mRNA_E-fasciculatus_F_contig157.3938.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig157.3938.1
Unique NamemRNA_E-fasciculatus_F_contig157.3938.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 3.410e-132
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 2
Query:  419 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 1027
            MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV
Sbjct:    1 MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECCEGV 203          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN)

HSP 1 Score: 233 bits (594), Expect = 9.830e-67
Identity = 110/196 (56.12%), Postives = 149/196 (76.02%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDA-QVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 1015
            LFKYIIIG+T VGKS+I+L FTE+ F+ AHDMTIGVEF ++ V + D  Q  LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ LPRWL+EA+ N++NP+L +ML+ NKADL   R ++  EG+AFAD HG+LF+E++A+N   VE  F+ +A+R+ +   A+PR K + ++L+PE  +    F   C
Sbjct:   12 LFKYIIIGDTEVGKSSIMLMFTEQHFQQAHDMTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKSAAVKLQPESRAKKDDFDCGC 207          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 9.320e-63
Identity = 110/196 (56.12%), Postives = 140/196 (71.43%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSI-GDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAEC 1015
            LFKYIIIG+T VGKS+++L FTER F +AHDMTIGVEF ++ V + G     LEIWDTAGQES+LSITRSYYRGTD CLLV+D+T R+SF+ L RWL EAR N+ANPDL +ML+ NKADL  KR ++  EG+AFAD HG+LF+E+SA+N   VE  F+ +A+R+ +    +PR +   I L       T      C
Sbjct:   11 LFKYIIIGDTEVGKSSLMLMFTERHFGEAHDMTIGVEFDSRAVKLAGGEAANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESKRQISRAEGKAFADLHGMLFVELSAKNEKLVESVFVESAQRVLNVRRDNPRQRGPNIALAQPSRRTTDYDYCGC 206          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7R9A5U8_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A5U8_9CRUS)

HSP 1 Score: 220 bits (560), Expect = 5.490e-62
Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPE 979
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++I D Q+KL+IWDTAGQE+F SITRSYYRG  G LLV+DIT R +F  L +WLD+AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA+ I+  L+     P N+ +GI+L P+
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIEDKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRDTFNHLTQWLDDARQHS-NSNMVIMLIGNKSDLESRRDVKKEEGEAFAREHGLIFMETSAKTAANVEEAFISTAKEIYMKLQEGVFDPNNEANGIKLGPQ 190          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: S4REH2_PETMA (RAB2B, member RAS oncogene family n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4REH2_PETMA)

HSP 1 Score: 219 bits (557), Expect = 1.720e-61
Identity = 109/191 (57.07%), Postives = 144/191 (75.39%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMSAT 994
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ ++IG  QVKL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L  WL++AR +S N ++ +MLI NK+DL  +R V  EEG+AFA +HGL+FME SA+ AA VE AFI TA  I+  ++       N+ +GI++ P+++ AT
Sbjct:   11 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIAIGGKQVKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTAWLEDARQHS-NSNMVIMLIGNKSDLESRREVKCEEGEAFAREHGLVFMETSAKTAANVEEAFINTAREIYEKIQEGVFDVNNEANGIKIGPQQLGAT 200          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.260e-61
Identity = 112/204 (54.90%), Postives = 148/204 (72.55%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKPEEMS-----ATSRFKAECC 1018
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ +SI + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EAR NS N ++ +MLI NK+DL  +R VTT+EG+ FA+++GL+F+E SA+ A  VE AFI TA +I+ ++ +    P N+  GI+L P         A    K+ CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.330e-61
Identity = 113/205 (55.12%), Postives = 152/205 (74.15%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLK------PEEMSATSRFKAECC 1018
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I + Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EA+ NS NP++ +MLI NK+DL  +R V+T+EG+ FA+++GL+F+E SA+ AA VE+AFI TAE+I+  + +      N+  GI++       P+  S  S  KA CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNS-NPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKA-CC 208          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A5B8MXK9_9CHLO (Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A5B8MXK9_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 2.660e-61
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 934
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A7S3C719_9CHLO (Hypothetical protein n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3C719_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 2.660e-61
Identity = 105/168 (62.50%), Postives = 135/168 (80.36%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 934
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ V+I   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R++F +L  WLD+AR + AN ++++MLI NK+DL  +R VTTEEG+AFA +HGL+FME SA+ A  VE AFI TA +I+  +E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNSLASWLDDARQH-ANANMTIMLIGNKSDLTHRRAVTTEEGEAFAKEHGLVFMETSAKTAHNVEEAFINTARKIYDKIE 172          
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.520e-61
Identity = 106/185 (57.30%), Postives = 144/185 (77.84%), Query Frame = 2
Query:  431 LFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLEA---HPRNKPSGIQLKP 976
            LFKYIIIG+T VGKS +LLQFT+++F+  HD+TIGVEFGA+ +++   Q+KL+IWDTAGQESF SITRSYYRG  G LLV+DIT R +F  L RWL+EAR NS N ++ +MLI NK+DL  +R V+T+EG+ FA ++GL+F+E SA+ AA VE AFI TAE+I+ ++++    P N+  G++L P
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKSDLEHRRAVSTKEGEQFAAENGLIFLETSAKTAANVEAAFIQTAEKIYGNIQSGVYDPTNEAHGVKLGP 189          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig157.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT3_ECTSI3.410e-132100.00Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
F0Y2Q0_AURAN9.830e-6756.12Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S4D0_9STRA9.320e-6356.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9A5U8_9CRUS5.490e-6258.60Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
S4REH2_PETMA1.720e-6157.07RAB2B, member RAS oncogene family n=2 Tax=Petromyz... [more]
D7FSF1_ECTSI2.260e-6154.90Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2CHD5_9STRA2.330e-6155.12Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A5B8MXK9_9CHLO2.660e-6162.50Small rab-like GTPase n=2 Tax=Chlorophyta TaxID=30... [more]
A0A7S3C719_9CHLO2.660e-6162.50Hypothetical protein n=2 Tax=Chloropicon roscoffen... [more]
A0A835Z1V8_9STRA3.520e-6157.30Rab2A, rab family GTPase n=1 Tax=Tribonema minus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig157contigE-fasciculatus_F_contig157:19221..27115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.1
Seed ortholog evalue4.7e-111
Seed eggNOG ortholog2880.D8LIT3
Preferred nameRab2
KEGG koko:K07877
KEGG Pathwayko04152,map04152
GOsGO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0017157,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045921,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1903530,GO:1903532
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG0098@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab2B, RAB family GTPase
Ec32 orthologEc-20_001420.1
Exons6
Model size3306
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig157.3938.1prot_E-fasciculatus_F_contig157.3938.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig157 21497..26697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928041.567383-UTR-E-fasciculatus_F_contig157:19220..214961622928041.567383-UTR-E-fasciculatus_F_contig157:19220..21496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 19221..21496 -
1695995800.303222-UTR-E-fasciculatus_F_contig157:19220..214961695995800.303222-UTR-E-fasciculatus_F_contig157:19220..21496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 19221..21496 -
1622928041.7018704-UTR-E-fasciculatus_F_contig157:26697..271151622928041.7018704-UTR-E-fasciculatus_F_contig157:26697..27115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 26698..27115 -
1695995800.4044595-UTR-E-fasciculatus_F_contig157:26697..271151695995800.4044595-UTR-E-fasciculatus_F_contig157:26697..27115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig157 26698..27115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928041.5819762-CDS-E-fasciculatus_F_contig157:21496..216101622928041.5819762-CDS-E-fasciculatus_F_contig157:21496..21610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 21497..21610 -
1695995800.3254597-CDS-E-fasciculatus_F_contig157:21496..216101695995800.3254597-CDS-E-fasciculatus_F_contig157:21496..21610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 21497..21610 -
1622928041.629634-CDS-E-fasciculatus_F_contig157:22100..222211622928041.629634-CDS-E-fasciculatus_F_contig157:22100..22221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 22101..22221 -
1695995800.3423617-CDS-E-fasciculatus_F_contig157:22100..222211695995800.3423617-CDS-E-fasciculatus_F_contig157:22100..22221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 22101..22221 -
1622928041.641818-CDS-E-fasciculatus_F_contig157:22985..231471622928041.641818-CDS-E-fasciculatus_F_contig157:22985..23147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 22986..23147 -
1695995800.363944-CDS-E-fasciculatus_F_contig157:22985..231471695995800.363944-CDS-E-fasciculatus_F_contig157:22985..23147Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 22986..23147 -
1622928041.656158-CDS-E-fasciculatus_F_contig157:23563..236191622928041.656158-CDS-E-fasciculatus_F_contig157:23563..23619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 23564..23619 -
1695995800.37288-CDS-E-fasciculatus_F_contig157:23563..236191695995800.37288-CDS-E-fasciculatus_F_contig157:23563..23619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 23564..23619 -
1622928041.6725442-CDS-E-fasciculatus_F_contig157:24604..247201622928041.6725442-CDS-E-fasciculatus_F_contig157:24604..24720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 24605..24720 -
1695995800.3832645-CDS-E-fasciculatus_F_contig157:24604..247201695995800.3832645-CDS-E-fasciculatus_F_contig157:24604..24720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 24605..24720 -
1622928041.6855185-CDS-E-fasciculatus_F_contig157:26654..266971622928041.6855185-CDS-E-fasciculatus_F_contig157:26654..26697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 26655..26697 -
1695995800.393591-CDS-E-fasciculatus_F_contig157:26654..266971695995800.393591-CDS-E-fasciculatus_F_contig157:26654..26697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig157 26655..26697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig157.3938.1

>prot_E-fasciculatus_F_contig157.3938.1 ID=prot_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
MPTLLFKYIIIGNTAVGKSAILLQFTERQFRDAHDMTIGVEFGAKDVSIG
DAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWL
DEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSA
RNAAQVERAFIGTAERIFSDLEAHPRNKPSGIQLKPEEMSATSRFKAECC
EGV*
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mRNA from alignment at E-fasciculatus_F_contig157:19221..27115-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig157.3938.1 ID=mRNA_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7895bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:19221..27115- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATACCTACCTCCTCTCCGTCTTCCCCTTCCCGCAGGACGAAGCGTTGAAT CTACAGCAGCACGTCTGTGGCTCATCTTCCCTCTCATCCTGATCACGCAG GGAGGAAGCCGACCGAAGGAGCTTGTGCTGCCAAGGCACCGCTCTCGTTC ACAGATCGCACACAAAAAACGCTCAACACACCCACCGCACACAGCTTGAC CTCCGGCGTCGCTGACAGCTGCTGCTATCCACCGCGGCCCGCCGCTGGAG GCACACTGCTGATTGTGTAGCTCCAGCCAGGTCGCATTGACTCGCGTGCT GCGGAAGTCGTGGACGGTGCTTGGGCGAGCCGCGGTTCAGTCGATTGCAG GAAAGGCTGTGTGCGTGTCGGAAGGACCATCCCTGATCCGGGCCTGAGGG CGGCACTGCTGCTGAGCCATGCCTACCCTGCTGTTCAAGTACATCATTAT CGGTAACACCGGTGAGCCACAACTTTGAGGCCTCATTTTTTCTTTGTTTC TTCCTCGCCGCTCACCGCCGCCTCTCCCTGCTCCCTTGAGACAGTCGTCA GAGGTTGAAAGGGCTCTCTCTGTGGGTCTCCGCACCTGAATTCTTGAAGA AAGAGATCACTTTTTAACTCCTCTGATGATGCAGTCGCAAACATCGGCCG GCACGCAGTTGTACCTTTTTTTCCTGAAAAGATCGATGCAATTTTGTGTA TCTAGATAGCAACCAGCAGCTGGGGATGGCGGTTGCAGTCTGAGAGCATT GCATGATCGTGATGCAGCCCGTTCTCGGTGAATAGGCGCAAACGCGGGCG GCACGTTGAAACTTGAGCGGGCACACAAGAAGGTGTTCCGAATACCTAGA CTGCAAAGCGCCCAACACTGCTGTTTGGACCCGCACACACCACATCAACG AGGTAAGGTTTCCTGGTGCCACTGGCGAGTCATGGCTGTCAAATGAATCG GACATTTATTTCCGGCGTGATGCATGCATGGGTTCAGACAAATCACAAAA GTTGTCCCGGTTAAGTTTGGGGGGCCTACGTACTTCGCTACACAGCAGTA CATGGAATGGATGCACCTCTATACCTCTATGTTGCACGTAGGATGCTTAT GTAGGTGCCACCCAACCGTACCGTTTTCTGCGCACAGCGAATCCGTACAC ACCTTCAGGCATGGTTTTTTGGGCGCGCCGGACGGGCTCACAATGCAAAG GCAACACTGCAGCAGGGGGGTTTACCTTTTTTTTTTTTGCTCTCCGCCTT CGGTTCTGCGGTGCAGAGAATACGAGTTCAAAAGTTCGTGGCACATGAAG AATCACAGAAGCATTCGATACCCATGCAGTGCATGATGAGAAGAACCAGA TCTGCATCTCCCAGCGTGTTGTAGAGGTAAATCTACCGTTTGGGGGGGGA GGTTACGTCATGTTGCACATAGCATACGAGCCTACAGATGATCTCCCCTC TGGTTCGATACCGTATAACACACAAAAGATAACAAATAACGACAACCCAC CCAACCGGAATTTGCGTTTGTGTTGGCCGGAAGTTGTGTGTGTTTTGAGT CAAGCGGAAATGAGGTGAGGCACCCAGTCGCGGTACAGCAGTACATAGTA CGAGAGTGGGTGATGAGATGAGATCCAGGACACAGACAGGGTGCTAAACT TCGACATGACCTTGCGGAACTTTGGACTGGACGACGGGTGACGTTGTGCT CTAGTTGTTGCATGTACTGTAGCTGTTCGCAGCGCCACGTGTCGGGGAGT ATCCAATGCTAACGCATCTTTTGCGGTCCTTGCCCATGGGGGGAAGATAT CGCGCCTCGGCTACTCGGAGCGAGTAGTGTACGCGACAGCAGTAGTAGCG TGCTTTCCAGCAAAAGTGGCGACGAAATGGTTGTAGAAACCAGAACATTT GAAGGGCGGTTGAAGGTATTGAGCAGGTGAAAAGAGAGAGAGGAACACAA TCAAGAAGCACCGCTGAGGAACCTGGTGCAGCAAGACAAGACATCCCATA AGAAGTACCTCATATGTTGGGCGTGCTACATCTTTTCCTCTCCAGTTTTT TTTTTTTGCGGAATGACAAGAATAAAACTTCCTCCCGGCGAACGGCACGT GCGATGCCCCGACGAGCGTGAGTGATGTGCGTTGCCTGTCAGTCTGTCGG TTTGTTTGTCTACATGACCCTCCTCCCCCCCCACCGCAGCCATTCCTGAC CACAACAACGTTCTGAAATATTTTGTTGTTTCCGAGGCTGCTGAAGACCG TGTCGTCTCGGTGGTGATGTTCATGTGTTTACCCCCCGTCTCTTTTGAGT CTATTGTTACAACTTGATAGCCTTCTTGATGGCAGGCGACAATATCTTGA AACGGTTTTACCGCTGTTGCTCTCGCTCGTGCTCGCGTCTTGCAGCGGTG GGGAAGAGCGCGATCCTGTTGCAGTTCACAGAGCGACAGTTCCGCGATGC GCACGACATGACAATCGGGGTGGAGTTTGGGGCCAAGGACGTGTCGATAG GGGATGCCCAGGTGAGGGCGAGGGTAGAACTTCGGATGGGTACGCGTGAT TCCCGCTGGTTTCAAAATCTCTCAGTAGCTCTGGCTTTTCGAGCGAGGTG TTCGTGTGCGTGACGTATCCACGTCGAAGAAAGAGGGGATTTTTCTCGTT GAAGGAGAGGGGATTTTTCACGGCTCCAGTACGGCCGTCTTCATACTACA CAAAGAAATGATATCGGGAAGTCTGTGTTGTCCAGTTTTTACTGCTGGAG ATCCTCCTGGTCAGGAAACTTTTATTACACCTTTTCGCGAGTAGGCAAAC CTCGACTTCCATGTTCGCGAGGGAACAGCGTTTCTGAACCATAATCCCAC GAAGGTTGAAGGCAGGGTGCCGCAGGAGGAGAGAAAACAGCAATGCCCAG AAGAGGGGGCTACGCCACCGGATTGGTGCGAATGGGTAGGGGGGAGTTAA GCTAGAGCGCGGATGCACATGTTATCAGTGCGATGATCTGAAGTATGTAG CACGTATCGTGTGTCGTTAGATAGAGTAGCACGCATGAAAGCCTGTCCGT GATGCTCCCTACGGTATGGGCGGGGAGTGTAGGGGGGTCACAAGAGGGGG GGCGGGGGCGGGGGGGTCTGCATGTCAGGGGATGGATTCCATGTCCATTT GTTCGACAGCTTGTTTTAGTGTCCCTCCCCCTGCACCTGCTGCTGATACC GCGGCCACCGCTGGTTCCTTGACGTTCGTTTGTTGAGACCGGTTGTCCAC CGCAGTCCGGCGATGGTAACAAGGTTCCTGGTGGGTTTTCGATGATGCGC ATCGTCAGGCTGTGGTAATGGCGTTGTGCGGAGGACGAATGATCGGACCC CCCGAAAGTGTGACGACCTGGTTTGCTCGATTTCGTTTCTCAGGCGTCGT CCGCGAAATGGCTGTAAGTACTTTTCTTTTCAGTCGTGGTGACACCAACC TGTTGTTTTGGCTGTGTCCCCGACCGTGTCGCTGCTGTTCCGGCAGGTTA AGCTGGAGATTTGGGATACGGCGGGACAAGAGTCATTCCTCAGCATCACG AGGTGCGGCGGACATGTAAAACAGCGTGGATCGGGCTGTTCTTTGGAGGG ATGGGGATGGACGGGGGATCGAGGAATAGACGACAAATGTGAATGGCAGT ATGAACGTTGCGTTGCAGCTGTCAATAGTGTTGCTCTTCCACCCTCATCT GGTCCGGTGTTGACCGCTCCCGACAGGGTGGCAGGCAGAATTGATGCGTT GACCCAAACGACCTGCTGTTGATCACTCGTACCACATACATTTGGAACAT GGTGTTCGGACGTTCGGACGTTGTTAAAAGCACTGCTAGGTGCCGACAAT ACAGTCGGCCACAGCTGGTGATGATGGTGCTGCTGCTGCTGATAATCANN NNNNNNNNTGATAATCAAGGCACTTTTACCTACCCCGTAATGTCCCACCA TCCACCACGGTTCGGTAGATCGTACTACCGTGGGACCGACGGCTGCCTGT TGGTCTTCGACATCACCGACCGAAAATCCTTCGAGGCGCTGCCGCGGTGG CTTGATGAGGCGAGGATGAACTCGGCCAATCCGGACCTTTCCGTCATGCT CATCGCCAACAAAGCAGACCTCGCCGAAAAGTGAGTCAGGGTTGCGCTGT TGTAGCCTGTAGCCACAAGTCTGGGGAGGGTGTTTAGAATTGTCGTGAGT TGGTCAGGGAGTGTTGGTGCGAGTTGTGTGAGTTGTGTGAGGGAGTCCAC CGACCCGACCCATCGTGTCTCCGTCGAGTACAAATATGTACAAGATTGTG TTGTTGTTGTGCTTATGTCAAGGAAAGGATGAAAGCACAGTGATCACAGT GCGTTCGGCATGCGACGCCGTCATGTTTCATGTCCAGGTTATTTTCAGCT GCTGATTTTCGGGCAACCGTAGTGCGTTCGGAGAGCTCCAGCCACGCAGC GCAACATACATTGTTGGAGGAAGATATGGTTTTTGCTTTTGTTGTTGGCT TCCAGGCGGTGTTTGCCGATGATATGCTAGAACGTTTCTCACTTTGTTGC GAAAATGCGGCGCAGAGAAATGCTTTCTCACCCAAAAAAATTGTATCGGT ACCTTCCAAAACATGCCCACCATCGCCCACGATGCGCGTTGTTTTTGGTA GCATGAAGGAGGATATTCAATTCAAATGCAGTACGCCACGTCTACCACCC AGATGTTTCGTTCGAAGGGCATGTGGATCGCTCTGTGTATGAGCGACAGA TCCCAGTGCAGCCTCACCTCTGCTGGTAGCAAGCGAATTGGCTGTGTTTT TGTTGGACAGGCCCCTCCTGTTGACTGCGCATACATTACGCCCTGAGCGC ATCTTGTATCGCACTGCTGTGCGATCGTTTTGCTGCGTTATCAGGCGGTG TGTGACGACGGAAGAGGGGCAGGCGTTCGCAGACAAACACGGCTTGCTGT TCATGGAGATGTCGGCCAGAAACGCAGCGCAGGTGGAACGAGCTTTCATC GGGACCGCGGAAAGGGTAAGTAAGGCCAAGTATTAGTATTCTGCCACTCT TTCCTTGGGCGGTTGGTTGCCTGAGGAAAGGGGTACATATCTGTCGTAAA ATATCAAGAAGATATGCCGTCTTGCATTGACGGGTTCGTCGCAAACACCG ATGGCTGTGTTTGCCGACCCCTTCCTGCGAGTGGTATGGATATCGCACAT CGCACGTGACACTACCCCGGTCGTGGTCAATCCCTGCTCTATGCTCTACC TGGACAGTACGAGCGCATCGTTGCGGTTTGCAATACAAGTCATGACCTAC ATTGTATTTCCAGTAACCCCGGCATCTTTCTCGTCTATTTGTCAATTCAA TATACCTGCATGTGTTCCGCACCCGTTCAATCAATAAAGCCCGAGCTTCC GGTCTATATCCTCTACTTGTGCCATCCCCCAAGACCATTGCTGATTTCCC CACTGTTCGCCTCTCCCTCCGCACATGGCTTCTTCTCCTTTGCCCCGCGA TGCAGATATTCTCGGACCTAGAGGCGCATCCACGCAACAAGCCATCGGGG ATCCAGCTGAAGCCGGAAGAAATGTCGGCTACGTCCAGATTCAAGGCAGA ATGCTGTGAAGGGGTCTGAGCACTGCTGAGAGGTGTCTCCAATAATATTA CCAAGCATCTGCCCGTCGGGTGATGTGCGAACCAAGAGTCGGTTTTTAAC GCCGGCTGAAATTTTGCGGAGGGCTTCAATTGATGGCCGTGTTACCGTCT CGGTGTCCATCTCGCGGTGGCAGGCGGTGCTTTGGGTGGAACGCCTGTTG TATGTTCAATAGTAAATGCTTGGCAACCCCTGCAAAGGTGTTTGGGGCCG TCGCTGGACGCTACCCCTTCACTACTGCTGAATAATAGTAGTTTTGGCTT CAGCTCTCTCTTACTGCCTGCCTCCATACCTGAGTATAGAGGGGGAAAGT TGACGTGGTGGTGTTGGCTGTCGGAGCTTGATTTTATTTTTGTCATGGCT AGTCTGGAGCAATGGCGCAACGCGGCTGTAATGCACGGTTTGATTTCCCT GCCCACGGTGTTGTGGCATTTCTCGCGCTTTGCCCATCTTCCGTGTTGGC TGGCGGGAACAAAGCGGCTCGTTCTGTGCGGGGGGAAACGTGCCCCGACT TGGTCGGGGTGGGGGAGTTGGGCATCTCGCGGGGTGCAAACCGTAAGAGA CAACACGTTATCGATGTCTTGCGGCGAAATCCGCCAGTTAGCGTGCGATG AACGCTATTTGAATCTCACCTGTATTGCTTGCGTGAGGAAGATTTATATA TGCTACTCGTCTCACCTTTGTAAGTGCTTTTGTAATTGGGGTTGAGTTTG AACCGCCCCAGCCATTAAAGCTCTCGTTTTGGGACTGGAGGCGTGTTGGT TCGACCGCATCAATGGTGTGACGGGTTGTCCTAGCGTTCTTCCTCCGGTG CCATTATTTTCATTTCGAATATTCATATGTTTCCCTCCTCCCGTACTACG GGAGCAGCACTACAGTAGTCGCGGTGCCTTCGATGATTTTTTCTTTCGTC CATCCTGCGTCTTGGCGCAGGTTTGATGCCCAGCATCGTGGGCTGGTTGT GAAGCTCGTGCTTTCGTGTATTATAGGACTACTGCAACATTTTTCTTGGT AACGTGTAATACGCAGCTCTGCCGCTGTTGTTTGAAATCATAGCGTTTTT TTTTCCCTTGTTGGGTTACACTTGTTGCTTGCCTTGTAGACGTGATGTAT GTCATTTTCTCTTCTTACCACTGCATGTTGTCGTTGACGACCCTCGTCAG TTAAGGTGTATTTGTTGTAGTGGAGTTTTGCTCTCTGTTTTTAGTCCACC ACTGCCGCAAAGCGGCAGCGCAAGGCTGGGCGTTTCATACTTTTCTTGAT CTCCAACCATGGTTTAGTGGAGGAATTTGTCCGGGTTCTGGGCACGCTCC CAAGCGAGGTGGTGTGCGAGTCGATTTATTTATTTTTTTCTCGGCCCAAA TTGTTAAACGAAACTAGTCCCGATTGTGCATTCCGATTTGAAGCAACAGG GCGCGCCTTGTTTTTGTCAAGAGATTTTTTTTTTTTCGAGAACCGTGCGG GTGAACCCGAGGTTTCGACAACGATTCTCGAGAACGAACTGCTTTCCAGG CGAAGCCCGCCCATGTTTGAATGTGAGATCAGTGCATGTTGAGTTTTACT CGAGGCGCCTCGGTCGTGGTGTTGATGCGTCTGAAGGAGTGCTTTGTCAG AGTATGGAATTGGGTTATGCCGTGAAAACAAGGGCGCCAGAGATTACCTC CCGCGCGGCCCCCGATTCCCAAGGACCCAACTGCTGTATGTCGAGTTTGG TGAACACTCCAACATCTGTAGACTACTCTTCTCAGAAGGGTGCCCACAGC AGTACCGGGTGGAGTGGGTTCCCTTCGGACACATTGTCTGGATATACGCC AGGTGGTGTGTATATTTGCGCACATACGTGCATAAAACCGAGACAAATGC GAACTTGTGACACTACTAGAGTAGACCATAGGTGGTGACCTTTACAGCGT TGCCAACACGCTCCATGCTTGATGCAGAGAAGTTGTCGTGTCTATCGCGG ATCCAGCTGGCGAATGTGCGTGCCTTGGGACACTGCTTTCCTTCGGATCG ACGTAAGTGCGTATGCATGCTGCGGGCAGGAGTTGACTGTGTGCGAAGTG TGACACCGGGAGTTTGATCTTTGTTGCGGACTCTCGACTCGTTACGGTCA AAAGTGAGATGAGATGGTGAACGGGTGGACGTTGTCCTCTACTTGTTGGT AGGGTGGACAGAGGCCGAAACTCGTCGTGTTTTTCAACCGTGCGAAAGAC AAAAGAACCAACTTCTTAGCCTCAATTTCTAAGGAATAATACGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig157:19221..27115-

>mRNA_E-fasciculatus_F_contig157.3938.1 ID=mRNA_E-fasciculatus_F_contig157.3938.1|Name=mRNA_E-fasciculatus_F_contig157.3938.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig157:19221..27115- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTACCCTGCTGTTCAAGTACATCATTATCGGTAACACCGATGCCTA
CCCTGCTGTTCAAGTACATCATTATCGGTAACACCGCGGTGGGGAAGAGC
GCGATCCTGTTGCAGTTCACAGAGCGACAGTTCCGCGATGCGCACGACAT
GACAATCGGGGTGGAGTTTGGGGCCAAGGACGTGTCGATAGGGGATGCCC
AGCGGTGGGGAAGAGCGCGATCCTGTTGCAGTTCACAGAGCGACAGTTCC
GCGATGCGCACGACATGACAATCGGGGTGGAGTTTGGGGCCAAGGACGTG
TCGATAGGGGATGCCCAGGTTAAGCTGGAGATTTGGGATACGGCGGGACA
AGAGTCATTCCTCAGCATCACGAGGTTAAGCTGGAGATTTGGGATACGGC
GGGACAAGAGTCATTCCTCAGCATCACGAGATCGTACTACCGTGGGACCG
ACGGCTGCCTGTTGGTCTTCGACATCACCGACCGAAAATCCTTCGAGGCG
CTGCCGCGGTGGCTTGATGAGGCGAGGATGAACTCGGCCAATCCGGACCT
TTCCGTCATGCTCATCGCCAACAAAGCAGACCTCGCCGAAAAATCGTACT
ACCGTGGGACCGACGGCTGCCTGTTGGTCTTCGACATCACCGACCGAAAA
TCCTTCGAGGCGCTGCCGCGGTGGCTTGATGAGGCGAGGATGAACTCGGC
CAATCCGGACCTTTCCGTCATGCTCATCGCCAACAAAGCAGACCTCGCCG
AAAAGCGGTGTGTGACGACGGAAGAGGGGCAGGCGTTCGCAGACAAACAC
GGCTTGCTGTTCATGGAGATGTCGGCCAGAAACGCAGCGCAGGTGGAACG
AGCTTTCATCGGGACCGCGGAAAGGGCGGTGTGTGACGACGGAAGAGGGG
CAGGCGTTCGCAGACAAACACGGCTTGCTGTTCATGGAGATGTCGGCCAG
AAACGCAGCGCAGGTGGAACGAGCTTTCATCGGGACCGCGGAAAGGATAT
TCTCGGACCTAGAGGCGCATCCACGCAACAAGCCATCGGGGATCCAGCTG
AAGCCGGAAGAAATGTCGGCTACGTCCAGATTCAAGGCAGAATGCTGTGA
AGGGGTCTGAATATTCTCGGACCTAGAGGCGCATCCACGCAACAAGCCAT
CGGGGATCCAGCTGAAGCCGGAAGAAATGTCGGCTACGTCCAGATTCAAG
GCAGAATGCTGTGAAGGGGTCTGA
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