mRNA_E-fasciculatus_F_contig15567.3876.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15567.3876.1
Unique NamemRNA_E-fasciculatus_F_contig15567.3876.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15567.3876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15567contigE-fasciculatus_F_contig15567:1677..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size514
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928030.130345-UTR-E-fasciculatus_F_contig15567:1676..18721622928030.130345-UTR-E-fasciculatus_F_contig15567:1676..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15567 1677..1872 +
1695995795.6495924-UTR-E-fasciculatus_F_contig15567:1676..18721695995795.6495924-UTR-E-fasciculatus_F_contig15567:1676..1872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15567 1677..1872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928030.1423283-CDS-E-fasciculatus_F_contig15567:1872..21901622928030.1423283-CDS-E-fasciculatus_F_contig15567:1872..2190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15567 1873..2190 +
1695995795.6583328-CDS-E-fasciculatus_F_contig15567:1872..21901695995795.6583328-CDS-E-fasciculatus_F_contig15567:1872..2190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15567 1873..2190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15567.3876.1prot_E-fasciculatus_F_contig15567.3876.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15567 1873..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15567.3876.1

>prot_E-fasciculatus_F_contig15567.3876.1 ID=prot_E-fasciculatus_F_contig15567.3876.1|Name=mRNA_E-fasciculatus_F_contig15567.3876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
MLWFRVQAWLVGRRRRRRQRQQNGALGRSCKMVMLWQIDRRNATFPKQLT
SVDRLAPSCAGNVFFLLPHVSVRTAYGAVGAFIQKLRHYNPPLISPTFEN
TLAPL*
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mRNA from alignment at E-fasciculatus_F_contig15567:1677..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15567.3876.1 ID=mRNA_E-fasciculatus_F_contig15567.3876.1|Name=mRNA_E-fasciculatus_F_contig15567.3876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=514bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15567:1677..2190+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTACGCAGCATCATGGCTGACGCGCCTCAGGGGACACTCGGCGAAACAG
CGGCGAACAACAAACCCTCAGGTGAGTAGGGGTTTCCCCTGTACGTAGTC
CAGTGCTAGAGTTTTCCGCTCTGTGGGGATGTCGAGGGTGTGGGATTCAG
GGTAGGAGGTTGAGGTTGGCGATGTGGGTGATGTATAGGGTAAGGTATGT
TGTGGTTTCGTGTGCAGGCATGGCTTGTTGGGCGGCGGCGGCGTCGGAGG
CAACGGCAGCAGAACGGGGCATTGGGGAGAAGCTGCAAGATGGTAATGTT
GTGGCAGATTGATCGACGTAACGCGACGTTCCCAAAACAGCTGACGTCCG
TTGATCGATTGGCACCAAGCTGTGCAGGAAATGTATTTTTTCTGTTGCCG
CATGTGTCTGTTAGGACAGCCTACGGTGCGGTCGGTGCGTTCATCCAAAA
GCTGCGACACTACAACCCCCCTCTCATATCCCCCACATTTGAGAATACCC
TTGCTCCGTTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15567:1677..2190+

>mRNA_E-fasciculatus_F_contig15567.3876.1 ID=mRNA_E-fasciculatus_F_contig15567.3876.1|Name=mRNA_E-fasciculatus_F_contig15567.3876.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15567:1677..2190+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTGGTTTCGTGTGCAGGCATGGCTTGTTGGGCGGCGGCGGCGTCG
GAGGCAACGGCAGCAGAACGGGGCATTGGGGAGAAGCTGCAAGATGGTAA
TGTTGTGGCAGATTGATCGACGTAACGCGACGTTCCCAAAACAGCTGACG
TCCGTTGATCGATTGGCACCAAGCTGTGCAGGAAATGTATTTTTTCTGTT
GCCGCATGTGTCTGTTAGGACAGCCTACGGTGCGGTCGGTGCGTTCATCC
AAAAGCTGCGACACTACAACCCCCCTCTCATATCCCCCACATTTGAGAAT
ACCCTTGCTCCGTTATGAATGTTGTGGTTTCGTGTGCAGGCATGGCTTGT
TGGGCGGCGGCGGCGTCGGAGGCAACGGCAGCAGAACGGGGCATTGGGGA
GAAGCTGCAAGATGGTAATGTTGTGGCAGATTGATCGACGTAACGCGACG
TTCCCAAAACAGCTGACGTCCGTTGATCGATTGGCACCAAGCTGTGCAGG
AAATGTATTTTTTCTGTTGCCGCATGTGTCTGTTAGGACAGCCTACGGTG
CGGTCGGTGCGTTCATCCAAAAGCTGCGACACTACAACCCCCCTCTCATA
TCCCCCACATTTGAGAATACCCTTGCTCCGTTATGA
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