mRNA_E-fasciculatus_F_contig15566.3874.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15566.3874.1
Unique NamemRNA_E-fasciculatus_F_contig15566.3874.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: D7G427_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G427_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.540e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGS 123
            MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQG+
Sbjct:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGA 41          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: A0A4C1ZV73_EUMVA (Armadillo repeat-containing protein 6 homolog n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZV73_EUMVA)

HSP 1 Score: 58.5 bits (140), Expect = 2.490e-8
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTLRDLAHQRGAQLVL----ERANQVASD 216
            M + ITQET+DEVVKEN+E+F+MD E A +DAV QF AQ        H +R  A + GA  VL    E  N V S+
Sbjct:    1 MVRVITQETYDEVVKENIEEFEMDPEEAIKDAVAQFEAQQECEKDIAHRVR--AGKEGAYEVLLNILEHKNNVTSN 74          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: A0A2A4JXW5_HELVI (Uncharacterized protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JXW5_HELVI)

HSP 1 Score: 55.5 bits (132), Expect = 3.360e-8
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTLRDLAHQRGAQLVLERANQVASDLCIGNIY 237
            M + ITQET+DEVVKEN+++FDM  + A ++AV QF AQG   +   + ++DLA   G   ++        DLC    Y
Sbjct:    1 MVRVITQETYDEVVKENIDEFDMTPDEAIKEAVAQFEAQG---VDLSNIIKDLALGSGDNHLVSETISKLKDLCATKKY 76          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: UPI001601DB86 (armadillo repeat-containing protein 6-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601DB86)

HSP 1 Score: 58.5 bits (140), Expect = 4.300e-8
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTL 150
            MAK ITQETFD VVKENME+FDM+ E A +DAV QF +QG      V TL
Sbjct:    1 MAKQITQETFDAVVKENMEEFDMEGEEAVQDAVQQFESQGVNLSNIVKTL 50          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: C3Y251_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y251_BRAFL)

HSP 1 Score: 58.5 bits (140), Expect = 4.400e-8
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTL 150
            MAK ITQETFD VVKENME+FDM+ E A +DAV QF +QG      V TL
Sbjct:    1 MAKQITQETFDAVVKENMEEFDMEGEEAVQDAVQQFESQGVNLSNIVKTL 50          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: UPI001FA5738B (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA5738B)

HSP 1 Score: 56.2 bits (134), Expect = 7.840e-8
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTLRDLAHQRGAQLVLERANQVASDLCIG 228
            M + ITQET+DEVVKEN+++FDM  E A ++AV QF AQG   +   + ++DLA   G   V+        +LC G
Sbjct:    1 MVRVITQETYDEVVKENIDEFDMTPEEAIKEAVAQFEAQG---VDLSNIIKDLALGSGDNHVVTENVSKLKELCSG 73          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: A0A6P3D5Y6_BOMTE (armadillo repeat-containing protein 6 homolog n=5 Tax=Bombus TaxID=28641 RepID=A0A6P3D5Y6_BOMTE)

HSP 1 Score: 56.6 bits (135), Expect = 2.050e-7
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTLRDLAHQRGAQLVLERANQVAS---DLCIGNIYLTRDLL 255
            M + ITQET+DEVV ENME F M  + A  DAV QF AQG   +   + ++DL     ++L++   NQ+ +   D    N++LT D L
Sbjct:    1 MVRVITQETYDEVVNENMEQFSMTPKEAIEDAVKQFEAQG---VDLSNIIKDLILNDDSELIVSSLNQINNAIEDQNYDNVHLTLDKL 85          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: A0A3S2LST3_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2LST3_CHISP)

HSP 1 Score: 56.6 bits (135), Expect = 2.060e-7
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTLRDLAHQRGAQLVLERANQVASDLC 222
            M + ITQETFDEVVKEN+++FDM  E A ++A  QF AQG   +   + ++DLA   G   V+   N +  +LC
Sbjct:    1 MVRVITQETFDEVVKENIDEFDMSPEEAIKEATAQFQAQG---VDLSNIIKDLALDTGEHQVITIVNSL-KELC 70          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: UPI00201F87A1 (armadillo repeat-containing protein 6-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F87A1)

HSP 1 Score: 56.2 bits (134), Expect = 2.800e-7
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQG 120
            MAK ITQETFD+VVKENMEDFDM  E A  DAV QF  QG
Sbjct:    1 MAKQITQETFDDVVKENMEDFDMAVEDAIEDAVQQFQTQG 40          
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Match: A0A7R8VNC2_TIMDO (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R8VNC2_TIMDO)

HSP 1 Score: 55.8 bits (133), Expect = 3.620e-7
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQG 120
            M + ITQETFD+VVKEN+EDFDM  E A +DAV QF AQG
Sbjct:    1 MVRVITQETFDDVVKENIEDFDMSPEEALQDAVQQFEAQG 40          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15566.3874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G427_ECTSI1.540e-1597.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4C1ZV73_EUMVA2.490e-848.68Armadillo repeat-containing protein 6 homolog n=1 ... [more]
A0A2A4JXW5_HELVI3.360e-840.51Uncharacterized protein (Fragment) n=1 Tax=Helioth... [more]
UPI001601DB864.300e-864.00armadillo repeat-containing protein 6-like n=1 Tax... [more]
C3Y251_BRAFL4.400e-864.00Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
UPI001FA5738B7.840e-843.42Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A6P3D5Y6_BOMTE2.050e-740.91armadillo repeat-containing protein 6 homolog n=5 ... [more]
A0A3S2LST3_CHISP2.060e-744.59Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
UPI00201F87A12.800e-775.00armadillo repeat-containing protein 6-like n=1 Tax... [more]
A0A7R8VNC2_TIMDO3.620e-770.00Hypothetical protein n=2 Tax=Timema TaxID=61471 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15566contigE-fasciculatus_F_contig15566:326..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog2880.D7G427
EggNOG free text desc.hematopoietic progenitor cell differentiation
EggNOG OGsKOG4199@1,KOG4199@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928030.0911033-CDS-E-fasciculatus_F_contig15566:325..5801622928030.0911033-CDS-E-fasciculatus_F_contig15566:325..580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15566 326..580 -
1695995795.6364453-CDS-E-fasciculatus_F_contig15566:325..5801695995795.6364453-CDS-E-fasciculatus_F_contig15566:325..580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15566 326..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15566.3874.1prot_E-fasciculatus_F_contig15566.3874.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15566 326..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15566.3874.1

>prot_E-fasciculatus_F_contig15566.3874.1 ID=prot_E-fasciculatus_F_contig15566.3874.1|Name=mRNA_E-fasciculatus_F_contig15566.3874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=85bp
MAKFITQETFDEVVKENMEDFDMDRESAARDAVGQFNAQGSTTLTAVHTL
RDLAHQRGAQLVLERANQVASDLCIGNIYLTRDLL
back to top

mRNA from alignment at E-fasciculatus_F_contig15566:326..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15566.3874.1 ID=mRNA_E-fasciculatus_F_contig15566.3874.1|Name=mRNA_E-fasciculatus_F_contig15566.3874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=255bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15566:326..580- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCAAGTTCATCACGCAAGAGACGTTTGACGAAGTGGTCAAGGAGAA CATGGAGGATTTCGACATGGATAGAGAGAGCGCGGCGAGGGATGCTGTGG GCCAGTTCAACGCTCAAGGTTCGACCACTCTTACAGCAGTACACACTCTG CGGGATCTCGCCCACCAGCGAGGTGCACAGCTGGTTCTAGAGCGAGCGAA CCAAGTGGCCAGTGACCTTTGCATTGGGAACATATATTTGACTCGCGATT TGCTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15566:326..580-

>mRNA_E-fasciculatus_F_contig15566.3874.1 ID=mRNA_E-fasciculatus_F_contig15566.3874.1|Name=mRNA_E-fasciculatus_F_contig15566.3874.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15566:326..580- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCAAGTTCATCACGCAAGAGACGTTTGACGAAGTGGTCAAGGAGAA
CATGGAGGATTTCGACATGGATAGAGAGAGCGCGGCGAGGGATGCTGTGG
GCCAGTTCAACGCTCAAGGTTCGACCACTCTTACAGCAGTACACACTCTG
CGGGATCTCGCCCACCAGCGAGGTGCACAGCTGGTTCTAGAGCGAGCGAA
CCAAGTGGCCAGTGACCTTTGCATTGGGAACATATATTTGACTCGCGATT
TGCTGATGGCCAAGTTCATCACGCAAGAGACGTTTGACGAAGTGGTCAAG
GAGAACATGGAGGATTTCGACATGGATAGAGAGAGCGCGGCGAGGGATGC
TGTGGGCCAGTTCAACGCTCAAGGTTCGACCACTCTTACAGCAGTACACA
CTCTGCGGGATCTCGCCCACCAGCGAGGTGCACAGCTGGTTCTAGAGCGA
GCGAACCAAGTGGCCAGTGACCTTTGCATTGGGAACATATATTTGACTCG
CGATTTGCTG
back to top