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Homology
BLAST of mRNA_E-fasciculatus_F_contig15719.3949.1 vs. uniprot
Match: D7FSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR7_ECTSI) HSP 1 Score: 378 bits (971), Expect = 2.090e-122 Identity = 355/496 (71.57%), Postives = 363/496 (73.19%), Query Frame = 1
Query: 1 GGGGPSLVQWSPVYSNYFAYSSGRERSGIDLYRVSRSIPGGDAELLGPRSSVTDRRSXXXXXXXXXXXXMQQGMYRPASTAFYDANAPEGXXXXXXXXXXXXVIAGLSLAAAXXXXGVMDPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADVFGNVPGPENPFAGAGPEYHHHLQQQVPAEGAVG-VVAGVSGSAAAMASAAASRG-AGVVGSNAHSPYGSSGGVVSGGYGNPFAGVDGGGAQGAVGXXXXXXXXXXXXXXXXXXXXXXXTPFRAGVAGTARVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFAGYPLGPRKPSSVYSEQGNSRSVMAAASXXXXXXXXXXXXXSTKREWKYQLEGRSKWWKKPKDGHVTCMSWFPHSETVAGDGMGTGGADIRMLAVGYASGKVSALKLQFRPAQSCCCTCRRG 1482
GG GPSLVQWSPVYSNYFAYSSGRER+GIDLYRVS S+PGGDAEL GPR SV DRR XXXXXX MQQG YR AS FYD NAPEG IAGLSLAAAXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX SADVFGNV GPENPFAGAGPEYHHHLQQQ+PAEGAVG VVAGVSGSA RG AGVVGSNA YG SGGV SGGYGNPFAGVDGGGAQG XXXXXXXXXXXX PFRAGVAGTARVA XXXXXXXXXX XXXXXX X XXXXXX EFAGYPLGPRKPSSVYSEQGN+RSVMAA S ST REWKY LEGRSK WKK KDGHVTCMSWFPHSETV GDGMGTGGADIRMLAVGY+SGK ++ + QSCCC RRG
Sbjct: 35 GGRGPSLVQWSPVYSNYFAYSSGRERNGIDLYRVSWSVPGGDAELPGPRGSVNDRRPSGGDXXXXXX--MQQGTYRAASMTFYDPNAPEGSGGS--------TIAGLSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRRLASGSGXXXXXXXXXXXXXXXXXXXXXXXXXX-------------SADVFGNVSGPENPFAGAGPEYHHHLQQQLPAEGAVGGVVAGVSGSAXXXXXXXXXRGGAGVVGSNAQPSYGGSGGV-SGGYGNPFAGVDGGGAQGXX-----------XXXXXXXXXXXXNMPFRAGVAGTARVATATXXXXXXXXXXLGXXXXXXVDGXMXXXXXXG--EFAGYPLGPRKPSSVYSEQGNARSVMAATSAAAAAG-------STNREWKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMGTGGADIRMLAVGYSSGK-GVVRYRHGGRQSCCCNSRRG 485
BLAST of mRNA_E-fasciculatus_F_contig15719.3949.1 vs. uniprot
Match: A0A6H5KKS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS1_9PHAE) HSP 1 Score: 251 bits (640), Expect = 2.620e-69 Identity = 216/285 (75.79%), Postives = 223/285 (78.25%), Query Frame = 1
Query: 604 SADVFGNVPGPENPFAGAGPEYHHHLQQQVPAEGAVGV-VAGVSGSAAAMASAAASRGAGVVGSNAHSPYGSSGGVVSGGYGNPFAGVDGGGAQGAVGXXXXXXXXXXXXXXXXXXXXXXXTPFRAGVAGTARVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EFAGYPLGPRKPSSVYSEQGNSRSVMAAASXXXXXXXXXXXXXSTKREWKYQLEGRSKWWKKPKDGHVTCMSWFPHSETVAGDGMGTGGADIRMLAVGYASGKVSALKLQFRP 1449
SADVFGNV GPENPFAGAG EYHHHL+QQ+ AEGAVG VAG+SGS SRG VGSNA YG SGGV SGGYGNPFAG DG XXXXXXXXXXXXXXXXXXXXXX PFRAGVAGTARVAXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX EFAGYPLGPRKPSSVYSEQGN+RSVMAA S STKREWKY LEGRSK WKK KDGHVTCMSWFPHSETV GDGMGTG ADIRMLAVGY+SGKV ++ P
Sbjct: 114 SADVFGNVSGPENPFAGAGTEYHHHLKQQLSAEGAVGGGVAGISGSXXXXXXXXXSRGGAGVGSNAQPSYGGSGGV-SGGYGNPFAGGDG------XXXXXXXXXXXXXXXXXXXXXXXXNMPFRAGVAGTARVAXXXXXXXXXXXXXXXXXXXXXXXXXVDXXXXXXXXXXEFAGYPLGPRKPSSVYSEQGNARSVMAATSAAAAAATG-----STKREWKYHLEGRSKRWKKQKDGHVTCMSWFPHSETVGGDGMGTGDADIRMLAVGYSSGKVGLVRFSDEP 386
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-03_002780.1 |
| Exons | 4 |
| Model size | 1588 |
| Cds size | 1317 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15719.3949.1 >prot_E-fasciculatus_F_contig15719.3949.1 ID=prot_E-fasciculatus_F_contig15719.3949.1|Name=mRNA_E-fasciculatus_F_contig15719.3949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=439bp
MQMQQGMYRPASTAFYDANAPEGGGGGGGGGGGGSVIAGLSLAAAAAAAG
VMDPRDPSSAAAAAAAAAAAAAAAGVTAPATVPTVATAGAADAARVRRLA
SGSAGGAAGGGGDGGSVSAFSGGGVGGGGGGGGGSADVFGNVPGPENPFA
GAGPEYHHHLQQQVPAEGAVGVVAGVSGSAAAMASAAASRGAGVVGSNAH
SPYGSSGGVVSGGYGNPFAGVDGGGAQGAVGGGFSQQQQQQQQQQQQQQQ
QQQNTPFRAGVAGTARVAAATIAAASAAPPALGGGGGVVDGGVTGGGGGG
GGGEFAGYPLGPRKPSSVYSEQGNSRSVMAAASMAAAATAAAAAAASTKR
EWKYQLEGRSKWWKKPKDGHVTCMSWFPHSETVAGDGMGTGGADIRMLAV
GYASGKVSALKLQFRPAQSCCCTCRRGSEARVSSLPWS* back to topmRNA from alignment at E-fasciculatus_F_contig15719:3..2944+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15719.3949.1 ID=mRNA_E-fasciculatus_F_contig15719.3949.1|Name=mRNA_E-fasciculatus_F_contig15719.3949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15719:3..2944+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGGGAGGGCCGTCGCTGGTGCAATGGTCACCCGTCTACTCCAACTA
CTTCGCCTACTCCAGCGGGAGAGAGAGGAGCGGCATCGACCTCTACCGTG
TCAGCCGGTCTATTCCGGGGGGGGACGCCGAGCTGCTGGGGCCAAGGAGC
TCCGTGACTGATCGCCGGTCTTCGGGTGGCGGGGACCACCAGCAACAGCA
GATGCAGATGCAGCAAGGGGTGAGAGCGTCGAGCTTATGAGGAGTACGTC
GAGGGCTGGTTCGCGTTAAGTCTTGCGCGGCTTACTTGTGACTTTGTGCT
CACGTGTTTGGCCGCATCGTCCCCTGCATACCCTCGTGAGAGAAACGAAA
GGGGGTATTGTATATCCCACGGATTCCATTCCGACCCCCCCCTTGCCGAT
AGCCTTGCCTGCGAATAGTTACTCCGCTGCTCATGTTGCGTTAGCCTTGC
ATGCATCCGGCCGGCCAGATCAACCCGCTGAAGGCACGCCCTTCTCCCGC
CTACCGCGCGCGAATCATGTGACCTCTACGCCCCCGCCTTCTCCCACCTT
CCATGCCGACGTCACTGCGCACTCACTCGGTTTGTTGGGCGTGGTTATGT
TTGGTTCAAGGATTGAAATGGCATGTGTAGCGCGACGATGATTTGAAGGC
CTGAAGGAGATGGCGAGCAGGCACTGAGCCAGCCCCTCCCCCCCCCTGAG
GCCTTCCTCTGTACCCTGCTATGGCGATGAAACCGCATGCCCGTCCCCTT
CTCCTGGATAACGGTTGTTATCTTTTTGTACTTGCGTGTTGTGTTTGTGG
GCGTGAAAAAAAAAGATGTACCGGCCGGCTTCGACGGCGTTTTACGACGC
AAACGCGCCTGAAGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGGCGGAA
GCGTAATCGCCGGGCTGTCTTTGGCCGCCGCCGCCGCCGCTGCCGGCGTC
ATGGATCCTAGAGACCCCTCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCCGCTGCTGCGGGCGTAACGGCACCCGCGACGGTCCCAACGG
TCGCGACAGCGGGAGCCGCGGACGCCGCCAGGGTGAGGCGGTTGGCCAGC
GGCAGCGCAGGCGGGGCCGCCGGGGGCGGTGGGGACGGGGGATCAGTTTC
GGCATTCTCCGGCGGGGGAGTCGGCGGCGGCGGCGGCGGCGGCGGCGGGA
GTGCCGACGTGTTCGGCAACGTTCCCGGCCCGGAGAACCCGTTCGCGGGC
GCGGGACCCGAATATCACCACCACCTTCAGCAGCAAGTCCCCGCGGAAGG
GGCGGTGGGCGTCGTCGCCGGCGTTAGCGGTAGTGCTGCTGCGATGGCAT
CAGCGGCGGCGTCGCGAGGAGCGGGGGTGGTGGGCTCCAACGCGCATTCG
CCCTACGGCAGCAGCGGCGGCGTGGTGAGCGGGGGATATGGAAACCCTTT
CGCCGGCGTTGACGGGGGCGGGGCTCAGGGCGCGGTGGGCGGGGGCTTCT
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGAACACGCCGTTTCGGGCCGGGGTTGCTGGAACGGCGAGGGTTGC
GGCGGCGACGATAGCTGCCGCTTCCGCCGCCCCTCCAGCGCTTGGCGGCG
GCGGCGGCGTTGTCGATGGAGGAGTGACCGGTGGCGGTGGCGGTGGCGGT
GGGGGGGAGTTCGCGGGGTATCCTCTGGGCCCCCGGAAGCCGTCTTCGGT
GTATTCCGAGCAAGGGAACTCTAGGAGCGTCATGGCGGCGGCATCGATGG
CGGCGGCGGCGACGGCGGCTGCTGCTGCGGCGGCATCGACGAAGCGGGAG
TGGAAGTACCAGCTGGAAGGGAGAAGCAAATGGTGGAAGAAGCCGAAGGT
GATGAACAAACATTTTGTGATCGTTTGTGCTAGCAGACCGTCGTCGATTT
TACACGTTTCCATGCGCCTTCTTGAACCCACCTGCTATGGTTGCTGGGAC
GTATCGCAAACCGCTTTGTTTGGAGCGCGCTTTGTCGCATTTTTCTGTGC
AGATATTGATTGATTTTGTTTTCAGTCTTGATCACCTCGCATAGCGTGTA
TAGGCGAGCCGAGAGTCCTATGCTAGAATATCTGTCGTTGGTTCCTATTG
ACTTGCGGACTCTTGGGTCCATTTTATTTTAGGATACGTTTTTTGGGTAA
GTTAGGCTGTGACCACGGGAATCGACGGCGTCAAGTGTCAGACTAGTACG
GACAGAAGAAGGTACTGGATAGAGAGATCGGAACGGTTATTTAATGTGAA
GACAACAACAACAACAACAACAACAACAACAACAACAACGACCCTGTCCC
GCACGCCTCATCCCTCCAAACGCTGTTCGTTGCGGTTGCTTTGTGGTCGT
CGGGTCGCTTGGGCAGGACGGGCATGTGACTTGCATGAGCTGGTTCCCGC
ACTCGGAGACTGTCGCCGGGGACGGCATGGGAACGGGCGGCGCCGACATC
CGCATGCTCGCCGTCGGCTACGCCAGTGGGAAGGTAAGCGCTTTAAAACT
ACAAGTGCCGCTGCTGGCCGTGAGTTGTTTTTTGTTGTTTGTGTGTTTTG
CTGTGTGCTCGCGGGTTCTCGGTGCCGCTGCTACGGCTGCTGCGGGTGAT
GCTGATACCGTCGTTGGTACTGCTGTGCAAGCGTTTATCTCTGTCGTCTC
TCAAGCAGTCGTCGGCCGTGTTTTTTTTTTTCATGGCGCTTTTTCGCCCG
TAACGACCAGGACGTGTGTCCGTTACCGACATGGCAGAAAGCAGTTTCGT
CCGGCACAGAGCTGTTGTTGCACTTGTCGGCGCGGTAGCGAGGCGCGTGT
TTCTTCACTGCCCTGGTCTTGACGACAGCAGGGGTATCATTTACTCTTAC
ACCAACCAGAACATGTTCCAAGCAGATCTCAACGTCACACCA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15719:3..2944+ >mRNA_E-fasciculatus_F_contig15719.3949.1 ID=mRNA_E-fasciculatus_F_contig15719.3949.1|Name=mRNA_E-fasciculatus_F_contig15719.3949.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2634bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15719:3..2944+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGATGCAGCAAGGGATGCAGATGCAGCAAGGGATGTACCGGCCGGC
TTCGACGGCGTTTTACGACGCAAACGCGCCTGAAGGCGGTGGCGGCGGTG
GCGGCGGTGGCGGCGGCGGAAGCGTAATCGCCGGGCTGTCTTTGGCCGCC
GCCGCCGCCGCTGCCGGCGTCATGGATCCTAGAGACCCCTCGTCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCGGGCGTAACGG
CACCCGCGACGGTCCCAACGGTCGCGACAGCGGGAGCCGCGGACGCCGCC
AGGGTGAGGCGGTTGGCCAGCGGCAGCGCAGGCGGGGCCGCCGGGGGCGG
TGGGGACGGGGGATCAGTTTCGGCATTCTCCGGCGGGGGAGTCGGCGGCG
GCGGCGGCGGCGGCGGCGGGAGTGCCGACGTGTTCGGCAACGTTCCCGGC
CCGGAGAACCCGTTCGCGGGCGCGGGACCCGAATATCACCACCACCTTCA
GCAGCAAGTCCCCGCGGAAGGGGCGGTGGGCGTCGTCGCCGGCGTTAGCG
GTAGTGCTGCTGCGATGGCATCAGCGGCGGCGTCGCGAGGAGCGGGGGTG
GTGGGCTCCAACGCGCATTCGCCCTACGGCAGCAGCGGCGGCGTGGTGAG
CGGGGGATATGGAAACCCTTTCGCCGGCGTTGACGGGGGCGGGGCTCAGG
GCGCGGTGGGCGGGGGCTTCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAACACGCCGTTTCGGGCCGGGGT
TGCTGGAACGGCGAGGGTTGCGGCGGCGACGATAGCTGCCGCTTCCGCCG
CCCCTCCAGCGCTTGGCGGCGGCGGCGGCGTTGTCGATGGAGGAGTGACC
GGTGGCGGTGGCGGTGGCGGTGGGGGGGAGTTCGCGGGGTATCCTCTGGG
CCCCCGGAAGCCGTCTTCGGTGTATTCCGAGCAAGGGAACTCTAGGAGCG
TCATGGCGGCGGCATCGATGGCGGCGGCGGCGACGGCGGCTGCTGCTGCG
GCGGCATCGACGAAGCGGGAGTGGAAGTACCAGCTGGAAGGGAGAAGCAA
ATGGTGGAAGAAGCCGAAGATGTACCGGCCGGCTTCGACGGCGTTTTACG
ACGCAAACGCGCCTGAAGGCGGTGGCGGCGGTGGCGGCGGTGGCGGCGGC
GGAAGCGTAATCGCCGGGCTGTCTTTGGCCGCCGCCGCCGCCGCTGCCGG
CGTCATGGATCCTAGAGACCCCTCGTCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCGCTGCTGCGGGCGTAACGGCACCCGCGACGGTCCCA
ACGGTCGCGACAGCGGGAGCCGCGGACGCCGCCAGGGTGAGGCGGTTGGC
CAGCGGCAGCGCAGGCGGGGCCGCCGGGGGCGGTGGGGACGGGGGATCAG
TTTCGGCATTCTCCGGCGGGGGAGTCGGCGGCGGCGGCGGCGGCGGCGGC
GGGAGTGCCGACGTGTTCGGCAACGTTCCCGGCCCGGAGAACCCGTTCGC
GGGCGCGGGACCCGAATATCACCACCACCTTCAGCAGCAAGTCCCCGCGG
AAGGGGCGGTGGGCGTCGTCGCCGGCGTTAGCGGTAGTGCTGCTGCGATG
GCATCAGCGGCGGCGTCGCGAGGAGCGGGGGTGGTGGGCTCCAACGCGCA
TTCGCCCTACGGCAGCAGCGGCGGCGTGGTGAGCGGGGGATATGGAAACC
CTTTCGCCGGCGTTGACGGGGGCGGGGCTCAGGGCGCGGTGGGCGGGGGC
TTCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGAACACGCCGTTTCGGGCCGGGGTTGCTGGAACGGCGAGGG
TTGCGGCGGCGACGATAGCTGCCGCTTCCGCCGCCCCTCCAGCGCTTGGC
GGCGGCGGCGGCGTTGTCGATGGAGGAGTGACCGGTGGCGGTGGCGGTGG
CGGTGGGGGGGAGTTCGCGGGGTATCCTCTGGGCCCCCGGAAGCCGTCTT
CGGTGTATTCCGAGCAAGGGAACTCTAGGAGCGTCATGGCGGCGGCATCG
ATGGCGGCGGCGGCGACGGCGGCTGCTGCTGCGGCGGCATCGACGAAGCG
GGAGTGGAAGTACCAGCTGGAAGGGAGAAGCAAATGGTGGAAGAAGCCGA
AGGACGGGCATGTGACTTGCATGAGCTGGTTCCCGCACTCGGAGACTGTC
GCCGGGGACGGCATGGGAACGGGCGGCGCCGACATCCGCATGCTCGCCGT
CGGCTACGCCAGTGGGAAGGTAAGCGCTTTAAAACTACAAGACGGGCATG
TGACTTGCATGAGCTGGTTCCCGCACTCGGAGACTGTCGCCGGGGACGGC
ATGGGAACGGGCGGCGCCGACATCCGCATGCTCGCCGTCGGCTACGCCAG
TGGGAAGGTAAGCGCTTTAAAACTACAATTTCGTCCGGCACAGAGCTGTT
GTTGCACTTGTCGGCGCGGTAGCGAGGCGCGTGTTTCTTCACTGCCCTGG
TCTTGATTTCGTCCGGCACAGAGCTGTTGTTGCACTTGTCGGCGCGGTAG
CGAGGCGCGTGTTTCTTCACTGCCCTGGTCTTGA back to top
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