mRNA_E-fasciculatus_F_contig1558.3881.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1558.3881.1
Unique NamemRNA_E-fasciculatus_F_contig1558.3881.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.180e-34
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    4 DAVVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            DAV+HHLSYVRVEEDIRRKMATFSHAGEEQ GWYERSWLGWAANNSLTDLHPVIPVAYKRVV QP
Sbjct:  852 DAVLHHLSYVRVEEDIRRKMATFSHAGEEQSGWYERSWLGWAANNSLTDLHPVIPVAYKRVVPQP 916
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.610e-34
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    4 DAVVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            DAVVHHLSYVRVEEDIRRKMATFSHAGEEQ GWYERSWLGWA N+SLTDLHPVIPVAYKRVV QP
Sbjct:  814 DAVVHHLSYVRVEEDIRRKMATFSHAGEEQSGWYERSWLGWATNHSLTDLHPVIPVAYKRVVPQP 878
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A3A0FWX9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0FWX9_9PROT)

HSP 1 Score: 83.6 bits (205), Expect = 3.130e-17
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   10 VVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            V HHLSY R +E+++RK+++FSH+ +   GWYE+ WLGW  N+ L DLHP  P AYKR V QP
Sbjct:  474 VCHHLSYARSDEEVKRKISSFSHSHQLVDGWYEKVWLGWDENHGLEDLHPCWPTAYKRAVRQP 536
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A7V4W9K4_9BACT (Glycosyltransferase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4W9K4_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 1.850e-15
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   16 HHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            HHLSY R +E I RK+ATFSHA E + GW++  W  W +N+SLT+LHP  P AY+R + QP
Sbjct:  402 HHLSYARNDEQILRKIATFSHADEIRDGWFQTIWKRWDSNHSLTNLHPTHPPAYRRAIEQP 462
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A7V3L3Q7_9BACT (Glycosyltransferase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3L3Q7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 VVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            + HHLSY R +E++ RK+ATFSHA E    WYE  W  W  N+SL  LHP  P AY R V QP
Sbjct:  426 ICHHLSYARSDEELLRKLATFSHAHELVDSWYENVWKAWDKNHSLCYLHPTHPSAYLRAVLQP 488
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A7X9ILM3_9DELT (Glycosyltransferase family 2 protein n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A7X9ILM3_9DELT)

HSP 1 Score: 67.8 bits (164), Expect = 1.140e-11
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 VVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVSQP 198
            V+HH+SY R + +I RK++TFSHA +    WYE  W  W  N  L +LHP  P AY+ VV  P
Sbjct:  472 VMHHMSYARSDNEILRKISTFSHADQMIPNWYENVWKAWDENMQLRNLHPCWPDAYQEVVGVP 534
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A7X7L3A3_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X7L3A3_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 3.090e-10
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   16 HHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVV 189
            HHLSY R +E I+RK+ +FSHA +    WYER W  W  ++ +TDL P  P  ++R V
Sbjct:  159 HHLSYARSDEQIQRKLRSFSHADQIPSDWYERVWKAWDFDHGITDLCPYNPGVFQRAV 216
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: X1EYC1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1EYC1_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 1.850e-8
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   22 LSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTDLHPVIPVAYKRVVS 192
            +SYVR +E++ RK+ +FSHA +   GWYE  WL W   N +T+LHP     +K+ +S
Sbjct:    1 MSYVRSDEEMLRKIQSFSHAKDIFSGWYENIWLKW--RNDMTNLHPSKVGDFKKTIS 55
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BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Match: A0A846QLU3_9DELT (Uncharacterized protein n=1 Tax=Desulfobaculum xiamenense TaxID=995050 RepID=A0A846QLU3_9DELT)

HSP 1 Score: 48.5 bits (114), Expect = 6.690e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    4 DAVVHHLSYVRVEEDIRRKMATFSHAGE-EQVGWYERSWLGWAANNSLTDLHPVIP 168
            D + +HLSYVR +E I RK+ T+SHA + +   WY+  WL W       +LHPV P
Sbjct:  179 DGICYHLSYVRSDEYIYRKLNTWSHARDFDTERWYQDKWLRWYPGKR--NLHPVEP 232
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1558.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FK33_ECTSI1.180e-3495.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN8_9PHAE7.610e-3493.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3A0FWX9_9PROT3.130e-1755.56Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7V4W9K4_9BACT1.850e-1555.74Glycosyltransferase n=1 Tax=Armatimonadetes bacter... [more]
A0A7V3L3Q7_9BACT1.070e-1353.97Glycosyltransferase n=1 Tax=Armatimonadetes bacter... [more]
A0A7X9ILM3_9DELT1.140e-1147.62Glycosyltransferase family 2 protein n=1 Tax=SAR32... [more]
A0A7X7L3A3_9DELT3.090e-1046.55Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
X1EYC1_9ZZZZ1.850e-843.86Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A846QLU3_9DELT6.690e-544.64Uncharacterized protein n=1 Tax=Desulfobaculum xia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1558contigE-fasciculatus_F_contig1558:16567..17311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FK33
EggNOG OGs2EN0C@1,2SRIN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.5825307-CDS-E-fasciculatus_F_contig1558:16566..166691622928031.5825307-CDS-E-fasciculatus_F_contig1558:16566..16669Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 16567..16669 -
1695995795.879739-CDS-E-fasciculatus_F_contig1558:16566..166691695995795.879739-CDS-E-fasciculatus_F_contig1558:16566..16669Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 16567..16669 -
1622928031.6085505-CDS-E-fasciculatus_F_contig1558:17216..173111622928031.6085505-CDS-E-fasciculatus_F_contig1558:17216..17311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 17217..17311 -
1695995795.893254-CDS-E-fasciculatus_F_contig1558:17216..173111695995795.893254-CDS-E-fasciculatus_F_contig1558:17216..17311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1558 17217..17311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1558.3881.1prot_E-fasciculatus_F_contig1558.3881.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1558 16567..17311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1558.3881.1

>prot_E-fasciculatus_F_contig1558.3881.1 ID=prot_E-fasciculatus_F_contig1558.3881.1|Name=mRNA_E-fasciculatus_F_contig1558.3881.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
TDAVVHHLSYVRVEEDIRRKMATFSHAGEEQVGWYERSWLGWAANNSLTD
LHPVIPVAYKRVVSQP
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mRNA from alignment at E-fasciculatus_F_contig1558:16567..17311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1558.3881.1 ID=mRNA_E-fasciculatus_F_contig1558.3881.1|Name=mRNA_E-fasciculatus_F_contig1558.3881.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=745bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1558:16567..17311- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTGATGCGGTGGTTCATCACCTGAGCTACGTTAGGGTGGAAGAAGACAT
ACGGCGAAAAATGGCAACATTTTCTCACGCCGGGGAGGAACAGGTGTGTA
GCGGTGCGGGCCTCATCATGCAGTATTTTCTGTTCTGGGGTAGGTTGAGC
AATCTTGTTTCTTCGTACCTCCTAGCAGCAGGTTTTGCCACCGTTCCAGA
ACCCCTCGCCTCGAGAAATGAAAACCCGCGGTTTTCGAGCGGTTCGATAG
TTTAGGGCATGGTGTATACGACCGAGAAAAAAAATCGATTGCGCATCGCT
ACCGTGCAATCAGAGTTCGGTATGTGACAAAGAAATAGAAGTGCAGAAAT
CAGAGATAAATGCGCCGTGAGGGGTAGCACTCACCCCGAGGGCGTGACAT
CGGCCCGTCCAACATTGGTGGCGCGGCTCCGGATATTGCTATTGCTGGCA
ACTGACTTTCCGGTCCGCAGCAGAGTTTGTAAGGCCGTGTCTCGACGAAT
AAAAATCGAATCGTTCACGCGTACGCCGCATCGATATAAACTCAACAACT
GAGTCCTCTGCGCCGCTTTCACGCGTTCCCTACCTCCTCACGTACGTTCG
CGGCACCCAATCTTGTGTTCTCCCCGCGTGTGGTACCCAGAGCGGATGGT
ACGAGAGAAGTTGGCTTGGCTGGGCGGCCAACAACTCACTGACGGATCTC
CATCCTGTGATTCCTGTGGCTTATAAGCGGGTCGTGTCTCAGCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1558:16567..17311-

>mRNA_E-fasciculatus_F_contig1558.3881.1 ID=mRNA_E-fasciculatus_F_contig1558.3881.1|Name=mRNA_E-fasciculatus_F_contig1558.3881.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1558:16567..17311- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTGATGCGGTGGTTCATCACCTGAGCTACGTTAGGGTGGAAGAAGACAT
ACGGCGAAAAATGGCAACATTTTCTCACGCCGGGGAGGAACAGGTACTGA
TGCGGTGGTTCATCACCTGAGCTACGTTAGGGTGGAAGAAGACATACGGC
GAAAAATGGCAACATTTTCTCACGCCGGGGAGGAACAGGTCGGATGGTAC
GAGAGAAGTTGGCTTGGCTGGGCGGCCAACAACTCACTGACGGATCTCCA
TCCTGTGATTCCTGTGGCTTATAAGCGGGTCGTGTCTCAGCCCCGGATGG
TACGAGAGAAGTTGGCTTGGCTGGGCGGCCAACAACTCACTGACGGATCT
CCATCCTGTGATTCCTGTGGCTTATAAGCGGGTCGTGTCTCAGCCC
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