mRNA_E-fasciculatus_F_contig156.3888.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig156.3888.1
Unique NamemRNA_E-fasciculatus_F_contig156.3888.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig156.3888.1 vs. uniprot
Match: D7G6E2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E2_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 9.100e-60
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 MLCSQRAMPRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRRAEAASLLERAVEICSGSMGEDSALTRAAVHRLAQVFYDDQRFGAAEATLRKGESNARKQFPTELLLLSKAQV 357
            ML SQRA+PRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRR EAASLLERAVEICSGSMGED ALTRAAVHRLAQV YDDQRFGAAEA LRKGESNARKQFPTELLLLSKAQ+
Sbjct:    1 MLLSQRAIPRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRRTEAASLLERAVEICSGSMGEDCALTRAAVHRLAQVLYDDQRFGAAEAILRKGESNARKQFPTELLLLSKAQL 119
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig156.3888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6E2_ECTSI9.100e-6094.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig156contigE-fasciculatus_F_contig156:365..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-10_001530.1
Exons2
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928032.1333354-CDS-E-fasciculatus_F_contig156:364..4881622928032.1333354-CDS-E-fasciculatus_F_contig156:364..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig156 365..488 -
1695995796.190209-CDS-E-fasciculatus_F_contig156:364..4881695995796.190209-CDS-E-fasciculatus_F_contig156:364..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig156 365..488 -
1622928032.14668-CDS-E-fasciculatus_F_contig156:665..8981622928032.14668-CDS-E-fasciculatus_F_contig156:665..898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig156 666..898 -
1695995796.201946-CDS-E-fasciculatus_F_contig156:665..8981695995796.201946-CDS-E-fasciculatus_F_contig156:665..898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig156 666..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig156.3888.1prot_E-fasciculatus_F_contig156.3888.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig156 365..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig156.3888.1

>prot_E-fasciculatus_F_contig156.3888.1 ID=prot_E-fasciculatus_F_contig156.3888.1|Name=mRNA_E-fasciculatus_F_contig156.3888.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
MLCSQRAMPRMRRLLSSSSDQAAEANAQLESLHEVSTAVDLAALGRRAEA
ASLLERAVEICSGSMGEDSALTRAAVHRLAQVFYDDQRFGAAEATLRKGE
SNARKQFPTELLLLSKAQV
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mRNA from alignment at E-fasciculatus_F_contig156:365..898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig156.3888.1 ID=mRNA_E-fasciculatus_F_contig156.3888.1|Name=mRNA_E-fasciculatus_F_contig156.3888.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig156:365..898- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTTGCTCGCAGCGGGCAATGCCTCGAATGCGCCGCCTGTTGTCTTC
ATCCTCGGATCAGGCGGCGGAGGCGAATGCGCAACTCGAGTCCCTGCACG
AAGTTAGCACAGCAGTAGATCTAGCCGCTCTAGGCCGTCGTGCCGAAGCA
GCGTCTCTCTTGGAGCGGGCTGTCGAAATATGCTCCGGGTCTATGGGAGA
GGATAGCGCGCTCACCCGAGCCGCTGTGCATAGGTAGGGTGCTCCGCTTG
GGTGTCTTTGGGCTACTCGACATGCCAACCGTATCGAGCGTGAGCCGACT
GCCTTTACTGTTATATGCCGTTGTGAATGTATATCCTCTAACATGTCTTG
GGGTGTGCTGCGGAAGCTTCTTCAATCTGTTTGCTCTGTTGCAACCCGTA
CGTGCTCCAGGCTGGCGCAAGTTTTTTACGACGACCAGCGATTCGGGGCG
GCAGAAGCGACCCTCCGAAAGGGAGAATCTAATGCTCGGAAACAGTTCCC
GACTGAGCTGCTCCTACTTTCCAAGGCTCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig156:365..898-

>mRNA_E-fasciculatus_F_contig156.3888.1 ID=mRNA_E-fasciculatus_F_contig156.3888.1|Name=mRNA_E-fasciculatus_F_contig156.3888.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig156:365..898- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTTTGCTCGCAGCGGGCAATGCCTCGAATGCGCCGCCTGTTGTCTTC
ATCCTCGGATCAGGCGGCGGAGGCGAATGCGCAACTCGAGTCCCTGCACG
AAGTTAGCACAGCAGTAGATCTAGCCGCTCTAGGCCGTCGTGCCGAAGCA
GCGTCTCTCTTGGAGCGGGCTGTCGAAATATGCTCCGGGTCTATGGGAGA
GGATAGCGCGCTCACCCGAGCCGCTGTGCATAGATGCTTTGCTCGCAGCG
GGCAATGCCTCGAATGCGCCGCCTGTTGTCTTCATCCTCGGATCAGGCGG
CGGAGGCGAATGCGCAACTCGAGTCCCTGCACGAAGTTAGCACAGCAGTA
GATCTAGCCGCTCTAGGCCGTCGTGCCGAAGCAGCGTCTCTCTTGGAGCG
GGCTGTCGAAATATGCTCCGGGTCTATGGGAGAGGATAGCGCGCTCACCC
GAGCCGCTGTGCATAGGCTGGCGCAAGTTTTTTACGACGACCAGCGATTC
GGGGCGGCAGAAGCGACCCTCCGAAAGGGAGAATCTAATGCTCGGAAACA
GTTCCCGACTGAGCTGCTCCTACTTTCCAAGGCTCAGGTGGCTGGCGCAA
GTTTTTTACGACGACCAGCGATTCGGGGCGGCAGAAGCGACCCTCCGAAA
GGGAGAATCTAATGCTCGGAAACAGTTCCCGACTGAGCTGCTCCTACTTT
CCAAGGCTCAGGTG
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