mRNA_E-fasciculatus_F_contig15609.3895.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15609.3895.1
Unique NamemRNA_E-fasciculatus_F_contig15609.3895.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15609.3895.1 vs. uniprot
Match: A0A6H5LF69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF69_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.070e-20
Identity = 60/85 (70.59%), Postives = 60/85 (70.59%), Query Frame = -2 
Query:    3 KEGLGERKRGSAVAGLAELGFEVGIVGVLGSGSKESRKGPTAAMTAVSTGTTAVARGRTSSGLDRDQLGRAAGGRGDVTPGGGEI 257
            KEGL ERKRGSAVAGLAELGFEVGIVGVLGSGSKESRKG  AA T VSTG                 LGRAA GR DVT GGGEI
Sbjct:  892 KEGLSERKRGSAVAGLAELGFEVGIVGVLGSGSKESRKGSMAATTVVSTGXXXXXXXXXXXXXXXXXLGRAASGRSDVTAGGGEI 976
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15609.3895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LF69_9PHAE1.070e-2070.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15609contigE-fasciculatus_F_contig15609:162..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928034.498133-CDS-E-fasciculatus_F_contig15609:161..5061622928034.498133-CDS-E-fasciculatus_F_contig15609:161..506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15609 162..506 +
1695995797.686219-CDS-E-fasciculatus_F_contig15609:161..5061695995797.686219-CDS-E-fasciculatus_F_contig15609:161..506Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15609 162..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15609.3895.1prot_E-fasciculatus_F_contig15609.3895.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15609 162..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15609.3895.1

>prot_E-fasciculatus_F_contig15609.3895.1 ID=prot_E-fasciculatus_F_contig15609.3895.1|Name=mRNA_E-fasciculatus_F_contig15609.3895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
EISPPPGVTSPRPPAALPSWSRSRPDDVLPLATAVVPVDTAVIAAVGPFR
DSFEPDPSTPTMPTSKPSSASPATALPRFLSPRPSLAPPPLAAPPAPPPG
QAEPFPVAGGDVPTA
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mRNA from alignment at E-fasciculatus_F_contig15609:162..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15609.3895.1 ID=mRNA_E-fasciculatus_F_contig15609.3895.1|Name=mRNA_E-fasciculatus_F_contig15609.3895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=345bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15609:162..506+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAATCTCTCCGCCGCCCGGGGTCACATCTCCGCGGCCGCCCGCTGCCCT
GCCGAGCTGGTCCCGGTCGAGGCCCGATGACGTTCTCCCTCTCGCTACCG
CCGTAGTCCCGGTCGATACCGCAGTCATTGCCGCCGTTGGCCCCTTCCGG
GATTCCTTCGAGCCCGACCCCAGCACCCCGACAATGCCAACCTCGAAGCC
GAGCTCCGCCAGCCCCGCCACAGCGCTGCCCCGCTTCCTCTCGCCGAGAC
CTTCCTTGGCCCCGCCGCCGCTAGCGGCCCCGCCGGCGCCGCCACCAGGC
CAAGCAGAGCCCTTTCCTGTCGCGGGCGGCGACGTGCCAACAGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15609:162..506+

>mRNA_E-fasciculatus_F_contig15609.3895.1 ID=mRNA_E-fasciculatus_F_contig15609.3895.1|Name=mRNA_E-fasciculatus_F_contig15609.3895.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15609:162..506+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAAATCTCTCCGCCGCCCGGGGTCACATCTCCGCGGCCGCCCGCTGCCCT
GCCGAGCTGGTCCCGGTCGAGGCCCGATGACGTTCTCCCTCTCGCTACCG
CCGTAGTCCCGGTCGATACCGCAGTCATTGCCGCCGTTGGCCCCTTCCGG
GATTCCTTCGAGCCCGACCCCAGCACCCCGACAATGCCAACCTCGAAGCC
GAGCTCCGCCAGCCCCGCCACAGCGCTGCCCCGCTTCCTCTCGCCGAGAC
CTTCCTTGGCCCCGCCGCCGCTAGCGGCCCCGCCGGCGCCGCCACCAGGC
CAAGCAGAGCCCTTTCCTGTCGCGGGCGGCGACGTGCCAACAGCAGAAAT
CTCTCCGCCGCCCGGGGTCACATCTCCGCGGCCGCCCGCTGCCCTGCCGA
GCTGGTCCCGGTCGAGGCCCGATGACGTTCTCCCTCTCGCTACCGCCGTA
GTCCCGGTCGATACCGCAGTCATTGCCGCCGTTGGCCCCTTCCGGGATTC
CTTCGAGCCCGACCCCAGCACCCCGACAATGCCAACCTCGAAGCCGAGCT
CCGCCAGCCCCGCCACAGCGCTGCCCCGCTTCCTCTCGCCGAGACCTTCC
TTGGCCCCGCCGCCGCTAGCGGCCCCGCCGGCGCCGCCACCAGGCCAAGC
AGAGCCCTTTCCTGTCGCGGGCGGCGACGTGCCAACAGCA
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