mRNA_E-fasciculatus_F_contig15718.3947.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15718.3947.1
Unique NamemRNA_E-fasciculatus_F_contig15718.3947.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15718.3947.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.890e-48
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 2 
Query:   29 KRKCDKSVTCTLSRVVLV*LLSPSKARSGSRVLDPFCGSCSLLLPAAHMGAQTWGSDVRGPATASEETRALVSGDTSGDGGVRQADREGLEQMYQDFKALGVVAPTLVAADVGDEESPVGRPE-YD*LVRYP 421
            +R+C +  T     V L+ + + +K R GSRVLDPFCGSCSLLLPAAHMGA+TWGSDV GPATASEE  ALV GDT  +GGVRQADRE  EQ+YQDF+ALGV APTLVAADVGDEESPV RPE YD +V  P
Sbjct:  255 RRRC-RGPTAIEPEVALI-MANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGALVGGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDP 384
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BLAST of mRNA_E-fasciculatus_F_contig15718.3947.1 vs. uniprot
Match: A0A0G4HHF0_9ALVE (UPF0020 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HHF0_9ALVE)

HSP 1 Score: 59.3 bits (142), Expect = 8.890e-7
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2 
Query:  113 GSRVLDPFCGSCSLLLPAAHMGAQTWGSD-----VRGPATASEETRALVSGDTSGDGGVR-QADREGLEQMYQDFKALGVVAPTLVAADVGDEESPVGRPEYD*LVRYP 421
            G+RVLDPFCGSCSLLLP A+ GA+T+G D     + G A+A  + +  +    + + G+R  A   GL ++  +F   G+  P L  A +      V    +D +V  P
Sbjct:  363 GNRVLDPFCGSCSLLLPCAYFGAETFGLDADDSVLLGLASARRDQQKQIR--EAQEKGMRGSASSIGLPEISSNFVEKGLPVPRLFHAPIDKPPPEVAETFFDAIVTDP 469
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15718.3947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G924_ECTSI8.890e-4869.70UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0G4HHF0_9ALVE8.890e-735.78UPF0020 domain-containing protein n=1 Tax=Chromera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15718contigE-fasciculatus_F_contig15718:58..696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.1e-27
Seed eggNOG ortholog2880.D7G924
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
EggNOG free text desc.tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGsCOG1041@1,KOG2671@2759
EC6.2.1.45
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15718.3947.1prot_E-fasciculatus_F_contig15718.3947.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15718 230..463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.9953926-UTR-E-fasciculatus_F_contig15718:57..2291622928042.9953926-UTR-E-fasciculatus_F_contig15718:57..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15718 58..229 +
1695995800.93417-UTR-E-fasciculatus_F_contig15718:57..2291695995800.93417-UTR-E-fasciculatus_F_contig15718:57..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15718 58..229 +
1622928043.0312262-UTR-E-fasciculatus_F_contig15718:463..6961622928043.0312262-UTR-E-fasciculatus_F_contig15718:463..696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15718 464..696 +
1695995800.9545105-UTR-E-fasciculatus_F_contig15718:463..6961695995800.9545105-UTR-E-fasciculatus_F_contig15718:463..696Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15718 464..696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928043.0128045-CDS-E-fasciculatus_F_contig15718:229..4631622928043.0128045-CDS-E-fasciculatus_F_contig15718:229..463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 230..463 +
1695995800.944372-CDS-E-fasciculatus_F_contig15718:229..4631695995800.944372-CDS-E-fasciculatus_F_contig15718:229..463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15718 230..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15718.3947.1

>prot_E-fasciculatus_F_contig15718.3947.1 ID=prot_E-fasciculatus_F_contig15718.3947.1|Name=mRNA_E-fasciculatus_F_contig15718.3947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MGAQTWGSDVRGPATASEETRALVSGDTSGDGGVRQADREGLEQMYQDFK
ALGVVAPTLVAADVGDEESPVGRPEYD*
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mRNA from alignment at E-fasciculatus_F_contig15718:58..696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15718.3947.1 ID=mRNA_E-fasciculatus_F_contig15718.3947.1|Name=mRNA_E-fasciculatus_F_contig15718.3947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=639bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15718:58..696+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAGCGAAGAATGGAGGTAGTCCCCCGAAAACGAAAGTGTGACAAGTCAG
TCACATGCACTCTCTCGCGTGTCGTCCTTGTCTAACTACTTTCGCCAAGC
AAGGCCCGATCGGGTTCTCGAGTGTTGGACCCATTCTGTGGATCGTGCTC
CCTCCTCCTGCCGGCGGCGCACATGGGCGCTCAAACGTGGGGTAGCGACG
TGCGTGGCCCGGCTACCGCTAGCGAGGAAACTAGAGCACTTGTGAGCGGC
GACACGAGTGGAGACGGCGGGGTGCGCCAAGCCGACCGGGAAGGTTTAGA
ACAGATGTATCAGGACTTCAAAGCGCTCGGCGTTGTCGCACCTACGCTTG
TGGCGGCGGACGTTGGCGACGAAGAGTCTCCTGTTGGGAGACCCGAGTAC
GATTGATTGGTTCGATATCCGCGTCGTTTGTGAAAGTTGTGTTTCTGTTG
TACGCTCGCGTATGGAAAGGGGTGTTTGTCCCCGTGATTTTCACCGTGGA
AGTTGCTGATCTTTCGTTTAATCGAACGAACAGAGGCATGTTGCATATAT
ATTAGTTGTTGTGCATTGGCGAGTTTTCGACACGTGTTTGTGTTGGTTTG
CGTTTTGACTTACCGGCGTGGAGCCTTCAACCGGAATCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15718:58..696+

>mRNA_E-fasciculatus_F_contig15718.3947.1 ID=mRNA_E-fasciculatus_F_contig15718.3947.1|Name=mRNA_E-fasciculatus_F_contig15718.3947.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15718:58..696+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGCTCAAACGTGGGGTAGCGACGTGCGTGGCCCGGCTACCGCTAG
CGAGGAAACTAGAGCACTTGTGAGCGGCGACACGAGTGGAGACGGCGGGG
TGCGCCAAGCCGACCGGGAAGGTTTAGAACAGATGTATCAGGACTTCAAA
GCGCTCGGCGTTGTCGCACCTACGCTTGTGGCGGCGGACGTTGGCGACGA
AGAGTCTCCTGTTGGGAGACCCGAGTACGATTGAATGGGCGCTCAAACGT
GGGGTAGCGACGTGCGTGGCCCGGCTACCGCTAGCGAGGAAACTAGAGCA
CTTGTGAGCGGCGACACGAGTGGAGACGGCGGGGTGCGCCAAGCCGACCG
GGAAGGTTTAGAACAGATGTATCAGGACTTCAAAGCGCTCGGCGTTGTCG
CACCTACGCTTGTGGCGGCGGACGTTGGCGACGAAGAGTCTCCTGTTGGG
AGACCCGAGTACGATTGA
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