mRNA_E-fasciculatus_F_contig15578.3878.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15578.3878.1
Unique NamemRNA_E-fasciculatus_F_contig15578.3878.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15578.3878.1 vs. uniprot
Match: A0A6H5L1B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.890e-17
Identity = 48/61 (78.69%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SNRQEGS----ADGRGGLVKTGRARCVVVRPWPVGAWAVGVAANAGSGRLVSACSDGRMRI 171
            S RQEGS    AD RGG V  GRAR V VRPWPVG WAVGVAANAGSGRLVSACSDGRMR+
Sbjct:  578 STRQEGSRADDADSRGGRVAAGRARYVGVRPWPVGIWAVGVAANAGSGRLVSACSDGRMRL 638
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BLAST of mRNA_E-fasciculatus_F_contig15578.3878.1 vs. uniprot
Match: D7FPS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS3_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.580e-9
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:  163 MRITQLRPNNEEQRLRAAVLAARQARQQAATRSGDAP 273
            MRITQLRPNNEEQRLR AVLAARQA+QQAA RSG AP
Sbjct:    1 MRITQLRPNNEEQRLRTAVLAARQAKQQAAARSGGAP 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15578.3878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1B7_9PHAE3.890e-1778.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS3_ECTSI3.580e-989.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15578contigE-fasciculatus_F_contig15578:49..1698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15578.3878.1prot_E-fasciculatus_F_contig15578.3878.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15578 49..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.2914004-CDS-E-fasciculatus_F_contig15578:48..2151622928031.2914004-CDS-E-fasciculatus_F_contig15578:48..215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15578 49..215 +
1695995795.7251222-CDS-E-fasciculatus_F_contig15578:48..2151695995795.7251222-CDS-E-fasciculatus_F_contig15578:48..215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15578 49..215 +
1622928031.3043542-CDS-E-fasciculatus_F_contig15578:1310..14191622928031.3043542-CDS-E-fasciculatus_F_contig15578:1310..1419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15578 1311..1419 +
1695995795.735835-CDS-E-fasciculatus_F_contig15578:1310..14191695995795.735835-CDS-E-fasciculatus_F_contig15578:1310..1419Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15578 1311..1419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928031.3176534-UTR-E-fasciculatus_F_contig15578:1419..16981622928031.3176534-UTR-E-fasciculatus_F_contig15578:1419..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15578 1420..1698 +
1695995795.749298-UTR-E-fasciculatus_F_contig15578:1419..16981695995795.749298-UTR-E-fasciculatus_F_contig15578:1419..1698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15578 1420..1698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15578.3878.1

>prot_E-fasciculatus_F_contig15578.3878.1 ID=prot_E-fasciculatus_F_contig15578.3878.1|Name=mRNA_E-fasciculatus_F_contig15578.3878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
SNRQEGSADGRGGLVKTGRARCVVVRPWPVGAWAVGVAANAGSGRLVSAC
SDGRMRITQLRPNNEEQRLRAAVLAARQARQQAATRSGDAP*
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mRNA from alignment at E-fasciculatus_F_contig15578:49..1698+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15578.3878.1 ID=mRNA_E-fasciculatus_F_contig15578.3878.1|Name=mRNA_E-fasciculatus_F_contig15578.3878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15578:49..1698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAATCGACAGGAGGGTAGCGCCGACGGTCGTGGTGGACTTGTGAAGAC
GGGGAGGGCGCGGTGCGTCGTTGTTCGGCCGTGGCCGGTGGGAGCCTGGG
CGGTGGGAGTCGCCGCGAACGCCGGGAGCGGGAGGCTGGTATCGGCGTGC
TCCGACGGGCGCATGAGGTAATTCGAAATTGTTTTTTGAGTACATCGGTG
TTGTTCATGCACAAGGCCAGACATGGCAAGAATAACTTTTTTTTTTTGTG
CTTGTACGAGTGATACGCGAGATTCGCCTGGTCTGTGTCGTTTAGTTGCG
GGGACCAATGAGGATTGGGAGTTCCGCTCAATTTTTCTTGGGCGTCCGTT
TCTTCGTCAGCAGCGATGCCGCTTCAGCGGCGTGTACGTCTTGGTGGGTA
TACCCCGCCGTTTTTGCCGTTCCCCGCCCCCCCCCCTCCCTGGAACGATT
GACCATCGGTGACCTGTCCTGTGGGACAATGCTCCGCCCCTCTCCAGGAC
ACGTGGTCAATGGTCTAACCGCTAGGCAGCTGAAACAACCCTGTTGGTAC
CTTTCCGAGATTACCATTCTGTATCTCGCCGCCGGAGGTCTGAAGCGCGT
GTTATTATTGTAGTGATCATACAACGCGGGATCCACCCGTACAAGGAAAG
CAGGTTGAATCGAGTCGACACGAGTTGGCTTGCCCCGTGTAGTGCAAACT
TGGGAACGGCAAAGAAGACTCGCACACCCCCGGTTTTCCTAGCGGAGGAA
GGGCGCCCATACCGAAAATTTGTTTCGTAACTGAAGGCTCCTTTGTTCAT
TGTTAACAAGTACTTCGTATACAATACCATGAATAGTCGAAGGGGATTTG
TTGAAAGTCTTTGCGGCGAGTGGGGGAGAAACCCTGCTGGACGCTGGGCT
TCCCGTAGGTGACACAAGATACCACACCCCCTGGACCGATTTTCACAGCT
ATCATCGACTACTCCACGACGAAGATGATTTCAAAATCAAGAGAAGATAT
GTTTTTCGGAAAGGTTTTGATATCCACGAGACGGTTCCAACTCCGCCATT
TTCGGCACCGCCATCCTTTCTTTCTACAGTGGAGTAATGGGACTTTGAAA
ATCAGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATTTTCTTGTT
TTGACTGCTGTGCATTATCTACCTTTGCTCTCGATGGTACAGGCACCGCT
CGTATTCCCGTGCGACCTATTTAATCCTTTTGTTTGTTTTAACCCGTCGT
GTGCAACCGCAGGATCACCCAGCTCCGGCCCAACAACGAGGAGCAGCGTT
TGCGCGCTGCCGTGCTTGCAGCGCGCCAAGCCAGGCAGCAAGCCGCCACG
CGAAGCGGAGACGCGCCGTGAAAGGCCACTCCCAAAGTTAGCGGTAGCAC
GGTCGGTCCCCATCCGTTGCTCCTGCCTTGTCTTGCTCGGGAACGGCACC
TTACCACCTGGTTCGCCTATGCATGCATACGTGGCACAGCTGATGGTAGC
TTGGTGGCGCCGCTATGTAGATGTCGACCATTGCGGGAAAGGTGCGGCAC
TTTGGTTGTCACTCAGCTGGATATATATTGGGGCTAAGCGTGTGGGCTAT
ATGTATGCCCCGTGGGTGTCTGTGTAGCATGTCAGAACGTCAGAACCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15578:49..1698+

>mRNA_E-fasciculatus_F_contig15578.3878.1 ID=mRNA_E-fasciculatus_F_contig15578.3878.1|Name=mRNA_E-fasciculatus_F_contig15578.3878.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15578:49..1698+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAATCGACAGGAGGGTAGCGCCGACGGTCGTGGTGGACTTGTGAAGAC
GGGGAGGGCGCGGTGCGTCGTTGTTCGGCCGTGGCCGGTGGGAGCCTGGG
CGGTGGGAGTCGCCGCGAACGCCGGGAGCGGGAGGCTGGTATCGGCGTGC
TCCGACGGGCGCATGAGAGCAATCGACAGGAGGGTAGCGCCGACGGTCGT
GGTGGACTTGTGAAGACGGGGAGGGCGCGGTGCGTCGTTGTTCGGCCGTG
GCCGGTGGGAGCCTGGGCGGTGGGAGTCGCCGCGAACGCCGGGAGCGGGA
GGCTGGTATCGGCGTGCTCCGACGGGCGCATGAGGATCACCCAGCTCCGG
CCCAACAACGAGGAGCAGCGTTTGCGCGCTGCCGTGCTTGCAGCGCGCCA
AGCCAGGCAGCAAGCCGCCACGCGAAGCGGAGACGCGCCGTGAGATCACC
CAGCTCCGGCCCAACAACGAGGAGCAGCGTTTGCGCGCTGCCGTGCTTGC
AGCGCGCCAAGCCAGGCAGCAAGCCGCCACGCGAAGCGGAGACGCGCCGT
GA
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