mRNA_E-fasciculatus_F_contig15633.3909.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15633.3909.1
Unique NamemRNA_E-fasciculatus_F_contig15633.3909.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 8.600e-57
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 EGVQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPSPFQGLTGDTAPGAAPSMNRQ 309
            EGVQRAEGLIKFMTPEERRTPKLLILDPTS ARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGP GQPSPFQGL GDTAPGAAPSMNRQ
Sbjct:  434 EGVQRAEGLIKFMTPEERRTPKLLILDPTSQARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPGGQPSPFQGLGGDTAPGAAPSMNRQ 536
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A5C9BAS4_9BACT (Signal recognition particle protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A5C9BAS4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.360e-6
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGK 201
            +QR EG+I  MTPEERR P++L      A+R RRIA  AGV++  V+  L +F+  Q  M  MGK
Sbjct:  372 MQRIEGIINSMTPEERRRPEIL-----KASRKRRIAAGAGVQVQDVNRLLNQFEQAQKMMKSMGK 431
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A2SKT4_METPP (Signal recognition particle protein n=7 Tax=Methylibium TaxID=316612 RepID=A2SKT4_METPP)

HSP 1 Score: 53.1 bits (126), Expect = 6.450e-6
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 195
            V+R EG+I+ MTP ERR P+LL      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  378 VRRMEGIIRSMTPLERRKPELL-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 435
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A5C5ZTI1_9BACT (Signal recognition particle protein n=1 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZTI1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.510e-6
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM-GKQMAD 213
            ++R +G+I  MTPEERRTPK++      A+R RRIA  +GV+   +   +K+F+ MQ  M+ M GK M D
Sbjct:  373 LKRLQGVIHSMTPEERRTPKII-----DASRRRRIAAGSGVEPHVIGDLVKQFEPMQQMMTAMAGKGMGD 437
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 52.8 bits (125), Expect = 8.850e-6
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPS 249
            ++ A+ LIK MT +ER  P+LL    ++ +R  RI++ AG         +K+F  M+  MSRM KQM +G    G  GQP+
Sbjct:  372 LKLADSLIKSMTVKERTNPELLYSGGSARSRILRISKGAGRSRDDAEDLVKDFLKMRDMMSRMSKQMVNGQGGPGGSGQPA 452
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A059KHF7_9BURK (Signal recognition particle protein n=5 Tax=Sphaerotilus TaxID=34102 RepID=A0A059KHF7_9BURK)

HSP 1 Score: 52.4 bits (124), Expect = 1.200e-5
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 195
            V+R EG+I+ MTP ERR P+L+      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  363 VRRMEGIIRSMTPLERRKPELI-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 420
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A4Q7VGB3_9BURK (Signal recognition particle protein n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VGB3_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 195
            ++R EG+I+ MTP ERR P+LL      A+R RRIA  AGV++  V+  L +F+ MQ  M +M
Sbjct:  387 MRRMEGIIRSMTPLERRKPELL-----KASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKM 444
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A2E0Z7S1_9CHLR (Signal recognition particle protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0Z7S1_9CHLR)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-5
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGK 201
            ++R E +I+ MTP+ERR PK+L      A+R RR+A  +G  +  V+A LK+FQ M+  M ++ K
Sbjct:  370 LKRIEAIIRSMTPQERRNPKIL-----KASRKRRVAAGSGTTVQDVNALLKQFQEMKKMMKQLTK 429
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A0S8K7A5_9CHLR (Signal recognition particle protein n=1 Tax=Anaerolineae bacterium SM23_84 TaxID=1703388 RepID=A0A0S8K7A5_9CHLR)

HSP 1 Score: 50.8 bits (120), Expect = 4.160e-5
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRMGKQMADG 216
            ++R E +I+ MTPEERR P+++     S +R RRIAR +G  +S ++  L +F+ MQ    R+ KQ++ G
Sbjct:  370 MKRTEAIIRSMTPEERRNPRII-----SGSRKRRIARGSGTSVSEINQLLNQFRQMQ----RLMKQLSSG 430
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Match: A0A1E4IDX8_9BURK (Signal recognition particle protein n=1 Tax=Rubrivivax sp. SCN 71-131 TaxID=1660138 RepID=A0A1E4IDX8_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 4.180e-5
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    7 VQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSAFLKEFQAMQSNMSRM 195
            V+R EG+I+ MTP ERR P+L+      A+R RRIA  AGV++  V+  L +F  MQ  M +M
Sbjct:  373 VRRMEGIIRSMTPLERRKPELI-----KASRKRRIASGAGVQVQEVNRLLNQFGQMQGMMKKM 430
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15633.3909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LN22_ECTSI8.600e-5797.09PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A5C9BAS4_9BACT1.360e-647.69Signal recognition particle protein n=1 Tax=bacter... [more]
A2SKT4_METPP6.450e-647.62Signal recognition particle protein n=7 Tax=Methyl... [more]
A0A5C5ZTI1_9BACT6.510e-644.29Signal recognition particle protein n=1 Tax=Pseudo... [more]
A0A2V3IRY4_9FLOR8.850e-638.27Signal recognition particle protein n=1 Tax=Gracil... [more]
A0A059KHF7_9BURK1.200e-546.03Signal recognition particle protein n=5 Tax=Sphaer... [more]
A0A4Q7VGB3_9BURK1.650e-546.03Signal recognition particle protein n=1 Tax=Riviba... [more]
A0A2E0Z7S1_9CHLR3.050e-541.54Signal recognition particle protein n=1 Tax=Anaero... [more]
A0A0S8K7A5_9CHLR4.160e-540.00Signal recognition particle protein n=1 Tax=Anaero... [more]
A0A1E4IDX8_9BURK4.180e-546.03Signal recognition particle protein n=1 Tax=Rubriv... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15633contigE-fasciculatus_F_contig15633:1127..2620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue6.4e-48
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPFfh, plastid Ffh subunit of the signal recognition particle
Ec32 orthologEc-13_002170.1
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928037.6799326-CDS-E-fasciculatus_F_contig15633:1126..12731622928037.6799326-CDS-E-fasciculatus_F_contig15633:1126..1273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15633 1127..1273 +
1695995798.420131-CDS-E-fasciculatus_F_contig15633:1126..12731695995798.420131-CDS-E-fasciculatus_F_contig15633:1126..1273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15633 1127..1273 +
1622928037.6940231-CDS-E-fasciculatus_F_contig15633:2458..26201622928037.6940231-CDS-E-fasciculatus_F_contig15633:2458..2620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15633 2459..2620 +
1695995798.4330058-CDS-E-fasciculatus_F_contig15633:2458..26201695995798.4330058-CDS-E-fasciculatus_F_contig15633:2458..2620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15633 2459..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15633.3909.1prot_E-fasciculatus_F_contig15633.3909.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15633 1127..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15633.3909.1

>prot_E-fasciculatus_F_contig15633.3909.1 ID=prot_E-fasciculatus_F_contig15633.3909.1|Name=mRNA_E-fasciculatus_F_contig15633.3909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
EGVQRAEGLIKFMTPEERRTPKLLILDPTSAARCRRIARDAGVKLSAVSA
FLKEFQAMQSNMSRMGKQMADGDPNAGPEGQPSPFQGLTGDTAPGAAPSM
NRQ
back to top

mRNA from alignment at E-fasciculatus_F_contig15633:1127..2620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15633.3909.1 ID=mRNA_E-fasciculatus_F_contig15633.3909.1|Name=mRNA_E-fasciculatus_F_contig15633.3909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1494bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15633:1127..2620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGCGTTCAGCGGGCGGAGGGTCTGATCAAGTTCATGACGCCGGAGGA
GCGGCGTACCCCCAAGCTCCTCATCCTTGACCCTACCTCGGCGGCGCGGT
GCAGGAGGATAGCCAGGGACGCCGGCGTCAAGCTCTCGGCCGTTAGCGTG
AGTATGTCCCATGTCCTGCTGTTGTGTCTGTGCATTTGCTCTCCGTGCGA
TTTTTGTTGTTCGGATGTGCTTCGTGTTTTGCCGTCAAGCACTGCTGCTG
CCGTAAGCGTGAGTATGTCCCATGCCCTGCTGCTGTGTGTGTGCATTTGC
TCTCCGTCGTTGTAGTGTGCGTTTTGTTGTTCGGATGTGCTTCGTGTTTT
GCCGTCAAGCACTGCTGCCGTCAGCGTGAGGTATGTCCCATGCCCTGCTG
CTGTGTGTGTGCATTTGCTCTCCGTCGTTGTAGTGTGCGTTTTGGTTGTT
CGGATGTAGTTCGTGTTTTGCCGTCAAGCTCTGCTGTACCTACGCTCCCG
TTAGTATGTTTTCTCTTGTTGGAATGTATTATAGTATGTTTTCTCTCTTT
GGAATTTTAGTATGTTTTCTCTTTTTTGAATGTAGTATGTTTTCTCTTTT
TGGAATGTTATTATGTTTTCTCTTGTTGGAATGTTAGTATGTTTTCTCTT
GTTGGAATGTTAGTATGTTTTCTCTTTTTTGAATGTAGTATGTTTTCTCT
TGTTGGAATGTTAGTATGTTTTCTCTTGTTGGAATGTTAGTATGTTTTCG
CTTTTTGGAATGTAGTATGTTTTCTCTTTTTGGAATGTAGTATGTTTTCT
CTTGTTGGAATGTAGTATGTTTTCTCTTGTTGGAATGTAGTATGTTTTCT
CTTGTTGGAATGTTAGTATGTTTTCTCTTGTTGGAATGTAGTATGTTTTC
TCTTGTTGGAATGTAGTATGTTTTCTCTTTTTGGAATGTTGTTCGTGATT
GTGTGCATCCTACGGTGTCCGAGTAGCGTAGCGTCCCAACAGGGGGTTAC
AAGGATGACGACACATGTAATTCTCTGCCAGAACATGAAATAGAGCCAGT
ACAATTTTTTGTTGTATTTGTTGAGCTGGGCAGGAAACGAGGCTCATCAG
CTGTTGAAAATCAGAGCAAATGATGTGCTATGTGCTATGTCTGTACCTTA
GCTACCAAGAGACAACGGCGTGCTTGTTTGTGTTTGTCTGTCTGTAAATT
AACCACCTTGCGAGAAACGCTACGTGCCATGTTTACTTGCGTCTTAGCTT
TGCATAACTTGGCACGACGCGCCCTTTCTTTTTTTGCTTGTGTCTTTTTG
CTTACCTTTCCTCTGCTCTTTTATTTTGGCAGGCGTTCCTCAAGGAGTTC
CAGGCGATGCAGAGCAACATGTCGAGGATGGGCAAGCAGATGGCCGACGG
CGACCCCAACGCCGGTCCTGAGGGGCAGCCTTCCCCCTTCCAAGGCCTCA
CGGGCGACACCGCTCCGGGAGCCGCGCCTTCGATGAACAGGCAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15633:1127..2620+

>mRNA_E-fasciculatus_F_contig15633.3909.1 ID=mRNA_E-fasciculatus_F_contig15633.3909.1|Name=mRNA_E-fasciculatus_F_contig15633.3909.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15633:1127..2620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGCGTTCAGCGGGCGGAGGGTCTGATCAAGTTCATGACGCCGGAGGA
GCGGCGTACCCCCAAGCTCCTCATCCTTGACCCTACCTCGGCGGCGCGGT
GCAGGAGGATAGCCAGGGACGCCGGCGTCAAGCTCTCGGCCGTTAGCGAG
GGCGTTCAGCGGGCGGAGGGTCTGATCAAGTTCATGACGCCGGAGGAGCG
GCGTACCCCCAAGCTCCTCATCCTTGACCCTACCTCGGCGGCGCGGTGCA
GGAGGATAGCCAGGGACGCCGGCGTCAAGCTCTCGGCCGTTAGCGCGTTC
CTCAAGGAGTTCCAGGCGATGCAGAGCAACATGTCGAGGATGGGCAAGCA
GATGGCCGACGGCGACCCCAACGCCGGTCCTGAGGGGCAGCCTTCCCCCT
TCCAAGGCCTCACGGGCGACACCGCTCCGGGAGCCGCGCCTTCGATGAAC
AGGCAAGCGTTCCTCAAGGAGTTCCAGGCGATGCAGAGCAACATGTCGAG
GATGGGCAAGCAGATGGCCGACGGCGACCCCAACGCCGGTCCTGAGGGGC
AGCCTTCCCCCTTCCAAGGCCTCACGGGCGACACCGCTCCGGGAGCCGCG
CCTTCGATGAACAGGCAA
back to top