mRNA_E-fasciculatus_F_contig1571.3943.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1571.3943.1
Unique NamemRNA_E-fasciculatus_F_contig1571.3943.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1571.3943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1571contigE-fasciculatus_F_contig1571:353..1318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size966
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1571.3943.1prot_E-fasciculatus_F_contig1571.3943.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1571 390..902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.2437127-UTR-E-fasciculatus_F_contig1571:352..3891622928042.2437127-UTR-E-fasciculatus_F_contig1571:352..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1571 353..389 +
1695995800.6673574-UTR-E-fasciculatus_F_contig1571:352..3891695995800.6673574-UTR-E-fasciculatus_F_contig1571:352..389Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1571 353..389 +
1622928042.2683225-UTR-E-fasciculatus_F_contig1571:902..13181622928042.2683225-UTR-E-fasciculatus_F_contig1571:902..1318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1571 903..1318 +
1695995800.6892033-UTR-E-fasciculatus_F_contig1571:902..13181695995800.6892033-UTR-E-fasciculatus_F_contig1571:902..1318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1571 903..1318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928042.25638-CDS-E-fasciculatus_F_contig1571:389..9021622928042.25638-CDS-E-fasciculatus_F_contig1571:389..902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1571 390..902 +
1695995800.6775234-CDS-E-fasciculatus_F_contig1571:389..9021695995800.6775234-CDS-E-fasciculatus_F_contig1571:389..902Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1571 390..902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1571.3943.1

>prot_E-fasciculatus_F_contig1571.3943.1 ID=prot_E-fasciculatus_F_contig1571.3943.1|Name=mRNA_E-fasciculatus_F_contig1571.3943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
MALAGRGATSVGPTSPESGSGWRDFPAAEVAAGPQRGEGPRRPLPNRWTK
ASPPTRSGCAGSLNASAKPKVLDSQLLKRTSSRLTWCSTVTGAQGTPRVF
PLVFVDPPRRYHGPPRQRLSMANVRVVATGSSVTEAAPKEPHVGETNTGA
LLTPCGREEDDALAHRHYRD*
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mRNA from alignment at E-fasciculatus_F_contig1571:353..1318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1571.3943.1 ID=mRNA_E-fasciculatus_F_contig1571.3943.1|Name=mRNA_E-fasciculatus_F_contig1571.3943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1571:353..1318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACTCGCGGCTCGGCGATTCACGCTCCGAAAAAGGGATGGCCCTCGCGG
GAAGAGGTGCTACATCTGTGGGTCCGACAAGCCCGGAGAGTGGAAGCGGA
TGGCGAGACTTCCCCGCAGCAGAGGTCGCGGCCGGCCCCCAAAGGGGAGA
AGGACCTCGTCGTCCGCTGCCAAATCGATGGACAAAGGCGTCACCCCCGA
CACGTTCTGGGTGTGCGGGCTCTCTAAATGCCTCTGCCAAGCCAAAGGTG
CTGGATTCGCAGTTGCTGAAGCGCACGTCGTCCCGGCTTACGTGGTGTTC
GACCGTTACGGGGGCGCAGGGGACCCCGCGGGTGTTCCCCCTCGTCTTCG
TTGACCCGCCCAGGCGCTACCACGGCCCTCCTCGACAACGGTTATCAATG
GCAAACGTGAGAGTGGTTGCCACCGGCAGTTCTGTCACGGAGGCCGCCCC
GAAGGAGCCTCACGTGGGGGAGACAAACACAGGGGCTCTGCTCACACCGT
GCGGTAGGGAAGAGGATGATGCCCTTGCCCATCGGCACTATCGAGATTGA
CTACGATCACCGCCTCATGTGAGAGAATCAGTAGGCGGAAAACCCAAACC
CTACGGTCTCCCACCCCATTTTCATCAAGGCTACAACACAGCTTTCCAAG
TATTAGATTCGCGTTTAATATGCTCAACGTGTTTGCTTCCGGCCAGCATC
ACCAGCAACTAGAGGCAGGGAAACGGGAGAGGACGAACACGGCCGTTGCA
AGGTGATAGGGCTACCATTACAGAGCCGACTGTAAGTGGGGGTGGTATCG
AGGGCAAGGGTACGGTCGAAACGCCTTACCTCGGGTGGAGAGTGGGGCGG
ACAGGGTTGACGGTATTTTTTCTGCGTAGACCCTCCGGCATCGAACTCCA
GGACAAGGTTTGCAGAGGAAGCGTTCCCTAAGAAAAGAGAACCGTTCCAT
GACAAGGGAAAACGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1571:353..1318+

>mRNA_E-fasciculatus_F_contig1571.3943.1 ID=mRNA_E-fasciculatus_F_contig1571.3943.1|Name=mRNA_E-fasciculatus_F_contig1571.3943.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1571:353..1318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCTCGCGGGAAGAGGTGCTACATCTGTGGGTCCGACAAGCCCGGA
GAGTGGAAGCGGATGGCGAGACTTCCCCGCAGCAGAGGTCGCGGCCGGCC
CCCAAAGGGGAGAAGGACCTCGTCGTCCGCTGCCAAATCGATGGACAAAG
GCGTCACCCCCGACACGTTCTGGGTGTGCGGGCTCTCTAAATGCCTCTGC
CAAGCCAAAGGTGCTGGATTCGCAGTTGCTGAAGCGCACGTCGTCCCGGC
TTACGTGGTGTTCGACCGTTACGGGGGCGCAGGGGACCCCGCGGGTGTTC
CCCCTCGTCTTCGTTGACCCGCCCAGGCGCTACCACGGCCCTCCTCGACA
ACGGTTATCAATGGCAAACGTGAGAGTGGTTGCCACCGGCAGTTCTGTCA
CGGAGGCCGCCCCGAAGGAGCCTCACGTGGGGGAGACAAACACAGGGGCT
CTGCTCACACCGTGCGGTAGGGAAGAGGATGATGCCCTTGCCCATCGGCA
CTATCGAGATTGAATGGCCCTCGCGGGAAGAGGTGCTACATCTGTGGGTC
CGACAAGCCCGGAGAGTGGAAGCGGATGGCGAGACTTCCCCGCAGCAGAG
GTCGCGGCCGGCCCCCAAAGGGGAGAAGGACCTCGTCGTCCGCTGCCAAA
TCGATGGACAAAGGCGTCACCCCCGACACGTTCTGGGTGTGCGGGCTCTC
TAAATGCCTCTGCCAAGCCAAAGGTGCTGGATTCGCAGTTGCTGAAGCGC
ACGTCGTCCCGGCTTACGTGGTGTTCGACCGTTACGGGGGCGCAGGGGAC
CCCGCGGGTGTTCCCCCTCGTCTTCGTTGACCCGCCCAGGCGCTACCACG
GCCCTCCTCGACAACGGTTATCAATGGCAAACGTGAGAGTGGTTGCCACC
GGCAGTTCTGTCACGGAGGCCGCCCCGAAGGAGCCTCACGTGGGGGAGAC
AAACACAGGGGCTCTGCTCACACCGTGCGGTAGGGAAGAGGATGATGCCC
TTGCCCATCGGCACTATCGAGATTGA
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