mRNA_E-fasciculatus_F_contig15584.3882.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15584.3882.1
Unique NamemRNA_E-fasciculatus_F_contig15584.3882.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A6H5JDR1_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDR1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.870e-32
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   85 MNTCAAPGCMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQRGATDSAAALQG 270
            MNTCAAPGCME TSQRCSSCKT KYCSRECQRRDWIVGGHKDRCRELA+QRGATDS AALQG
Sbjct:    1 MNTCAAPGCMELTSQRCSSCKTAKYCSRECQRRDWIVGGHKDRCRELARQRGATDSEAALQG 62
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A383WM21_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WM21_TETOB)

HSP 1 Score: 56.6 bits (135), Expect = 3.050e-6
Identity = 31/76 (40.79%), Postives = 38/76 (50.00%), Query Frame = 1 
Query:  109 CMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQRGATDSAAALQGYDRHTAL**RPTDRWQLTSCPP 336
            C +PT+  CS CK+ KYCS  CQR+DW    HK  C  L +Q  A  +AAAL     H      P     L+  PP
Sbjct:   68 CSKPTTTHCSRCKSVKYCSIACQRKDW-GSNHKFECDNLQKQAAAQTAAAALGSSSGH------PASNGSLSKPPP 136
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A5E3WUP8_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WUP8_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 3.740e-6
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  115 EPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCREL 225
            +PT+++C+ C  T+YCSRECQ RDW  GGHK RC+ +
Sbjct:  478 KPTTKKCTGCAETRYCSRECQLRDWKEGGHKARCKRI 514
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A165YVF0_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A165YVF0_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 1.660e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:  118 PTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCREL 225
            P  ++C+ C  T+YCSRECQ RDW  GGHK RC+ +
Sbjct:  109 PAVKKCAGCGETRYCSRECQSRDWKQGGHKARCKRV 144
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A166DND2_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166DND2_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 3.200e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:  115 EPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCREL 225
            +P  ++C+ C  T+YCSRECQ RDW  GGHK RC+ L
Sbjct:  504 KPAVKKCAGCGETRYCSRECQSRDWKRGGHKARCKRL 540
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A166HFU9_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166HFU9_9AGAM)

HSP 1 Score: 53.1 bits (126), Expect = 4.340e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:  106 GCMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRC 216
            G  EP++ RCS C+ T+YCS ECQ+RDW  G HK  C
Sbjct:  504 GATEPSTSRCSGCRETRYCSTECQKRDWKHGRHKAHC 540
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A0K2UTT6_LEPSM (Uncharacterized protein n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UTT6_LEPSM)

HSP 1 Score: 52.8 bits (125), Expect = 4.820e-5
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  109 CMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQRGAT 246
            C+    ++CSSC+   YCS+ECQ++DW  GGH++ CR L  ++ ++
Sbjct:   21 CLNLALRKCSSCRVVYYCSKECQKKDWRAGGHREVCRPLDNKKDSS 66
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BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A7R8CPM2_LEPSM (AHI1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CPM2_LEPSM)

HSP 1 Score: 52.8 bits (125), Expect = 6.380e-5
Identity = 19/46 (41.30%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  109 CMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQRGAT 246
            C+    ++CSSC+   YCS+ECQ++DW  GGH++ CR L  ++ ++
Sbjct:   21 CLNLALRKCSSCRVVYYCSKECQKKDWRAGGHREVCRPLDNKKDSS 66
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A166I4A5_9AGAM (MYND-type domain-containing protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166I4A5_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 6.400e-5
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:  121 TSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCREL 225
            T + C  C   +YC RECQRRDW  GGHK++CR L
Sbjct:  162 TLKACKGCGEVRYCGRECQRRDWNKGGHKEKCRRL 196
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Match: A0A699YRS0_HAELA (MYND-type domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YRS0_HAELA)

HSP 1 Score: 47.8 bits (112), Expect = 9.330e-5
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:  130 RCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQRGA 243
            RCS+CK T+YCS+ECQ R W  G HK +C  L +Q GA
Sbjct:    2 RCSACKCTRYCSKECQARAWKQG-HKQQCSLLKKQAGA 38
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15584.3882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JDR1_9PHAE1.870e-3293.55MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A383WM21_TETOB3.050e-640.79Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A5E3WUP8_9AGAM3.740e-656.76MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A165YVF0_9AGAM1.660e-555.56MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A166DND2_9AGAM3.200e-556.76MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A166HFU9_9AGAM4.340e-556.76MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A0K2UTT6_LEPSM4.820e-541.30Uncharacterized protein n=1 Tax=Lepeophtheirus sal... [more]
A0A7R8CPM2_LEPSM6.380e-541.30AHI1 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 R... [more]
A0A166I4A5_9AGAM6.400e-557.14MYND-type domain-containing protein n=1 Tax=Peniop... [more]
A0A699YRS0_HAELA9.330e-557.89MYND-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15584contigE-fasciculatus_F_contig15584:2312..2962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15584.3882.1prot_E-fasciculatus_F_contig15584.3882.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15584 2396..2749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.6514833-UTR-E-fasciculatus_F_contig15584:2311..23951622928031.6514833-UTR-E-fasciculatus_F_contig15584:2311..2395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15584 2312..2395 +
1695995795.9037464-UTR-E-fasciculatus_F_contig15584:2311..23951695995795.9037464-UTR-E-fasciculatus_F_contig15584:2311..2395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15584 2312..2395 +
1622928031.6925988-UTR-E-fasciculatus_F_contig15584:2749..29621622928031.6925988-UTR-E-fasciculatus_F_contig15584:2749..2962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15584 2750..2962 +
1695995795.934665-UTR-E-fasciculatus_F_contig15584:2749..29621695995795.934665-UTR-E-fasciculatus_F_contig15584:2749..2962Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15584 2750..2962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.6650968-CDS-E-fasciculatus_F_contig15584:2395..24571622928031.6650968-CDS-E-fasciculatus_F_contig15584:2395..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15584 2396..2457 +
1695995795.9141088-CDS-E-fasciculatus_F_contig15584:2395..24571695995795.9141088-CDS-E-fasciculatus_F_contig15584:2395..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15584 2396..2457 +
1622928031.677191-CDS-E-fasciculatus_F_contig15584:2601..27491622928031.677191-CDS-E-fasciculatus_F_contig15584:2601..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15584 2602..2749 +
1695995795.926263-CDS-E-fasciculatus_F_contig15584:2601..27491695995795.926263-CDS-E-fasciculatus_F_contig15584:2601..2749Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15584 2602..2749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15584.3882.1

>prot_E-fasciculatus_F_contig15584.3882.1 ID=prot_E-fasciculatus_F_contig15584.3882.1|Name=mRNA_E-fasciculatus_F_contig15584.3882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=70bp
MNTCAAPGCMEPTSQRCSSCKTTKYCSRECQRRDWIVGGHKDRCRELAQQ
RGATDSAAALQGYDRHTAL*
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mRNA from alignment at E-fasciculatus_F_contig15584:2312..2962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15584.3882.1 ID=mRNA_E-fasciculatus_F_contig15584.3882.1|Name=mRNA_E-fasciculatus_F_contig15584.3882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=651bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15584:2312..2962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TAGCAGAGCACACACTCCCGCACACACTCGCCTGCTTGCCTCTCCTTCTT
CCTTGGCCAAGACTCGTGCAGGTCGAGCTCTCCGATGAATACTTGTGCAG
CGCCAGGCTGCATGGAGCCTACCTCACAGAGATGCTCCAGCTGCAAGTGA
GTACGTTCCGTTTTCTCCTCTGTTTTGTGCTACTGCTTGTAGGTGTGGTT
GGTCGATCAGTCGCACGCGGACACAAACGGCCGCCTGCCCTTGAAACTCT
TCTTGCCATATGCCCGCATACGTGAACCCTTTCCTCACAGGACTACCAAG
TATTGCTCGAGAGAGTGTCAACGCCGGGACTGGATCGTCGGGGGCCACAA
AGACCGTTGCCGAGAGCTCGCCCAGCAGCGAGGAGCGACCGATAGCGCAG
CAGCACTGCAAGGGTACGACAGACACACTGCTTTGTAATAAAGACCGACT
GACAGATGGCAGCTGACTTCGTGCCCCCCCAACTGCAGTCATTGTTGTGC
TGTTGGTGTACTGCAGGGAGGAATCGAGAGCGGGAGGGCGTAACAACAAC
CTTGTGAAAGAATGTATCGTGTCTTGGTCCTTAGCTGCAATCTCTTCCGG
CATGTCGCGGACGATGTTCTCGTCCACCAAATACATTTTTTCCGGGGGTT
T
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15584:2312..2962+

>mRNA_E-fasciculatus_F_contig15584.3882.1 ID=mRNA_E-fasciculatus_F_contig15584.3882.1|Name=mRNA_E-fasciculatus_F_contig15584.3882.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=420bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15584:2312..2962+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATACTTGTGCAGCGCCAGGCTGCATGGAGCCTACCTCACAGAGATG
CTCCAGCTGCAAATGAATACTTGTGCAGCGCCAGGCTGCATGGAGCCTAC
CTCACAGAGATGCTCCAGCTGCAAGACTACCAAGTATTGCTCGAGAGAGT
GTCAACGCCGGGACTGGATCGTCGGGGGCCACAAAGACCGTTGCCGAGAG
CTCGCCCAGCAGCGAGGAGCGACCGATAGCGCAGCAGCACTGCAAGGGTA
CGACAGACACACTGCTTTGTAAGACTACCAAGTATTGCTCGAGAGAGTGT
CAACGCCGGGACTGGATCGTCGGGGGCCACAAAGACCGTTGCCGAGAGCT
CGCCCAGCAGCGAGGAGCGACCGATAGCGCAGCAGCACTGCAAGGGTACG
ACAGACACACTGCTTTGTAA
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