mRNA_E-fasciculatus_F_contig15720.3953.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15720.3953.1
Unique NamemRNA_E-fasciculatus_F_contig15720.3953.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15720.3953.1 vs. uniprot
Match: A0A6H5L4Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-14
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:  159 MASQKDPRWPRLLSRPRD-NSSTQQQHGKPGAAGLS-GPDATATTTGRTPISPGRARAHGTDRDTS 350
            MAS KDPRWPRLL RP+  N +TQQ+H K GA   S GPDATAT+ GRTPISPG ARA+GTDR+TS
Sbjct:    1 MASSKDPRWPRLLPRPQGRNKTTQQEHQKLGAVEQSSGPDATATSPGRTPISPGCARANGTDRNTS 66
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BLAST of mRNA_E-fasciculatus_F_contig15720.3953.1 vs. uniprot
Match: D7FLR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-9
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  159 MASQKDPRWPRLLSRPRD-NSSTQQQHGKPGAAGLS-GPDATATTTGRTPISPGRARAHGTDRDTS 350
            MAS KDPRWPRLL RP+D N +TQQ+H K GA GLS GPDATA            ARA+GTDRDTS
Sbjct:    1 MASSKDPRWPRLLPRPQDKNKTTQQEHQKLGAPGLSSGPDATAXXXXXXXXXXXCARANGTDRDTS 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15720.3953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4Z9_9PHAE2.560e-1471.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLR9_ECTSI1.350e-963.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15720contigE-fasciculatus_F_contig15720:1645..2701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size350
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15720.3953.1prot_E-fasciculatus_F_contig15720.3953.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15720 1645..1836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.6060557-CDS-E-fasciculatus_F_contig15720:1644..18361622928043.6060557-CDS-E-fasciculatus_F_contig15720:1644..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 1645..1836 -
1695995801.1515784-CDS-E-fasciculatus_F_contig15720:1644..18361695995801.1515784-CDS-E-fasciculatus_F_contig15720:1644..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15720 1645..1836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.6197693-UTR-E-fasciculatus_F_contig15720:1836..18941622928043.6197693-UTR-E-fasciculatus_F_contig15720:1836..1894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15720 1837..1894 -
1695995801.1598587-UTR-E-fasciculatus_F_contig15720:1836..18941695995801.1598587-UTR-E-fasciculatus_F_contig15720:1836..1894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15720 1837..1894 -
1622928043.6308682-UTR-E-fasciculatus_F_contig15720:2601..27011622928043.6308682-UTR-E-fasciculatus_F_contig15720:2601..2701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15720 2602..2701 -
1695995801.1681602-UTR-E-fasciculatus_F_contig15720:2601..27011695995801.1681602-UTR-E-fasciculatus_F_contig15720:2601..2701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15720 2602..2701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15720.3953.1

>prot_E-fasciculatus_F_contig15720.3953.1 ID=prot_E-fasciculatus_F_contig15720.3953.1|Name=mRNA_E-fasciculatus_F_contig15720.3953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
MASQKDPRWPRLLSRPRDNSSTQQQHGKPGAAGLSGPDATATTTGRTPIS
PGRARAHGTDRDTS
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mRNA from alignment at E-fasciculatus_F_contig15720:1645..2701-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15720.3953.1 ID=mRNA_E-fasciculatus_F_contig15720.3953.1|Name=mRNA_E-fasciculatus_F_contig15720.3953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1057bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15720:1645..2701- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTGCGGCTGTGGATCCAAGCATAATTTTCGGTGTCGATTTGAGAAGAGA
GCGAGAGCGAAGCACTGCTGGACTATCATCTACCTCTGCCATCCCAGCCG
GTGAGCACAGTACACAGTGGGCGATTTGTGTGGTGCCCTCAGCACGCCGT
GTTTATTGTGATGGTCGGGGGGGGCGTGGGGACTGCTGTTTGGTCCAAAC
AAAGCTCAAGGTTTCTCATGATTGCACCAACGGCCCAGCAGCAGACGTCG
ATACATCAGTCGAAAGTCGAAAGTCAACCCGCGACAGCAGTAGCTCGATG
AACATCAACCCACGCTCTCGTTCGCAGCTAGGTCGATGTGCGGTGACTGC
CTGTGTCCTGTGTCCCGTACACGTTACCTGAAATGTACACCGTGCTGTGC
GCCATCAGGACTGCAGCTGTACCCTGTTGGACAAAGGATGTTGCTGAGAC
CATGTACGCACGCAGTGTACTCTATTATAGACTGAACGGACCTGTTCCAA
GATCGAATCCTGAGCCCAGAGAGCCTGCAGAACAATAGTCCACCATGTTG
TTTTGGTTGATGTCATGCGCAATTGGGCATCGAGAGAGATCTCTACGGCA
AAAGTGCGTCGCAGAATGAAGCATTGTGTGTCGCGCCATCAAGCAGCAGT
AACATGCACCATCTCATCTCATCTGAACCTTATCTTATCTTATATTTTCT
TATCTTATCTTACAATTAATCTTCATCACAACAACGGCCTCCCCTCCCTT
GGCTTGTTTCTATTTTCCCGCCCTCGCTGTTTTTCGTCCTTCCGTGTATA
ACCATAGACTTGAATAAATAGTGGCCTGGCAGGAACAAGGCTAGACGTTC
GTAAACAGGCCGGAGATGGCGTCACAGAAGGACCCGCGTTGGCCACGCCT
GCTATCACGCCCTCGAGACAACAGCTCCACCCAGCAGCAGCACGGGAAAC
CGGGAGCGGCGGGACTTTCAGGACCGGACGCCACAGCTACAACCACCGGG
AGGACCCCGATATCGCCGGGCCGTGCGCGGGCTCACGGTACGGACCGCGA
CACGTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15720:1645..2701-

>mRNA_E-fasciculatus_F_contig15720.3953.1 ID=mRNA_E-fasciculatus_F_contig15720.3953.1|Name=mRNA_E-fasciculatus_F_contig15720.3953.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15720:1645..2701- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTCACAGAAGGACCCGCGTTGGCCACGCCTGCTATCACGCCCTCG
AGACAACAGCTCCACCCAGCAGCAGCACGGGAAACCGGGAGCGGCGGGAC
TTTCAGGACCGGACGCCACAGCTACAACCACCGGGAGGACCCCGATATCG
CCGGGCCGTGCGCGGGCTCACGGTACGGACCGCGACACGTCCATGGCGTC
ACAGAAGGACCCGCGTTGGCCACGCCTGCTATCACGCCCTCGAGACAACA
GCTCCACCCAGCAGCAGCACGGGAAACCGGGAGCGGCGGGACTTTCAGGA
CCGGACGCCACAGCTACAACCACCGGGAGGACCCCGATATCGCCGGGCCG
TGCGCGGGCTCACGGTACGGACCGCGACACGTCC
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