mRNA_E-fasciculatus_F_contig1555.3862.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1555.3862.1
Unique NamemRNA_E-fasciculatus_F_contig1555.3862.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1555.3862.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.040e-48
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 QEMTDQLSKLEGLAAGGNDGHTLLQQHQKEMLAKLREVRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLTRALEAGSSSSADPRSA 279
            +EMT+QLSKLEGLA GGNDGHTLLQQHQKEMLAKLRE+RAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHL+RALEAG+SSSADP SA
Sbjct:    6 KEMTEQLSKLEGLA-GGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEAGASSSADPTSA 97
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1555.3862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY3_ECTSI2.040e-4892.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1555contigE-fasciculatus_F_contig1555:12624..13381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Exons2
Model size282
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1555.3862.1prot_E-fasciculatus_F_contig1555.3862.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1555 12624..13375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.0186338-CDS-E-fasciculatus_F_contig1555:12623..128621622928029.0186338-CDS-E-fasciculatus_F_contig1555:12623..12862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1555 12624..12862 -
1695995795.0738573-CDS-E-fasciculatus_F_contig1555:12623..128621695995795.0738573-CDS-E-fasciculatus_F_contig1555:12623..12862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1555 12624..12862 -
1622928029.031139-CDS-E-fasciculatus_F_contig1555:13338..133751622928029.031139-CDS-E-fasciculatus_F_contig1555:13338..13375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1555 13339..13375 -
1695995795.085006-CDS-E-fasciculatus_F_contig1555:13338..133751695995795.085006-CDS-E-fasciculatus_F_contig1555:13338..13375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1555 13339..13375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928029.0433836-UTR-E-fasciculatus_F_contig1555:13375..133811622928029.0433836-UTR-E-fasciculatus_F_contig1555:13375..13381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1555 13376..13381 -
1695995795.0968747-UTR-E-fasciculatus_F_contig1555:13375..133811695995795.0968747-UTR-E-fasciculatus_F_contig1555:13375..13381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1555 13376..13381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1555.3862.1

>prot_E-fasciculatus_F_contig1555.3862.1 ID=prot_E-fasciculatus_F_contig1555.3862.1|Name=mRNA_E-fasciculatus_F_contig1555.3862.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
MTDQLSKLEGLAAGGNDGHTLLQQHQKEMLAKLREVRAAMATETGELDSV
KEANAEVAKLREVIKRRDYRILHLTRALEAGSSSSADPRSA*
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mRNA from alignment at E-fasciculatus_F_contig1555:12624..13381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1555.3862.1 ID=mRNA_E-fasciculatus_F_contig1555.3862.1|Name=mRNA_E-fasciculatus_F_contig1555.3862.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1555:12624..13381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGATGACCGACCAGCTCTCCAAGCTCGAGGGCCTGGCAGGTGAGCC
TGCGCACCTCTGTTTTTTCTGTTGTCTGTTTCTTCTACGAGCGGTGCTTC
GTACAGCAGTACCAGTAACTCATTAACCCCGCTGGCGTGTACATACATAG
ACAGATGGAACAACTTCGCGTGCTGACGCTAGAGGGAATCTGCATCCGCC
CGAGCACCTCGACAGACGTACGTGTCAGGCTTTCCTGTTATTTACTGTCT
TGGTTTGCGAACACAGCAGTAACCGTACCGCCGTACACGACACACCGCGC
CGGCGTCTCGTGTGAATCGCCCCAAGGGCGGGCGTTGCACGCAGGTGTGG
AGACCACCTTCTTCATGAAGGCACTATCTCCCCAACGTCTGTCGAGGACG
GTCCCCTCTTTTCACACAGGCCTTCGTGATAAAAAAAAAGGGCACCATTC
CTTGCGAACACCACACACAACCACCACCCCTAACAACCCTCCTCCTCCTC
CTCCGCCGGATGGGGAGAGCAGGCGGGAACGACGGGCACACTCTGCTGCA
GCAGCACCAGAAGGAGATGCTCGCAAAGCTCCGCGAGGTTCGCGCGGCCA
TGGCGACGGAGACGGGAGAGCTGGACTCGGTAAAGGAGGCCAACGCCGAG
GTGGCCAAGCTGCGGGAAGTCATCAAGAGGAGAGACTACCGCATATTGCA
CCTCACGAGGGCCTTGGAGGCGGGGTCGTCTTCATCTGCTGACCCTAGGT
CGGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1555:12624..13381-

>mRNA_E-fasciculatus_F_contig1555.3862.1 ID=mRNA_E-fasciculatus_F_contig1555.3862.1|Name=mRNA_E-fasciculatus_F_contig1555.3862.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1555:12624..13381- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCGACCAGCTCTCCAAGCTCGAGGGCCTGGCAGATGACCGACCAGC
TCTCCAAGCTCGAGGGCCTGGCAGCAGGCGGGAACGACGGGCACACTCTG
CTGCAGCAGCACCAGAAGGAGATGCTCGCAAAGCTCCGCGAGGTTCGCGC
GGCCATGGCGACGGAGACGGGAGAGCTGGACTCGGTAAAGGAGGCCAACG
CCGAGGTGGCCAAGCTGCGGGAAGTCATCAAGAGGAGAGACTACCGCATA
TTGCACCTCACGAGGGCCTTGGAGGCGGGGTCGTCTTCATCTGCTGACCC
TAGGTCGGCATGACAGGCGGGAACGACGGGCACACTCTGCTGCAGCAGCA
CCAGAAGGAGATGCTCGCAAAGCTCCGCGAGGTTCGCGCGGCCATGGCGA
CGGAGACGGGAGAGCTGGACTCGGTAAAGGAGGCCAACGCCGAGGTGGCC
AAGCTGCGGGAAGTCATCAAGAGGAGAGACTACCGCATATTGCACCTCAC
GAGGGCCTTGGAGGCGGGGTCGTCTTCATCTGCTGACCCTAGGTCGGCAT
GA
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