mRNA_E-fasciculatus_F_contig15677.3932.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15677.3932.1
Unique NamemRNA_E-fasciculatus_F_contig15677.3932.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15677.3932.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.000e-60
Identity = 138/174 (79.31%), Postives = 145/174 (83.33%), Query Frame = 1 
Query:    4 MRGAPLISGGXXXXXXXXXXSASYDALFQGLVGSGCVAGLALLDAARGRPLYENRVDERLPRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELLGARGGGEGPGHRYGLVSPSEGQRLVAAVKGLTDDD-ALCRKQGEHPLTCMGVPFRVFGGTPLGIYAVGPG 522
            M GAPL SGGXXXX      SASYDALFQGLVGSGC+AGLALLDA+RGRPLYENR+D+RLPRPPXXXXXXXXXXXXXXXXXXXXXX              KE++GARGGGEGPG R GLVS SEGQRLVAAVK LTDDD A+CRKQ E PLTCMGVPFRVFGGTPLGIYAVGPG
Sbjct:   65 MLGAPLTSGGXXXXAGSG--SASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDG-------KEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPG 229
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15677.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE1.000e-6079.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15677contigE-fasciculatus_F_contig15677:3..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons2
Model size522
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15677.3932.1prot_E-fasciculatus_F_contig15677.3932.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15677 3..985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.6309586-CDS-E-fasciculatus_F_contig15677:2..1371622928040.6309586-CDS-E-fasciculatus_F_contig15677:2..137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15677 3..137 -
1695995799.7892861-CDS-E-fasciculatus_F_contig15677:2..1371695995799.7892861-CDS-E-fasciculatus_F_contig15677:2..137Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15677 3..137 -
1622928040.6463556-CDS-E-fasciculatus_F_contig15677:601..9851622928040.6463556-CDS-E-fasciculatus_F_contig15677:601..985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15677 602..985 -
1695995799.800101-CDS-E-fasciculatus_F_contig15677:601..9851695995799.800101-CDS-E-fasciculatus_F_contig15677:601..985Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15677 602..985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928040.6624184-UTR-E-fasciculatus_F_contig15677:985..9881622928040.6624184-UTR-E-fasciculatus_F_contig15677:985..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15677 986..988 -
1695995799.8080454-UTR-E-fasciculatus_F_contig15677:985..9881695995799.8080454-UTR-E-fasciculatus_F_contig15677:985..988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15677 986..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15677.3932.1

>prot_E-fasciculatus_F_contig15677.3932.1 ID=prot_E-fasciculatus_F_contig15677.3932.1|Name=mRNA_E-fasciculatus_F_contig15677.3932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp
MRGAPLISGGGGGGGGGGSGSASYDALFQGLVGSGCVAGLALLDAARGRP
LYENRVDERLPRPPPAAGAAAAAAAAATAAAATATAAAAGAAGKGNDDDE
KELLGARGGGEGPGHRYGLVSPSEGQRLVAAVKGLTDDDALCRKQGEHPL
TCMGVPFRVFGGTPLGIYAVGPG
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mRNA from alignment at E-fasciculatus_F_contig15677:3..988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15677.3932.1 ID=mRNA_E-fasciculatus_F_contig15677.3932.1|Name=mRNA_E-fasciculatus_F_contig15677.3932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=986bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15677:3..988- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATGCGTGGAGCCCCTCTGATCAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGGAGCGGCAGTGCTTCTTACGATGCGCTGTTCCAGGGGCTTGTCG
GCAGCGGCTGCGTCGCGGGGCTGGCCCTGCTGGATGCCGCGCGAGGGCGG
CCGCTGTACGAGAACCGAGTTGACGAGCGGTTGCCCCGCCCTCCTCCCGC
CGCCGGCGCAGCAGCAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCTA
CAGCTACAGCAGCAGCTGCGGGAGCAGCAGGGAAGGGTAACGATGATGAC
GAGAAGGAATTACTAGGTGCAAGAGGTGGAGGAGAAGGGCCCGGCCACCG
CTACGGGTTGGTGTCTCCTTCCGAAGGACAGCGGCTGGTAAGCAAGCAAA
GGCGCGTTCAGTCGTTCACTGCCTCCCTGCTAATTGGCACCCTCCTCTAC
CTCGAGGCGTGGCTGCCCTTTCCGTGGTGACCCTCGGTATGTCGGGAGCA
CACCGGCGACAGAATGCTTGAATCACACGAAACTGAGATAAGTCTGTCCT
TATGGCCACCACAAGGGATGCTGCACCATCATGGTCGCATTCGAAGCCTG
CCTCCCCCCCCTCCACACCTACCTCTGGCAAAGCAGGAAGGCACCATCGG
CCATCGATGATAATCGCTCCTGCTGTGGGGACAACAATACCTCCGTCCTC
TCGAGGAGGACGCGTGGTCAATGGCCTAACAGCTAAGGCATGCAAAGCAT
GAGAGTACACCCCCCCCCCCTCCACGAAACCACCACCTCCCGCTCGCCGC
TGCTTTCATCCTCGTCCTCGTTCACCCGACCGGCCTTTTGACGCACAAAA
GGTGGCGGCCGTGAAAGGCTTGACGGATGACGACGCACTCTGCCGCAAGC
AAGGGGAGCACCCCCTGACGTGCATGGGGGTGCCATTCCGAGTATTCGGC
GGGACCCCCCTCGGTATCTACGCGGTCGGTCCCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15677:3..988-

>mRNA_E-fasciculatus_F_contig15677.3932.1 ID=mRNA_E-fasciculatus_F_contig15677.3932.1|Name=mRNA_E-fasciculatus_F_contig15677.3932.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15677:3..988- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGGAGCCCCTCTGATCAGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGGAGCGGCAGTGCTTCTTACGATGCGCTGTTCCAGGGGCTTGTCGGCA
GCGGCTGCGTCGCGGGGCTGGCCCTGCTGGATGCCGCGCGAGGGCGGCCG
CTGTACGAGAACCGAGTTGACGAGCGGTTGCCCCGCCCTCCTCCCGCCGC
CGGCGCAGCAGCAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAG
CTACAGCAGCAGCTGCGGGAGCAGCAGGGAAGGGTAACGATGATGACGAG
AAGGAATTACTAGGTGCAAGAGGTGGAGGAGAAGGGCCCGGCCACCGCTA
CGGGTTGGTGTCTCCTTCCGAAGGACAGCGGCTGATGCGTGGAGCCCCTC
TGATCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAGCGGCAGTGCT
TCTTACGATGCGCTGTTCCAGGGGCTTGTCGGCAGCGGCTGCGTCGCGGG
GCTGGCCCTGCTGGATGCCGCGCGAGGGCGGCCGCTGTACGAGAACCGAG
TTGACGAGCGGTTGCCCCGCCCTCCTCCCGCCGCCGGCGCAGCAGCAGCA
GCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCTACAGCAGCAGCTGC
GGGAGCAGCAGGGAAGGGTAACGATGATGACGAGAAGGAATTACTAGGTG
CAAGAGGTGGAGGAGAAGGGCCCGGCCACCGCTACGGGTTGGTGTCTCCT
TCCGAAGGACAGCGGCTGGTGGCGGCCGTGAAAGGCTTGACGGATGACGA
CGCACTCTGCCGCAAGCAAGGGGAGCACCCCCTGACGTGCATGGGGGTGC
CATTCCGAGTATTCGGCGGGACCCCCCTCGGTATCTACGCGGTCGGTCCC
GGCGTGGCGGCCGTGAAAGGCTTGACGGATGACGACGCACTCTGCCGCAA
GCAAGGGGAGCACCCCCTGACGTGCATGGGGGTGCCATTCCGAGTATTCG
GCGGGACCCCCCTCGGTATCTACGCGGTCGGTCCCGGC
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