCGATTGTGTACGAAATGCCGCTCAGAACACTTTTTTTTAT
TCTCTCTTTTGAGAACAGGCCGTGTGCTGCTTGCTCTGTGCTACGGCTTG
TGCGTCCAGTGCTGCGCGGCCATTGCTTGCTGCTGTTTCAAGCTCTGTGC
GCTGTACACTACGTACCTTTGGTGTCTGCTTTGCGTGGGCGCTGTTTGGT
GTTGTTTCGTCTCAGGTTCGGTACCTCGGGTGTCTAATCTCGCCCTTGGT
GCACGCCTCAGTAGCCCAATTCGTATGCCAGAAACAACAACAACAACAAC
AGCAGCAATACCGAATGATGCCGAGGCCGCCACTCGCCTGCTGCGCGGTT
GTAGGCAAGCCTGTTTCATCACGTCACTTTCAGCTCGTACACCCGGTTCA
CCCATCCATGGCCTCCACACGTGCGGGCTTTGTTGTCTTTTGTTTTTGTT
TCGAAACTCAGGCGTCTCTGGACATGTACGGTAAGATTCTGTCGGCGATC
GAGACCAACAACTACGACAACTTCCGCAAGCGCGCGTACATCTCCAAGAC
CGAGAAGCTGCTGACCCTGCCCTTCTCGTACGCCAAGTCCCTCAATCCGG
GCCAGATCAACACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15724:121..2634-

>mRNA_E-fasciculatus_F_contig15724.3955.1 ID=mRNA_E-fasciculatus_F_contig15724.3955.1|Name=mRNA_E-fasciculatus_F_contig15724.3955.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15724:121..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGTGCAGTGGGCGACTCGGCTGGACAACGTGTGGGAGGGCAAGCCCAG
GGACTCGTTGGACCTGGCTCTGGTCGACGTGAGGGAGAACTACCCCACCC
TTCCCATCGCTCCGTTTAAGGTCGTGCAGTGGGCGACTCGGCTGGACAAC
GTGTGGGAGGGCAAGCCCAGGGACTCGTTGGACCTGGCTCTGGTCGACGT
GAGGGAGAACTACCCCACCCTTCCCATCGCTCCGTTTAAGGACATGATCG
ACGGCATGATCATGGACGTGCCCGGGATCGGCAAGAACCGCTACCAGACC
TTCGAGGAGCTCGAGCTCTACTGCTACCGTGTGGCGGGCACGGTGGGGCT
GATGGTGCTGCCCATCCTGGGGACCGCGGAGGGGGTGTCCGAGGAGGACG
CCAAGTTTCCGGCGCTGTCCCTGGGCATCGCGCTGCAGCTCACCAACATC
CTGCGGGACGTAGGGGAGGATGCCGTTCGGGGACGCATCTACCTTCCGCT
TGAGGACATGATCGACGGCATGATCATGGACGTGCCCGGGATCGGCAAGA
ACCGCTACCAGACCTTCGAGGAGCTCGAGCTCTACTGCTACCGTGTGGCG
GGCACGGTGGGGCTGATGGTGCTGCCCATCCTGGGGACCGCGGAGGGGGT
GTCCGAGGAGGACGCCAAGTTTCCGGCGCTGTCCCTGGGCATCGCGCTGC
AGCTCACCAACATCCTGCGGGACGTAGGGGAGGATGCCGTTCGGGGACGC
ATCTACCTTCCGCTTGAGGACCTGGAAAAGTTCGGCGTAGATCCCGAGAA
CATCATGAACGGCATCCTGGACTCCAACTACAAGGAGCTCATGCGCTACC
AGATCGCCCGCGCGAGATTCTACTACAAGCAGGCGGCGCGGGGAATCCCC
ATGCTGTCCCCGGAGGGACGCCTGCCCGTGCAGGACCTGGAAAAGTTCGG
CGTAGATCCCGAGAACATCATGAACGGCATCCTGGACTCCAACTACAAGG
AGCTCATGCGCTACCAGATCGCCCGCGCGAGATTCTACTACAAGCAGGCG
GCGCGGGGAATCCCCATGCTGTCCCCGGAGGGACGCCTGCCCGTGCAGGC
GTCTCTGGACATGTACGGTAAGATTCTGTCGGCGATCGAGACCAACAACT
ACGACAACTTCCGCAAGCGCGCGTACATCTCCAAGACCGAGAAGCTGCTG
ACCCTGCCCTTCTCGTACGCCAAGTCCCTCAATCCGGGCCAGATCAACAC
GGCGTCTCTGGACATGTACGGTAAGATTCTGTCGGCGATCGAGACCAACA
ACTACGACAACTTCCGCAAGCGCGCGTACATCTCCAAGACCGAGAAGCTG
CTGACCCTGCCCTTCTCGTACGCCAAGTCCCTCAATCCGGGCCAGATCAA
CACG
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